Wall clock time and date at job start Tue Mar 31 2020 22:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37913 * 120.06441 * 2 1 4 4 C 1.38492 * 120.13164 * 179.97438 * 3 2 1 5 5 Cl 1.73601 * 119.87036 * 179.97438 * 4 3 2 6 6 C 1.38541 * 120.26084 * 359.97438 * 4 3 2 7 7 C 1.37870 * 120.13395 * 0.02562 * 6 4 3 8 8 C 1.39597 * 120.06754 * 179.97438 * 2 1 3 9 9 C 1.47783 * 120.13048 * 359.74406 * 8 2 1 10 10 O 1.21564 * 120.00072 * 354.00218 * 9 8 2 11 11 N 1.34772 * 120.00192 * 174.00077 * 9 8 2 12 12 C 1.46497 * 120.00330 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47500 * 179.97438 * 12 11 9 14 14 N 1.46901 * 109.47223 * 179.97438 * 13 12 11 15 15 C 1.46901 * 110.99507 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.46857 * 180.02562 * 15 14 13 17 17 O 1.21294 * 120.00121 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00350 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00220 * 179.97438 * 18 16 15 20 20 H 1.07996 * 120.00051 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99901 * 180.02562 * 19 18 16 22 22 N 1.31415 * 120.00011 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99846 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47042 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46818 * 120.00044 * 23 21 19 26 26 H 1.48498 * 109.46802 * 239.99977 * 23 21 19 27 27 H 1.09002 * 109.47245 * 263.48401 * 1 2 3 28 28 H 1.08999 * 109.47582 * 23.48592 * 1 2 3 29 29 H 1.09001 * 109.47202 * 143.48405 * 1 2 3 30 30 H 1.08000 * 119.93949 * 359.97438 * 3 2 1 31 31 H 1.08007 * 119.92991 * 179.97438 * 6 4 3 32 32 H 1.08002 * 120.06274 * 180.02562 * 7 6 4 33 33 H 0.97000 * 119.99957 * 359.97438 * 11 9 8 34 34 H 1.09002 * 109.47269 * 300.00329 * 12 11 9 35 35 H 1.09008 * 109.47127 * 59.99796 * 12 11 9 36 36 H 1.08994 * 109.47027 * 300.00218 * 13 12 11 37 37 H 1.09008 * 109.46714 * 60.00012 * 13 12 11 38 38 H 1.00896 * 110.99631 * 56.05244 * 14 13 12 39 39 H 1.08998 * 109.47891 * 300.00393 * 15 14 13 40 40 H 1.08997 * 109.47334 * 60.00602 * 15 14 13 41 41 H 0.97004 * 119.99715 * 0.02562 * 18 16 15 42 42 H 0.97000 * 119.99570 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1936 0.0000 4 6 3.5828 1.1952 0.0005 5 17 4.4456 2.7016 -0.0001 6 6 4.2824 -0.0006 0.0016 7 6 3.6027 -1.2001 0.0016 8 6 2.2064 -1.2081 0.0005 9 6 1.4719 -2.4905 0.0068 10 8 0.2617 -2.4973 0.1215 11 7 2.1438 -3.6525 -0.1146 12 6 1.4156 -4.9237 -0.1090 13 6 2.4064 -6.0797 -0.2610 14 7 1.6762 -7.3544 -0.2547 15 6 2.5977 -8.4894 -0.3984 16 6 1.8142 -9.7767 -0.3883 17 8 0.6070 -9.7512 -0.2732 18 7 2.4549 -10.9565 -0.5072 19 6 1.7422 -12.1276 -0.4974 20 1 0.6674 -12.1048 -0.3950 21 6 2.4029 -13.3440 -0.6195 22 7 3.7108 -13.3717 -0.7437 23 14 1.4317 -14.9397 -0.6069 24 1 -0.0145 -14.6377 -0.4569 25 1 1.6556 -15.6653 -1.8831 26 1 1.8821 -15.7842 0.5284 27 1 -0.3634 -0.1166 1.0210 28 1 -0.3634 0.9425 -0.4095 29 1 -0.3634 -0.8259 -0.6115 30 1 1.6580 2.1289 -0.0004 31 1 5.3624 0.0069 0.0016 32 1 4.1492 -2.1317 0.0029 33 1 3.1094 -3.6471 -0.2066 34 1 0.8756 -5.0289 0.8320 35 1 0.7080 -4.9408 -0.9379 36 1 2.9460 -5.9743 -1.2021 37 1 3.1143 -6.0627 0.5677 38 1 0.9687 -7.3693 -0.9738 39 1 3.1388 -8.4012 -1.3405 40 1 3.3068 -8.4888 0.4293 41 1 3.4204 -10.9770 -0.5988 42 1 4.1719 -14.2209 -0.8292 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133248858.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:12 Heat of formation + Delta-G solvation = -78.114133 kcal Electronic energy + Delta-G solvation = -24885.163029 eV Core-core repulsion = 20889.742031 eV Total energy + Delta-G solvation = -3995.420998 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.51839 -40.16569 -39.57767 -37.62246 -37.38590 -36.03325 -35.40802 -33.61659 -33.26513 -32.40033 -30.36930 -28.29275 -27.50669 -25.72685 -24.62390 -23.34049 -22.52150 -21.61928 -21.08915 -19.91733 -18.95725 -17.77118 -17.50488 -17.28962 -17.14334 -16.62206 -16.41379 -16.25552 -16.03616 -15.76528 -15.43710 -15.03245 -14.89747 -14.57579 -14.31023 -14.24301 -13.98314 -13.70311 -13.52100 -13.37668 -13.34557 -13.17066 -12.92231 -12.58419 -12.49532 -12.41494 -12.38859 -12.30278 -12.11264 -11.87476 -11.51136 -10.81225 -10.35895 -10.24182 -10.00915 -9.99343 -9.72319 -9.37162 -8.46771 -5.95172 -0.41776 0.18519 1.01561 1.37064 1.42797 1.56668 1.68729 1.93979 2.05951 2.30757 2.63082 3.01832 3.20911 3.52497 3.62811 3.68024 3.71742 3.91345 4.07618 4.12942 4.21650 4.32769 4.40201 4.47547 4.51831 4.62142 4.67032 4.77457 4.79310 4.90486 4.95184 5.00513 5.09786 5.13040 5.31838 5.41860 5.48264 5.62251 5.85382 6.07862 6.33522 6.46127 6.60678 7.13384 7.14210 7.56895 8.12614 8.70701 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.032067 B = 0.001438 C = 0.001379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.949167 B =19471.026690 C =20307.056723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.023 4.023 3 C -0.126 4.126 4 C -0.012 4.012 5 Cl -0.061 7.061 6 C -0.125 4.125 7 C -0.060 4.060 8 C -0.151 4.151 9 C 0.553 3.447 10 O -0.564 6.564 11 N -0.708 5.708 12 C 0.129 3.871 13 C 0.057 3.943 14 N -0.686 5.686 15 C 0.068 3.932 16 C 0.435 3.565 17 O -0.626 6.626 18 N -0.572 5.572 19 C -0.335 4.335 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.992 3.008 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.271 1.271 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.153 0.847 31 H 0.163 0.837 32 H 0.166 0.834 33 H 0.416 0.584 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.346 0.654 39 H 0.073 0.927 40 H 0.110 0.890 41 H 0.398 0.602 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.591 31.409 -0.238 32.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.025 4.025 3 C -0.144 4.144 4 C -0.039 4.039 5 Cl -0.032 7.032 6 C -0.143 4.143 7 C -0.079 4.079 8 C -0.154 4.154 9 C 0.342 3.658 10 O -0.445 6.445 11 N -0.361 5.361 12 C 0.004 3.996 13 C -0.072 4.072 14 N -0.319 5.319 15 C -0.064 4.064 16 C 0.222 3.778 17 O -0.512 6.512 18 N -0.210 5.210 19 C -0.465 4.465 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.196 1.196 26 H -0.196 1.196 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.170 0.830 31 H 0.181 0.819 32 H 0.184 0.816 33 H 0.254 0.746 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.165 0.835 39 H 0.091 0.909 40 H 0.128 0.872 41 H 0.232 0.768 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.140 31.318 0.581 31.919 hybrid contribution 0.601 -0.794 -0.936 1.367 sum 6.741 30.524 -0.355 31.261 Atomic orbital electron populations 1.21033 0.89651 1.03499 1.03313 1.20097 0.97218 0.91276 0.93862 1.21084 0.92222 0.98817 1.02297 1.21355 0.92646 0.88081 1.01835 1.98400 1.76630 1.31575 1.96573 1.21286 1.02026 0.89805 1.01171 1.21543 0.91769 0.99627 0.94947 1.19885 0.94633 0.92449 1.08445 1.18483 0.86830 0.84392 0.76132 1.90760 1.15330 1.87594 1.50785 1.45633 1.11752 1.04856 1.73886 1.21080 0.94652 0.81660 1.02175 1.22084 0.95536 0.86896 1.02652 1.59893 1.15081 1.01049 1.55883 1.21524 0.94207 0.87497 1.03148 1.20961 0.88477 0.86143 0.82184 1.90507 1.16557 1.87841 1.56312 1.41919 1.09902 1.04772 1.64366 1.19702 0.92996 0.84469 1.49293 0.90454 1.26007 0.96774 1.02092 0.96232 1.69669 1.07988 1.28566 1.49755 0.84888 0.77990 0.77229 0.78332 1.19946 1.19562 1.19616 0.90991 0.90237 0.90449 0.82978 0.81910 0.81629 0.74601 0.92069 0.92274 0.92373 0.88706 0.83538 0.90882 0.87238 0.76838 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.05 8.72 71.24 0.62 -1.43 16 2 C -0.02 -0.38 5.91 -19.61 -0.12 -0.49 16 3 C -0.13 -1.63 9.44 22.25 0.21 -1.42 16 4 C -0.01 -0.14 6.33 22.40 0.14 0.00 16 5 Cl -0.06 -0.68 28.95 -2.72 -0.08 -0.76 16 6 C -0.12 -1.15 9.81 22.25 0.22 -0.93 16 7 C -0.06 -0.58 9.52 22.52 0.21 -0.37 16 8 C -0.15 -2.40 5.87 -20.09 -0.12 -2.52 16 9 C 0.55 11.35 7.70 86.77 0.67 12.02 16 10 O -0.56 -15.96 13.34 -3.92 -0.05 -16.01 16 11 N -0.71 -11.04 5.50 -466.03 -2.57 -13.60 16 12 C 0.13 2.61 5.93 86.38 0.51 3.12 16 13 C 0.06 1.07 5.80 86.30 0.50 1.57 16 14 N -0.69 -19.92 6.13 -517.93 -3.17 -23.09 16 15 C 0.07 2.15 6.17 85.56 0.53 2.68 16 16 C 0.43 20.19 7.82 87.66 0.69 20.88 16 17 O -0.63 -34.55 15.78 -3.07 -0.05 -34.60 16 18 N -0.57 -28.77 5.29 -306.99 -1.62 -30.40 16 19 C -0.33 -18.92 9.68 84.04 0.81 -18.10 16 20 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 21 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 22 N -0.92 -48.79 13.05 21.67 0.28 -48.51 16 23 Si 0.99 42.65 29.55 68.60 2.03 44.68 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.08 0.99 8.04 -2.39 -0.02 0.98 16 29 H 0.08 1.71 5.86 -2.39 -0.01 1.70 16 30 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 31 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 32 H 0.17 0.51 6.45 -2.91 -0.02 0.49 16 33 H 0.42 3.41 6.54 -92.71 -0.61 2.80 16 34 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.35 10.82 8.43 -89.70 -0.76 10.06 16 39 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 41 H 0.40 18.74 7.90 -92.71 -0.73 18.01 16 42 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -73.50 374.93 -0.88 -74.38 By element: Atomic # 1 Polarization: 34.03 SS G_CDS: -1.00 Total: 33.03 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 5.35 Total: 14.88 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -7.08 Total: -115.60 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -0.10 Total: -50.61 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -73.50 -0.88 -74.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133248858.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.735 kcal (2) G-P(sol) polarization free energy of solvation -73.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds