Wall clock time and date at job start Tue Mar 31 2020 22:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37914 * 119.93422 * 2 1 4 4 C 1.39597 * 119.86680 * 179.97438 * 3 2 1 5 5 C 1.47777 * 120.13114 * 179.97438 * 4 3 2 6 6 O 1.21567 * 120.00006 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00278 * 180.02562 * 5 4 3 8 8 C 1.46501 * 120.00704 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47509 * 179.97438 * 8 7 5 10 10 N 1.46900 * 109.46797 * 180.02562 * 9 8 7 11 11 C 1.46908 * 110.99592 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46894 * 179.97438 * 11 10 9 13 13 O 1.21299 * 120.00138 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00282 * 179.97438 * 12 11 10 15 15 C 1.37091 * 120.00266 * 179.97438 * 14 12 11 16 16 H 1.07998 * 120.00487 * 359.97438 * 15 14 12 17 17 C 1.38959 * 119.99878 * 180.02562 * 15 14 12 18 18 N 1.31410 * 120.00003 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 119.99963 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47596 * 59.99122 * 19 17 15 21 21 H 1.48506 * 109.47228 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47038 * 299.99543 * 19 17 15 23 23 C 1.39636 * 119.73599 * 0.02562 * 4 3 2 24 24 C 1.37871 * 119.86973 * 359.97418 * 23 4 3 25 25 C 1.38495 * 119.93327 * 179.97438 * 2 1 3 26 26 Cl 1.73602 * 119.86887 * 359.72774 * 25 2 1 27 27 H 1.08998 * 109.47263 * 270.01639 * 1 2 3 28 28 H 1.08997 * 109.47147 * 30.02515 * 1 2 3 29 29 H 1.09006 * 109.47142 * 150.01669 * 1 2 3 30 30 H 1.08000 * 120.06568 * 359.97438 * 3 2 1 31 31 H 0.97004 * 119.99715 * 0.02562 * 7 5 4 32 32 H 1.09002 * 109.46863 * 300.00702 * 8 7 5 33 33 H 1.08999 * 109.46935 * 59.99720 * 8 7 5 34 34 H 1.08997 * 109.46954 * 300.00197 * 9 8 7 35 35 H 1.08993 * 109.46972 * 60.00286 * 9 8 7 36 36 H 1.00897 * 111.00519 * 56.05018 * 10 9 8 37 37 H 1.09002 * 109.46612 * 299.99715 * 11 10 9 38 38 H 1.08990 * 109.47355 * 59.99657 * 11 10 9 39 39 H 0.97007 * 119.99713 * 0.02562 * 14 12 11 40 40 H 0.96999 * 119.99840 * 180.02562 * 18 17 15 41 41 H 1.08003 * 120.06314 * 179.97438 * 23 4 3 42 42 H 1.08002 * 119.93595 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1952 0.0000 4 6 3.5912 1.1935 0.0005 5 6 4.3345 2.4707 0.0000 6 8 3.7303 3.5256 -0.0014 7 7 5.6822 2.4661 0.0000 8 6 6.4192 3.7323 -0.0012 9 6 7.9224 3.4475 -0.0003 10 7 8.6613 4.7172 -0.0008 11 6 10.1115 4.4823 -0.0005 12 6 10.8344 5.8045 -0.0017 13 8 10.2037 6.8406 -0.0031 14 7 12.1818 5.8359 -0.0012 15 6 12.8395 7.0388 -0.0028 16 1 12.2780 7.9613 -0.0049 17 6 14.2287 7.0710 -0.0028 18 7 14.9120 5.9485 -0.0008 19 14 15.1249 8.7099 -0.0043 20 1 14.7480 9.4813 1.2074 21 1 16.5908 8.4726 -0.0034 22 1 14.7482 9.4790 -1.2176 23 6 4.2824 -0.0198 0.0005 24 6 3.5834 -1.2082 0.0005 25 6 2.1981 -1.2002 0.0005 26 17 1.3249 -2.7006 0.0084 27 1 -0.3634 0.0003 1.0276 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3634 -0.8902 -0.5136 30 1 1.6552 2.1305 -0.0004 31 1 6.1643 1.6244 0.0000 32 1 6.1578 4.3040 -0.8916 33 1 6.1579 4.3056 0.8883 34 1 8.1834 2.8760 0.8904 35 1 8.1841 2.8741 -0.8895 36 1 8.3881 5.2949 0.7801 37 1 10.3878 3.9174 0.8898 38 1 10.3880 3.9166 -0.8901 39 1 12.6862 5.0073 -0.0005 40 1 15.8817 5.9711 -0.0004 41 1 5.3624 -0.0272 0.0005 42 1 4.1169 -2.1472 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133244978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:32 Heat of formation + Delta-G solvation = -58.148052 kcal Electronic energy + Delta-G solvation = -24664.947067 eV Core-core repulsion = 20670.391863 eV Total energy + Delta-G solvation = -3994.555204 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.70795 -39.10491 -38.33175 -36.97181 -36.35790 -34.57539 -33.84931 -33.36360 -31.59896 -31.24714 -29.43355 -27.50518 -26.18381 -24.49947 -23.52473 -22.61768 -22.15636 -20.55190 -19.31671 -18.22350 -17.89470 -17.09688 -16.70355 -16.27531 -15.93054 -15.61923 -15.33452 -15.15226 -14.68886 -14.53621 -14.38441 -14.04545 -13.91723 -13.75967 -13.45420 -13.18199 -12.98833 -12.95380 -12.54638 -12.48027 -12.03080 -11.96299 -11.90202 -11.55002 -11.49938 -11.46096 -11.28414 -11.02516 -10.45224 -10.32796 -10.22770 -9.52000 -9.51426 -9.41913 -9.17410 -8.53246 -8.16340 -7.98552 -6.43631 -3.84506 0.14779 0.67361 1.53368 2.34618 2.71046 3.19413 3.25227 3.26297 3.29873 3.87743 4.06415 4.07411 4.16474 4.21677 4.38205 4.57188 4.65750 4.76595 4.88955 4.94707 5.03980 5.11582 5.14550 5.23791 5.29560 5.33028 5.50287 5.54819 5.64737 5.68769 5.72714 5.79179 5.85944 5.91070 6.04718 6.13895 6.22567 7.04073 7.14784 7.52969 7.53583 7.85406 8.03830 8.58845 9.15809 9.51576 10.02972 10.73956 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.037568 B = 0.001380 C = 0.001333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.127285 B =20286.165267 C =20998.203712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.083 4.083 3 C -0.049 4.049 4 C -0.123 4.123 5 C 0.557 3.443 6 O -0.530 6.530 7 N -0.722 5.722 8 C 0.119 3.881 9 C 0.049 3.951 10 N -0.665 5.665 11 C 0.053 3.947 12 C 0.439 3.561 13 O -0.582 6.582 14 N -0.562 5.562 15 C -0.301 4.301 16 H 0.103 0.897 17 C 0.023 3.977 18 N -0.902 5.902 19 Si 0.931 3.069 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.081 4.081 24 C -0.113 4.113 25 C -0.017 4.017 26 Cl -0.061 7.061 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.147 0.853 31 H 0.399 0.601 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.033 0.967 35 H 0.078 0.922 36 H 0.353 0.647 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.137 0.863 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.467 -21.042 0.937 32.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.083 4.083 3 C -0.068 4.068 4 C -0.126 4.126 5 C 0.344 3.656 6 O -0.407 6.407 7 N -0.374 5.374 8 C -0.004 4.004 9 C -0.081 4.081 10 N -0.298 5.298 11 C -0.080 4.080 12 C 0.224 3.776 13 O -0.466 6.466 14 N -0.199 5.199 15 C -0.431 4.431 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.543 5.543 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.100 4.100 24 C -0.131 4.131 25 C -0.044 4.044 26 Cl -0.032 7.032 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.165 0.835 31 H 0.234 0.766 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.173 0.827 37 H 0.063 0.937 38 H 0.106 0.894 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.155 0.845 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -25.193 -19.631 0.257 31.940 hybrid contribution 1.364 -0.729 0.897 1.788 sum -23.830 -20.360 1.154 31.364 Atomic orbital electron populations 1.20910 0.89609 1.03898 1.03330 1.19777 0.97259 0.90960 1.00352 1.21157 0.92605 0.98043 0.95023 1.20063 0.94417 0.93159 1.04979 1.18126 0.82065 0.88670 0.76762 1.90820 1.68352 1.32354 1.49142 1.45817 1.06086 1.10224 1.75299 1.21343 0.90388 0.84913 1.03763 1.22079 0.92217 0.92762 1.01067 1.59923 1.04147 1.14074 1.51705 1.21669 0.87747 0.97252 1.01337 1.19769 0.83078 0.90009 0.84701 1.90537 1.66398 1.34330 1.55363 1.41844 1.04330 1.09434 1.64290 1.19671 0.89178 0.86443 1.47770 0.87921 1.25263 0.96557 0.98819 0.97221 1.69601 1.07923 1.26322 1.50463 0.85907 0.77763 0.81375 0.79113 1.19903 1.20971 1.19850 1.21264 1.00165 0.90972 0.97609 1.20993 0.91845 0.99305 1.00972 1.21088 0.92528 0.87089 1.03684 1.98381 1.76482 1.31769 1.96585 0.90291 0.90584 0.90590 0.83546 0.76553 0.89847 0.91032 0.94865 0.90396 0.82743 0.93692 0.89449 0.77454 0.91806 0.84548 0.84112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 9.60 36.01 0.35 -0.28 16 2 C -0.08 -0.58 5.88 -104.65 -0.62 -1.20 16 3 C -0.05 -0.41 9.24 -39.19 -0.36 -0.77 16 4 C -0.12 -1.04 5.87 -104.97 -0.62 -1.66 16 5 C 0.56 6.04 7.77 -12.36 -0.10 5.94 16 6 O -0.53 -7.81 16.35 5.31 0.09 -7.72 16 7 N -0.72 -6.36 5.51 -61.27 -0.34 -6.70 16 8 C 0.12 1.29 5.93 -4.04 -0.02 1.27 16 9 C 0.05 0.52 5.80 -3.83 -0.02 0.50 16 10 N -0.67 -10.19 6.12 -115.06 -0.70 -10.90 16 11 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 12 C 0.44 10.22 7.82 -10.99 -0.09 10.13 16 13 O -0.58 -15.74 15.78 5.54 0.09 -15.66 16 14 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 15 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 16 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 17 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 18 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 19 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 C -0.08 -0.49 9.54 -39.19 -0.37 -0.87 16 24 C -0.11 -0.67 9.81 -39.61 -0.39 -1.06 16 25 C -0.02 -0.12 6.32 -39.38 -0.25 -0.37 16 26 Cl -0.06 -0.39 27.27 -51.86 -1.41 -1.80 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.34 8.08 -51.93 -0.42 -0.08 16 29 H 0.08 0.37 6.90 -51.93 -0.36 0.01 16 30 H 0.15 1.21 7.65 -52.49 -0.40 0.81 16 31 H 0.40 2.28 6.50 -40.82 -0.27 2.01 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.35 5.62 8.43 -39.29 -0.33 5.29 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 40 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.14 0.47 6.40 -52.48 -0.34 0.13 16 42 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 LS Contribution 377.56 15.07 5.69 5.69 Total: -1.00 -33.67 377.56 -9.04 -42.70 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -5.33 Total: 11.64 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -2.76 Total: 4.51 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.38 Total: -55.28 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: 0.17 Total: -23.38 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.41 Total: -1.80 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.67 -9.04 -42.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133244978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.445 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds