Wall clock time and date at job start Tue Mar 31 2020 22:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37913 * 120.06441 * 2 1 4 4 C 1.38492 * 120.13164 * 179.97438 * 3 2 1 5 5 Cl 1.73601 * 119.87036 * 179.97438 * 4 3 2 6 6 C 1.38541 * 120.26084 * 359.97438 * 4 3 2 7 7 C 1.37870 * 120.13395 * 0.02562 * 6 4 3 8 8 C 1.39597 * 120.06754 * 179.97438 * 2 1 3 9 9 C 1.47783 * 120.13048 * 359.74406 * 8 2 1 10 10 O 1.21564 * 120.00072 * 354.00218 * 9 8 2 11 11 N 1.34772 * 120.00192 * 174.00077 * 9 8 2 12 12 C 1.46497 * 120.00330 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47500 * 179.97438 * 12 11 9 14 14 N 1.46901 * 109.47223 * 179.97438 * 13 12 11 15 15 C 1.46901 * 110.99507 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.46857 * 180.02562 * 15 14 13 17 17 O 1.21294 * 120.00121 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00350 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00220 * 179.97438 * 18 16 15 20 20 H 1.07996 * 120.00051 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99901 * 180.02562 * 19 18 16 22 22 N 1.31415 * 120.00011 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99846 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47042 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46818 * 120.00044 * 23 21 19 26 26 H 1.48498 * 109.46802 * 239.99977 * 23 21 19 27 27 H 1.09002 * 109.47245 * 263.48401 * 1 2 3 28 28 H 1.08999 * 109.47582 * 23.48592 * 1 2 3 29 29 H 1.09001 * 109.47202 * 143.48405 * 1 2 3 30 30 H 1.08000 * 119.93949 * 359.97438 * 3 2 1 31 31 H 1.08007 * 119.92991 * 179.97438 * 6 4 3 32 32 H 1.08002 * 120.06274 * 180.02562 * 7 6 4 33 33 H 0.97000 * 119.99957 * 359.97438 * 11 9 8 34 34 H 1.09002 * 109.47269 * 300.00329 * 12 11 9 35 35 H 1.09008 * 109.47127 * 59.99796 * 12 11 9 36 36 H 1.08994 * 109.47027 * 300.00218 * 13 12 11 37 37 H 1.09008 * 109.46714 * 60.00012 * 13 12 11 38 38 H 1.00896 * 110.99631 * 56.05244 * 14 13 12 39 39 H 1.08998 * 109.47891 * 300.00393 * 15 14 13 40 40 H 1.08997 * 109.47334 * 60.00602 * 15 14 13 41 41 H 0.97004 * 119.99715 * 0.02562 * 18 16 15 42 42 H 0.97000 * 119.99570 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1936 0.0000 4 6 3.5828 1.1952 0.0005 5 17 4.4456 2.7016 -0.0001 6 6 4.2824 -0.0006 0.0016 7 6 3.6027 -1.2001 0.0016 8 6 2.2064 -1.2081 0.0005 9 6 1.4719 -2.4905 0.0068 10 8 0.2617 -2.4973 0.1215 11 7 2.1438 -3.6525 -0.1146 12 6 1.4156 -4.9237 -0.1090 13 6 2.4064 -6.0797 -0.2610 14 7 1.6762 -7.3544 -0.2547 15 6 2.5977 -8.4894 -0.3984 16 6 1.8142 -9.7767 -0.3883 17 8 0.6070 -9.7512 -0.2732 18 7 2.4549 -10.9565 -0.5072 19 6 1.7422 -12.1276 -0.4974 20 1 0.6674 -12.1048 -0.3950 21 6 2.4029 -13.3440 -0.6195 22 7 3.7108 -13.3717 -0.7437 23 14 1.4317 -14.9397 -0.6069 24 1 -0.0145 -14.6377 -0.4569 25 1 1.6556 -15.6653 -1.8831 26 1 1.8821 -15.7842 0.5284 27 1 -0.3634 -0.1166 1.0210 28 1 -0.3634 0.9425 -0.4095 29 1 -0.3634 -0.8259 -0.6115 30 1 1.6580 2.1289 -0.0004 31 1 5.3624 0.0069 0.0016 32 1 4.1492 -2.1317 0.0029 33 1 3.1094 -3.6471 -0.2066 34 1 0.8756 -5.0289 0.8320 35 1 0.7080 -4.9408 -0.9379 36 1 2.9460 -5.9743 -1.2021 37 1 3.1143 -6.0627 0.5677 38 1 0.9687 -7.3693 -0.9738 39 1 3.1388 -8.4012 -1.3405 40 1 3.3068 -8.4888 0.4293 41 1 3.4204 -10.9770 -0.5988 42 1 4.1719 -14.2209 -0.8292 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133248858.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:12 Heat of formation + Delta-G solvation = -53.990129 kcal Electronic energy + Delta-G solvation = -24884.116934 eV Core-core repulsion = 20889.742031 eV Total energy + Delta-G solvation = -3994.374903 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.83746 -38.95371 -38.33419 -37.01241 -36.39184 -34.64707 -33.83252 -33.01278 -31.76549 -31.24476 -29.35011 -27.55703 -26.06568 -24.38900 -23.71978 -22.52736 -21.83199 -20.87959 -19.31752 -18.28825 -17.90805 -16.87265 -16.59889 -16.28191 -15.99950 -15.58636 -15.49001 -15.29098 -14.62653 -14.37141 -14.33020 -13.90946 -13.77151 -13.72570 -13.45247 -13.22791 -13.10932 -12.77983 -12.61381 -12.41183 -11.98086 -11.93848 -11.78425 -11.55217 -11.50771 -11.46640 -11.37203 -11.06888 -10.35604 -10.24727 -9.99866 -9.54500 -9.48390 -9.44932 -9.12406 -8.53816 -8.16883 -7.99021 -6.44321 -3.85105 0.16435 0.68926 1.52578 2.37245 2.72751 3.15087 3.24009 3.26018 3.33500 3.87147 4.06784 4.11184 4.21093 4.23616 4.38810 4.56754 4.70834 4.81963 4.89102 4.93592 5.14071 5.22350 5.23426 5.27880 5.32913 5.46979 5.51343 5.58747 5.68320 5.73560 5.75530 5.84499 5.90562 6.00747 6.11374 6.20991 6.23283 7.03949 7.15508 7.52540 7.53464 7.87218 8.03796 8.58213 9.15496 9.51157 10.02353 10.73424 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.032067 B = 0.001438 C = 0.001379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.949167 B =19471.026690 C =20307.056723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.008 4.008 3 C -0.123 4.123 4 C -0.007 4.007 5 Cl -0.064 7.064 6 C -0.126 4.126 7 C -0.069 4.069 8 C -0.135 4.135 9 C 0.557 3.443 10 O -0.524 6.524 11 N -0.723 5.723 12 C 0.120 3.880 13 C 0.049 3.951 14 N -0.665 5.665 15 C 0.052 3.948 16 C 0.439 3.561 17 O -0.582 6.582 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.399 0.601 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.033 0.967 37 H 0.077 0.923 38 H 0.353 0.647 39 H 0.045 0.955 40 H 0.087 0.913 41 H 0.392 0.608 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.202 30.656 -0.023 31.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.009 4.009 3 C -0.142 4.142 4 C -0.034 4.034 5 Cl -0.035 7.035 6 C -0.145 4.145 7 C -0.088 4.088 8 C -0.138 4.138 9 C 0.344 3.656 10 O -0.402 6.402 11 N -0.375 5.375 12 C -0.003 4.003 13 C -0.082 4.082 14 N -0.298 5.298 15 C -0.080 4.080 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.122 0.878 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.118 0.882 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.234 0.766 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.172 0.828 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.225 0.775 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.678 30.546 0.799 30.777 hybrid contribution 1.323 -0.661 -1.009 1.791 sum 5.001 29.885 -0.210 30.301 Atomic orbital electron populations 1.21139 0.89058 1.03514 1.04216 1.20025 0.97341 0.90621 0.92960 1.20982 0.91856 0.98814 1.02519 1.21186 0.92598 0.87520 1.02110 1.98396 1.76817 1.31665 1.96622 1.20983 1.00854 0.90366 1.02295 1.21267 0.92855 0.98215 0.96429 1.19922 0.93578 0.93570 1.06778 1.18102 0.87140 0.83430 0.76899 1.90771 1.13504 1.86992 1.48891 1.45837 1.10996 1.06033 1.74655 1.21329 0.94588 0.80628 1.03784 1.22084 0.95901 0.89467 1.00702 1.59928 1.14600 0.99625 1.55675 1.21670 0.94857 0.90674 1.00818 1.19770 0.88522 0.84598 0.84630 1.90537 1.14205 1.86882 1.54974 1.41860 1.09771 1.04678 1.63658 1.19771 0.93689 0.82549 1.46905 0.87807 1.25270 0.95775 0.99646 0.97239 1.69621 1.07180 1.27451 1.50051 0.85792 0.79818 0.80985 0.77709 1.19176 1.20770 1.20723 0.90083 0.92050 0.88167 0.84181 0.84193 0.84516 0.76633 0.89869 0.91071 0.94879 0.90426 0.82756 0.93697 0.89446 0.77461 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 8.72 36.01 0.31 -0.71 16 2 C -0.01 -0.07 5.91 -104.23 -0.62 -0.68 16 3 C -0.12 -0.87 9.44 -39.61 -0.37 -1.24 16 4 C -0.01 -0.05 6.33 -39.38 -0.25 -0.30 16 5 Cl -0.06 -0.42 28.95 -51.86 -1.50 -1.92 16 6 C -0.13 -0.76 9.81 -39.60 -0.39 -1.15 16 7 C -0.07 -0.42 9.52 -39.20 -0.37 -0.80 16 8 C -0.14 -1.15 5.87 -104.97 -0.62 -1.76 16 9 C 0.56 5.79 7.70 -12.36 -0.10 5.70 16 10 O -0.52 -7.09 13.34 5.31 0.07 -7.02 16 11 N -0.72 -6.18 5.50 -61.27 -0.34 -6.52 16 12 C 0.12 1.27 5.93 -4.04 -0.02 1.24 16 13 C 0.05 0.51 5.80 -3.82 -0.02 0.49 16 14 N -0.67 -10.10 6.13 -115.06 -0.70 -10.81 16 15 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 16 C 0.44 10.19 7.82 -10.99 -0.09 10.10 16 17 O -0.58 -15.68 15.78 5.55 0.09 -15.60 16 18 N -0.56 -14.06 5.29 -10.96 -0.06 -14.11 16 19 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 22 N -0.90 -24.26 13.05 55.50 0.72 -23.53 16 23 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.38 8.04 -51.93 -0.42 -0.04 16 29 H 0.10 1.03 5.86 -51.93 -0.30 0.72 16 30 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 32 H 0.14 0.48 6.45 -52.49 -0.34 0.14 16 33 H 0.40 2.24 6.54 -40.82 -0.27 1.98 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 38 H 0.35 5.57 8.43 -39.29 -0.33 5.24 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.39 9.30 7.90 -40.82 -0.32 8.97 16 42 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 374.93 15.07 5.65 5.65 Total: -1.00 -32.95 374.93 -9.19 -42.14 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -5.30 Total: 12.06 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -2.80 Total: 3.79 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.38 Total: -54.98 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: 0.16 Total: -22.62 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.50 Total: -1.92 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.95 -9.19 -42.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133248858.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.848 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds