Wall clock time and date at job start Tue Mar 31 2020 22:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38361 * 119.85527 * 2 1 4 4 C 1.37940 * 120.15945 * 180.23622 * 3 2 1 5 5 C 1.39599 * 119.87896 * 359.51192 * 4 3 2 6 6 C 1.47849 * 120.14302 * 180.23374 * 5 4 3 7 7 O 1.21559 * 119.99216 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00678 * 180.02562 * 6 5 4 9 9 C 1.46493 * 120.00331 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47257 * 179.97438 * 9 8 6 11 11 N 1.46900 * 109.47589 * 179.97438 * 10 9 8 12 12 C 1.46894 * 111.00170 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46961 * 179.97438 * 12 11 10 14 14 O 1.21297 * 120.00066 * 0.02562 * 13 12 11 15 15 N 1.34784 * 120.00286 * 179.97438 * 13 12 11 16 16 C 1.37093 * 119.99997 * 179.97438 * 15 13 12 17 17 H 1.07996 * 120.00446 * 0.02562 * 16 15 13 18 18 C 1.38953 * 119.99969 * 180.02562 * 16 15 13 19 19 N 1.31418 * 119.99778 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00146 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47338 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47008 * 120.00454 * 20 18 16 23 23 H 1.48508 * 109.46823 * 240.00082 * 20 18 16 24 24 C 1.39538 * 119.72285 * 0.25223 * 5 4 3 25 25 C 1.38103 * 119.83953 * 0.02562 * 24 5 4 26 26 Cl 1.73601 * 119.94136 * 179.97438 * 25 24 5 27 27 H 1.09001 * 109.46894 * 270.22980 * 1 2 3 28 28 H 1.08994 * 109.47287 * 30.22768 * 1 2 3 29 29 H 1.09003 * 109.46423 * 150.23312 * 1 2 3 30 30 H 1.08002 * 119.92307 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.06486 * 179.79391 * 4 3 2 32 32 H 0.97005 * 119.99746 * 359.97438 * 8 6 5 33 33 H 1.09000 * 109.47131 * 299.99352 * 9 8 6 34 34 H 1.09001 * 109.47490 * 59.99888 * 9 8 6 35 35 H 1.09005 * 109.47233 * 299.99780 * 10 9 8 36 36 H 1.09000 * 109.47371 * 59.99899 * 10 9 8 37 37 H 1.00908 * 110.99571 * 56.03977 * 11 10 9 38 38 H 1.08995 * 109.47314 * 299.99779 * 12 11 10 39 39 H 1.09004 * 109.47201 * 60.00368 * 12 11 10 40 40 H 0.96996 * 119.99316 * 0.02562 * 15 13 12 41 41 H 0.96996 * 120.00215 * 179.97438 * 19 18 16 42 42 H 1.07998 * 120.08128 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5752 1.2073 -0.0049 5 6 4.2771 0.0006 0.0004 6 6 5.7556 0.0017 0.0004 7 8 6.3625 1.0549 -0.0047 8 7 6.4304 -1.1649 0.0050 9 6 7.8953 -1.1637 0.0056 10 6 8.4065 -2.6058 0.0118 11 7 9.8755 -2.6047 0.0118 12 6 10.4030 -3.9757 0.0183 13 6 11.9094 -3.9343 0.0174 14 8 12.4868 -2.8676 0.0123 15 7 12.6152 -5.0826 0.0233 16 6 13.9856 -5.0449 0.0220 17 1 14.4997 -4.0951 0.0166 18 6 14.7132 -6.2286 0.0275 19 7 14.0876 -7.3844 0.0335 20 14 16.5804 -6.1773 0.0264 21 1 17.0368 -4.7642 0.0185 22 1 17.0950 -6.8576 1.2420 23 1 17.0939 -6.8695 -1.1830 24 6 3.5774 -1.2067 0.0053 25 6 2.1964 -1.2006 0.0044 26 17 1.3233 -2.7010 0.0099 27 1 -0.3633 0.0041 1.0277 28 1 -0.3633 0.8879 -0.5173 29 1 -0.3632 -0.8921 -0.5102 30 1 1.6522 2.1332 0.0004 31 1 4.1113 2.1449 -0.0083 32 1 5.9461 -2.0054 0.0087 33 1 8.2586 -0.6531 -0.8862 34 1 8.2580 -0.6463 0.8937 35 1 8.0433 -3.1162 0.9039 36 1 8.0439 -3.1237 -0.8761 37 1 10.2367 -2.0748 0.7908 38 1 10.0540 -4.4950 0.9108 39 1 10.0539 -4.5036 -0.8692 40 1 12.1534 -5.9355 0.0277 41 1 14.5954 -8.2107 0.0370 42 1 4.1146 -2.1436 0.0091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133261413.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:34 Heat of formation + Delta-G solvation = -58.126669 kcal Electronic energy + Delta-G solvation = -24746.016283 eV Core-core repulsion = 20751.462006 eV Total energy + Delta-G solvation = -3994.554277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.69801 -39.11608 -38.32673 -36.95228 -36.34601 -34.53875 -33.83694 -33.40002 -31.37993 -31.23761 -29.66199 -27.86411 -25.97364 -24.06146 -23.41770 -22.88569 -22.10100 -20.74904 -19.31710 -18.52564 -17.90222 -16.84798 -16.32202 -15.97644 -15.90060 -15.64255 -15.57711 -15.29851 -14.70082 -14.59349 -14.52416 -14.20511 -13.92261 -13.75183 -13.44956 -13.15260 -12.95844 -12.93345 -12.47156 -12.44366 -11.97502 -11.93645 -11.82787 -11.53994 -11.48786 -11.45475 -11.42028 -11.05956 -10.34839 -10.31871 -10.23344 -9.55832 -9.53444 -9.38190 -9.16535 -8.52465 -8.15457 -7.97900 -6.43238 -3.84026 0.21313 0.60113 1.56079 2.36579 2.72810 3.15887 3.26377 3.26735 3.34285 3.88311 4.00861 4.06527 4.12474 4.33136 4.43970 4.50090 4.63651 4.82310 4.88371 4.94786 5.01248 5.04217 5.15254 5.15876 5.24481 5.34602 5.42194 5.52432 5.69396 5.70962 5.76129 5.80407 5.87098 5.92092 6.06462 6.13742 6.23352 7.05030 7.15469 7.54000 7.54516 7.85915 8.04868 8.59375 9.16541 9.52290 10.03540 10.74536 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.024829 B = 0.001523 C = 0.001437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.436485 B =18385.304202 C =19479.658109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.052 4.052 3 C -0.117 4.117 4 C -0.051 4.051 5 C -0.126 4.126 6 C 0.559 3.441 7 O -0.529 6.529 8 N -0.722 5.722 9 C 0.120 3.880 10 C 0.048 3.952 11 N -0.665 5.665 12 C 0.052 3.948 13 C 0.440 3.560 14 O -0.582 6.582 15 N -0.563 5.563 16 C -0.299 4.299 17 H 0.104 0.896 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.281 1.281 24 C -0.074 4.074 25 C -0.047 4.047 26 Cl -0.060 7.060 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.399 0.601 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.033 0.967 36 H 0.078 0.922 37 H 0.353 0.647 38 H 0.045 0.955 39 H 0.087 0.913 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.309 10.143 0.898 32.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.053 4.053 3 C -0.135 4.135 4 C -0.069 4.069 5 C -0.129 4.129 6 C 0.346 3.654 7 O -0.406 6.406 8 N -0.375 5.375 9 C -0.004 4.004 10 C -0.082 4.082 11 N -0.298 5.298 12 C -0.080 4.080 13 C 0.225 3.775 14 O -0.466 6.466 15 N -0.200 5.200 16 C -0.429 4.429 17 H 0.122 0.878 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.093 4.093 25 C -0.073 4.073 26 Cl -0.031 7.031 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.158 0.842 31 H 0.162 0.838 32 H 0.234 0.766 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.052 0.948 36 H 0.096 0.904 37 H 0.172 0.828 38 H 0.063 0.937 39 H 0.106 0.894 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -30.375 11.346 0.211 32.425 hybrid contribution 0.176 -1.645 0.903 1.885 sum -30.198 9.701 1.115 31.738 Atomic orbital electron populations 1.20966 0.89839 1.03943 1.03369 1.20030 0.97139 0.91390 0.96729 1.21043 0.93782 0.97482 1.01161 1.21412 0.93817 0.98138 0.93576 1.19895 0.93179 0.93719 1.06139 1.18083 0.86657 0.83950 0.76729 1.90818 1.69611 1.30943 1.49264 1.45827 1.07952 1.08409 1.75281 1.21342 0.77821 0.97444 1.03770 1.22088 0.89753 0.95239 1.01097 1.59939 1.04281 1.13770 1.51818 1.21671 0.95300 0.89728 1.01343 1.19773 0.87992 0.85096 0.84634 1.90537 1.71160 1.29574 1.55315 1.41860 1.07056 1.06740 1.64328 1.19770 0.81031 0.94617 1.47477 0.87808 1.25269 1.00771 0.94625 0.97283 1.69620 1.36546 0.97487 1.50661 0.85790 0.82186 0.78619 0.77696 1.19180 1.20770 1.20734 1.21190 0.92271 0.98229 0.97627 1.20669 0.92077 0.87378 1.07210 1.98383 1.76294 1.31539 1.96892 0.90123 0.90629 0.90466 0.84202 0.83770 0.76573 0.89822 0.91016 0.94843 0.90386 0.82763 0.93679 0.89438 0.77459 0.91916 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 9.61 36.01 0.35 -0.16 16 2 C -0.05 -0.32 5.89 -104.50 -0.62 -0.93 16 3 C -0.12 -0.69 9.68 -39.64 -0.38 -1.07 16 4 C -0.05 -0.39 9.59 -39.18 -0.38 -0.77 16 5 C -0.13 -1.10 5.87 -104.97 -0.62 -1.72 16 6 C 0.56 6.20 7.77 -12.33 -0.10 6.11 16 7 O -0.53 -7.85 16.35 5.31 0.09 -7.76 16 8 N -0.72 -6.69 5.51 -61.25 -0.34 -7.02 16 9 C 0.12 1.33 5.93 -4.05 -0.02 1.30 16 10 C 0.05 0.53 5.80 -3.82 -0.02 0.51 16 11 N -0.66 -10.33 6.13 -115.06 -0.70 -11.04 16 12 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 13 C 0.44 10.30 7.82 -10.98 -0.09 10.21 16 14 O -0.58 -15.81 15.78 5.54 0.09 -15.72 16 15 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 16 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 17 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 18 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 19 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 20 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 24 C -0.07 -0.53 9.32 -39.15 -0.36 -0.89 16 25 C -0.05 -0.33 6.31 -39.56 -0.25 -0.58 16 26 Cl -0.06 -0.40 27.27 -51.86 -1.41 -1.81 16 27 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.21 8.08 -51.93 -0.42 -0.21 16 29 H 0.08 0.33 6.88 -51.93 -0.36 -0.03 16 30 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 31 H 0.14 1.12 7.65 -52.49 -0.40 0.72 16 32 H 0.40 2.58 6.51 -40.82 -0.27 2.31 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.35 5.68 8.43 -39.29 -0.33 5.35 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 41 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.14 0.72 6.40 -52.49 -0.34 0.39 16 LS Contribution 377.56 15.07 5.69 5.69 Total: -1.00 -33.77 377.56 -9.04 -42.81 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -5.33 Total: 11.91 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -2.76 Total: 4.87 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.38 Total: -55.99 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.17 Total: -23.48 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.41 Total: -1.81 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.77 -9.04 -42.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133261413.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.318 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds