Wall clock time and date at job start Tue Mar 31 2020 22:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38361 * 119.85527 * 2 1 4 4 C 1.37940 * 120.15945 * 180.23622 * 3 2 1 5 5 C 1.39599 * 119.87896 * 359.51192 * 4 3 2 6 6 C 1.47849 * 120.14302 * 180.23374 * 5 4 3 7 7 O 1.21559 * 119.99216 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00678 * 180.02562 * 6 5 4 9 9 C 1.46493 * 120.00331 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47257 * 179.97438 * 9 8 6 11 11 N 1.46900 * 109.47589 * 179.97438 * 10 9 8 12 12 C 1.46894 * 111.00170 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46961 * 179.97438 * 12 11 10 14 14 O 1.21297 * 120.00066 * 0.02562 * 13 12 11 15 15 N 1.34784 * 120.00286 * 179.97438 * 13 12 11 16 16 C 1.37093 * 119.99997 * 179.97438 * 15 13 12 17 17 H 1.07996 * 120.00446 * 0.02562 * 16 15 13 18 18 C 1.38953 * 119.99969 * 180.02562 * 16 15 13 19 19 N 1.31418 * 119.99778 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00146 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47338 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47008 * 120.00454 * 20 18 16 23 23 H 1.48508 * 109.46823 * 240.00082 * 20 18 16 24 24 C 1.39538 * 119.72285 * 0.25223 * 5 4 3 25 25 C 1.38103 * 119.83953 * 0.02562 * 24 5 4 26 26 Cl 1.73601 * 119.94136 * 179.97438 * 25 24 5 27 27 H 1.09001 * 109.46894 * 270.22980 * 1 2 3 28 28 H 1.08994 * 109.47287 * 30.22768 * 1 2 3 29 29 H 1.09003 * 109.46423 * 150.23312 * 1 2 3 30 30 H 1.08002 * 119.92307 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.06486 * 179.79391 * 4 3 2 32 32 H 0.97005 * 119.99746 * 359.97438 * 8 6 5 33 33 H 1.09000 * 109.47131 * 299.99352 * 9 8 6 34 34 H 1.09001 * 109.47490 * 59.99888 * 9 8 6 35 35 H 1.09005 * 109.47233 * 299.99780 * 10 9 8 36 36 H 1.09000 * 109.47371 * 59.99899 * 10 9 8 37 37 H 1.00908 * 110.99571 * 56.03977 * 11 10 9 38 38 H 1.08995 * 109.47314 * 299.99779 * 12 11 10 39 39 H 1.09004 * 109.47201 * 60.00368 * 12 11 10 40 40 H 0.96996 * 119.99316 * 0.02562 * 15 13 12 41 41 H 0.96996 * 120.00215 * 179.97438 * 19 18 16 42 42 H 1.07998 * 120.08128 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5752 1.2073 -0.0049 5 6 4.2771 0.0006 0.0004 6 6 5.7556 0.0017 0.0004 7 8 6.3625 1.0549 -0.0047 8 7 6.4304 -1.1649 0.0050 9 6 7.8953 -1.1637 0.0056 10 6 8.4065 -2.6058 0.0118 11 7 9.8755 -2.6047 0.0118 12 6 10.4030 -3.9757 0.0183 13 6 11.9094 -3.9343 0.0174 14 8 12.4868 -2.8676 0.0123 15 7 12.6152 -5.0826 0.0233 16 6 13.9856 -5.0449 0.0220 17 1 14.4997 -4.0951 0.0166 18 6 14.7132 -6.2286 0.0275 19 7 14.0876 -7.3844 0.0335 20 14 16.5804 -6.1773 0.0264 21 1 17.0368 -4.7642 0.0185 22 1 17.0950 -6.8576 1.2420 23 1 17.0939 -6.8695 -1.1830 24 6 3.5774 -1.2067 0.0053 25 6 2.1964 -1.2006 0.0044 26 17 1.3233 -2.7010 0.0099 27 1 -0.3633 0.0041 1.0277 28 1 -0.3633 0.8879 -0.5173 29 1 -0.3632 -0.8921 -0.5102 30 1 1.6522 2.1332 0.0004 31 1 4.1113 2.1449 -0.0083 32 1 5.9461 -2.0054 0.0087 33 1 8.2586 -0.6531 -0.8862 34 1 8.2580 -0.6463 0.8937 35 1 8.0433 -3.1162 0.9039 36 1 8.0439 -3.1237 -0.8761 37 1 10.2367 -2.0748 0.7908 38 1 10.0540 -4.4950 0.9108 39 1 10.0539 -4.5036 -0.8692 40 1 12.1534 -5.9355 0.0277 41 1 14.5954 -8.2107 0.0370 42 1 4.1146 -2.1436 0.0091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133261413.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:33 Heat of formation + Delta-G solvation = -83.080253 kcal Electronic energy + Delta-G solvation = -24747.098351 eV Core-core repulsion = 20751.462006 eV Total energy + Delta-G solvation = -3995.636346 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41165 -40.17860 -39.76419 -37.58392 -37.37981 -36.02513 -35.36871 -33.98670 -33.26693 -31.90874 -30.70037 -28.60274 -27.43473 -25.61731 -23.95121 -23.67369 -22.97184 -21.48587 -21.10357 -19.92992 -19.26226 -17.77942 -17.59624 -17.25917 -16.65602 -16.43403 -16.36509 -16.31306 -16.21996 -15.79966 -15.41561 -15.20541 -15.09322 -14.81926 -14.72262 -14.19180 -14.02348 -13.53679 -13.38236 -13.32350 -13.26551 -12.95044 -12.91781 -12.61809 -12.53076 -12.41011 -12.38355 -12.31017 -12.11574 -11.94220 -11.51749 -11.20130 -10.37001 -10.31593 -10.01635 -10.00230 -9.72684 -9.39404 -8.47263 -5.95808 -0.37371 0.08393 1.04553 1.36664 1.42334 1.56353 1.65177 1.89496 2.04965 2.30213 2.63108 2.99452 3.20237 3.44075 3.57124 3.63450 3.83671 3.91327 3.99557 4.09451 4.17022 4.31458 4.37112 4.44840 4.50112 4.60398 4.61293 4.72026 4.78295 4.86704 4.91369 4.93533 5.17030 5.22820 5.24760 5.30561 5.41266 5.62916 5.83519 6.06479 6.31517 6.38328 6.59919 7.05730 7.12643 7.55983 8.11643 8.70246 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.024829 B = 0.001523 C = 0.001437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.436485 B =18385.304202 C =19479.658109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.049 4.049 3 C -0.112 4.112 4 C -0.061 4.061 5 C -0.143 4.143 6 C 0.557 3.443 7 O -0.576 6.576 8 N -0.708 5.708 9 C 0.127 3.873 10 C 0.057 3.943 11 N -0.685 5.685 12 C 0.068 3.932 13 C 0.435 3.565 14 O -0.625 6.625 15 N -0.572 5.572 16 C -0.335 4.335 17 H 0.078 0.922 18 C -0.012 4.012 19 N -0.919 5.919 20 Si 0.992 3.008 21 H -0.275 1.275 22 H -0.270 1.270 23 H -0.271 1.271 24 C -0.071 4.071 25 C -0.058 4.058 26 Cl -0.057 7.057 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.167 0.833 31 H 0.138 0.862 32 H 0.415 0.585 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.346 0.654 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.396 9.096 1.002 34.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.050 4.050 3 C -0.130 4.130 4 C -0.080 4.080 5 C -0.146 4.146 6 C 0.346 3.654 7 O -0.457 6.457 8 N -0.361 5.361 9 C 0.003 3.997 10 C -0.072 4.072 11 N -0.318 5.318 12 C -0.064 4.064 13 C 0.223 3.777 14 O -0.512 6.512 15 N -0.209 5.209 16 C -0.465 4.465 17 H 0.096 0.904 18 C -0.211 4.211 19 N -0.560 5.560 20 Si 0.816 3.184 21 H -0.199 1.199 22 H -0.195 1.195 23 H -0.196 1.196 24 C -0.090 4.090 25 C -0.085 4.085 26 Cl -0.028 7.028 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.184 0.816 31 H 0.155 0.845 32 H 0.253 0.747 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.165 0.835 38 H 0.091 0.909 39 H 0.127 0.873 40 H 0.232 0.768 41 H 0.087 0.913 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -32.515 10.238 0.313 34.090 hybrid contribution 0.711 -1.291 0.868 1.711 sum -31.803 8.947 1.181 33.059 Atomic orbital electron populations 1.21041 0.88191 1.04728 1.04169 1.20363 0.98389 0.91073 0.95191 1.21297 0.92957 0.98645 1.00106 1.21519 0.94815 0.97706 0.93963 1.19733 0.91655 0.94835 1.08415 1.18494 0.87709 0.83543 0.75695 1.90789 1.70701 1.32552 1.51635 1.45653 1.07187 1.08871 1.74400 1.21115 0.78844 0.97450 1.02300 1.22081 0.86932 0.95192 1.02981 1.59902 1.07034 1.12898 1.51985 1.21527 0.90131 0.91145 1.03625 1.20939 0.90773 0.83797 0.82229 1.90506 1.72959 1.31048 1.56660 1.41918 1.06441 1.07584 1.65002 1.19707 0.82679 0.94155 1.49937 0.90428 1.26018 1.04907 0.93980 0.96236 1.69670 1.38113 0.97896 1.50320 0.84878 0.76941 0.78215 0.78342 1.19928 1.19534 1.19610 1.21298 0.92569 0.98217 0.96898 1.20807 0.92141 0.87910 1.07592 1.98385 1.76133 1.31364 1.96898 0.89178 0.88961 0.90612 0.81591 0.84452 0.74686 0.91924 0.92099 0.92374 0.88765 0.83493 0.90875 0.87274 0.76848 0.91279 0.82869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.69 9.61 71.24 0.68 -0.01 16 2 C -0.05 -0.50 5.89 -19.78 -0.12 -0.62 16 3 C -0.11 -1.13 9.68 22.23 0.22 -0.92 16 4 C -0.06 -0.93 9.59 22.53 0.22 -0.71 16 5 C -0.14 -2.43 5.87 -20.09 -0.12 -2.55 16 6 C 0.56 12.46 7.77 86.79 0.67 13.14 16 7 O -0.58 -17.84 16.35 -3.90 -0.06 -17.91 16 8 N -0.71 -12.51 5.51 -465.98 -2.57 -15.08 16 9 C 0.13 2.77 5.93 86.38 0.51 3.29 16 10 C 0.06 1.14 5.80 86.30 0.50 1.64 16 11 N -0.69 -20.55 6.13 -517.94 -3.17 -23.72 16 12 C 0.07 2.19 6.17 85.56 0.53 2.72 16 13 C 0.44 20.48 7.82 87.66 0.69 21.16 16 14 O -0.63 -34.86 15.78 -3.08 -0.05 -34.91 16 15 N -0.57 -29.08 5.29 -306.98 -1.62 -30.70 16 16 C -0.34 -19.07 9.68 84.04 0.81 -18.26 16 17 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 18 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 19 N -0.92 -49.18 13.05 21.66 0.28 -48.89 16 20 Si 0.99 42.95 29.55 68.60 2.03 44.98 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 24 C -0.07 -0.91 9.32 22.55 0.21 -0.70 16 25 C -0.06 -0.71 6.31 22.29 0.14 -0.57 16 26 Cl -0.06 -0.65 27.27 -2.72 -0.07 -0.72 16 27 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.09 0.22 8.08 -2.39 -0.02 0.20 16 29 H 0.08 0.47 6.88 -2.39 -0.02 0.45 16 30 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 31 H 0.14 2.22 7.65 -2.91 -0.02 2.20 16 32 H 0.41 4.53 6.51 -92.70 -0.60 3.93 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.35 11.11 8.43 -89.69 -0.76 10.36 16 38 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.11 3.09 8.14 -2.38 -0.02 3.07 16 40 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 41 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 42 H 0.15 1.30 6.40 -2.91 -0.02 1.28 16 Total: -1.00 -74.85 377.56 -0.82 -75.68 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: -1.00 Total: 33.81 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: 5.41 Total: 17.48 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -7.08 Total: -118.39 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -0.11 Total: -52.82 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.07 Total: -0.72 kcal Total: -74.85 -0.82 -75.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133261413.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.405 kcal (2) G-P(sol) polarization free energy of solvation -74.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds