Wall clock time and date at job start Tue Mar 31 2020 22:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37938 * 120.06705 * 2 1 4 4 C 1.38386 * 120.18124 * 180.27654 * 3 2 1 5 5 C 1.38309 * 120.31551 * 359.73730 * 4 3 2 6 6 C 1.38112 * 120.13087 * 359.97438 * 5 4 3 7 7 Cl 1.73605 * 120.09218 * 180.02562 * 6 5 4 8 8 C 1.39583 * 120.06653 * 179.73579 * 2 1 3 9 9 C 1.47770 * 120.15713 * 0.02562 * 8 2 1 10 10 O 1.21563 * 120.00150 * 269.72306 * 9 8 2 11 11 N 1.34777 * 119.99858 * 89.44779 * 9 8 2 12 12 C 1.46499 * 120.00195 * 180.27937 * 11 9 8 13 13 C 1.52997 * 109.47551 * 179.97438 * 12 11 9 14 14 N 1.46893 * 109.47217 * 179.97438 * 13 12 11 15 15 C 1.46904 * 111.00073 * 179.97438 * 14 13 12 16 16 C 1.50692 * 109.47509 * 179.97438 * 15 14 13 17 17 O 1.21292 * 119.99878 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00438 * 180.02562 * 16 15 14 19 19 C 1.37091 * 120.00279 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00342 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00219 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00060 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00374 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47305 * 89.99553 * 23 21 19 25 25 H 1.48502 * 109.47123 * 210.00022 * 23 21 19 26 26 H 1.48504 * 109.46868 * 329.99844 * 23 21 19 27 27 H 1.09001 * 109.47270 * 270.25898 * 1 2 3 28 28 H 1.08999 * 109.47224 * 30.26003 * 1 2 3 29 29 H 1.09001 * 109.46947 * 150.25964 * 1 2 3 30 30 H 1.08001 * 119.91275 * 359.97438 * 3 2 1 31 31 H 1.08005 * 119.83804 * 179.71594 * 4 3 2 32 32 H 1.08003 * 119.93317 * 180.02562 * 5 4 3 33 33 H 0.97000 * 119.99736 * 0.27209 * 11 9 8 34 34 H 1.08998 * 109.46795 * 299.99885 * 12 11 9 35 35 H 1.09002 * 109.47196 * 59.99076 * 12 11 9 36 36 H 1.09007 * 109.46479 * 299.99856 * 13 12 11 37 37 H 1.09003 * 109.47114 * 59.99068 * 13 12 11 38 38 H 1.00902 * 111.00363 * 56.04519 * 14 13 12 39 39 H 1.09005 * 109.47442 * 300.00371 * 15 14 13 40 40 H 1.09004 * 109.46880 * 60.00063 * 15 14 13 41 41 H 0.97000 * 119.99589 * 0.02562 * 18 16 15 42 42 H 0.97001 * 120.00389 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1938 0.0000 4 6 3.5819 1.1965 -0.0058 5 6 4.2824 0.0040 -0.0061 6 6 3.6036 -1.1988 -0.0001 7 17 4.4839 -2.6951 0.0001 8 6 2.2063 -1.2080 0.0056 9 6 1.4724 -2.4906 0.0109 10 8 1.1746 -3.0161 1.0659 11 7 1.1285 -3.0750 -1.1538 12 6 0.3956 -4.3435 -1.1486 13 6 0.1314 -4.7859 -2.5892 14 7 -0.6029 -6.0581 -2.5838 15 6 -0.8754 -6.5145 -3.9533 16 6 -1.6276 -7.8194 -3.9077 17 8 -1.9087 -8.3204 -2.8395 18 7 -1.9872 -8.4305 -5.0539 19 6 -2.6711 -9.6179 -5.0124 20 1 -2.9214 -10.0640 -4.0612 21 6 -3.0413 -10.2481 -6.1941 22 7 -2.7363 -9.7057 -7.3516 23 14 -3.9738 -11.8658 -6.1376 24 1 -5.4337 -11.5951 -6.1155 25 1 -3.6380 -12.6729 -7.3380 26 1 -3.5908 -12.6153 -4.9141 27 1 -0.3634 0.0046 1.0277 28 1 -0.3633 0.8876 -0.5179 29 1 -0.3633 -0.8923 -0.5098 30 1 1.6577 2.1289 -0.0004 31 1 4.1174 2.1345 -0.0104 32 1 5.3624 0.0133 -0.0102 33 1 1.3661 -2.6556 -1.9956 34 1 0.9874 -5.1029 -0.6376 35 1 -0.5537 -4.2125 -0.6291 36 1 -0.4607 -4.0263 -3.0997 37 1 1.0806 -4.9167 -3.1089 38 1 -1.4571 -5.9805 -2.0523 39 1 -1.4750 -5.7670 -4.4729 40 1 0.0666 -6.6569 -4.4830 41 1 -1.7614 -8.0304 -5.9082 42 1 -2.9945 -10.1458 -8.1765 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133315331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:15 Heat of formation + Delta-G solvation = -57.853317 kcal Electronic energy + Delta-G solvation = -25289.873049 eV Core-core repulsion = 21295.330625 eV Total energy + Delta-G solvation = -3994.542424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.72582 -38.91983 -38.30737 -36.95480 -36.30740 -34.39616 -33.76882 -33.32868 -31.66827 -31.23297 -29.33329 -27.68136 -26.13759 -24.42908 -23.55024 -22.34449 -22.07872 -20.74418 -19.29764 -18.25071 -17.88979 -16.72241 -16.68794 -16.38045 -16.13314 -15.78667 -15.34331 -14.81832 -14.51316 -14.46325 -14.31246 -14.02550 -13.81091 -13.70072 -13.40158 -13.26443 -13.17645 -13.03803 -12.42557 -12.19579 -11.98909 -11.93010 -11.75880 -11.53225 -11.48046 -11.43633 -11.35960 -11.03742 -10.39540 -10.28204 -10.22032 -9.51930 -9.41503 -9.32036 -9.20248 -8.51404 -8.14091 -7.97400 -6.42667 -3.83467 0.44947 0.62120 1.62611 2.26551 2.74142 3.01038 3.17660 3.26488 3.32858 3.88999 4.07386 4.13410 4.20835 4.31382 4.43416 4.63953 4.69228 4.79575 4.87766 4.96788 5.11587 5.14743 5.16437 5.17588 5.25095 5.36931 5.54045 5.58662 5.70617 5.71434 5.78988 5.85882 5.89355 5.93426 6.11434 6.16588 6.24277 7.06788 7.17354 7.54641 7.55684 7.87620 8.05172 8.59984 9.16970 9.52827 10.04207 10.75024 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.024998 B = 0.001691 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.828676 B =16557.252079 C =16866.300328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.038 4.038 3 C -0.119 4.119 4 C -0.088 4.088 5 C -0.119 4.119 6 C -0.003 4.003 7 Cl -0.051 7.051 8 C -0.119 4.119 9 C 0.566 3.434 10 O -0.519 6.519 11 N -0.718 5.718 12 C 0.119 3.881 13 C 0.050 3.950 14 N -0.665 5.665 15 C 0.052 3.948 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.401 0.599 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.033 0.967 37 H 0.078 0.922 38 H 0.352 0.648 39 H 0.045 0.955 40 H 0.087 0.913 41 H 0.392 0.608 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.089 26.977 9.372 31.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.039 4.039 3 C -0.137 4.137 4 C -0.106 4.106 5 C -0.137 4.137 6 C -0.031 4.031 7 Cl -0.022 7.022 8 C -0.123 4.123 9 C 0.350 3.650 10 O -0.394 6.394 11 N -0.370 5.370 12 C -0.004 4.004 13 C -0.080 4.080 14 N -0.298 5.298 15 C -0.080 4.080 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.153 0.847 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.236 0.764 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.172 0.828 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.225 0.775 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.261 25.610 10.728 30.770 hybrid contribution -0.677 0.149 -1.370 1.535 sum 12.584 25.759 9.359 30.158 Atomic orbital electron populations 1.20926 0.89858 1.03603 1.03600 1.19915 0.96569 0.91040 0.96382 1.21113 0.94297 0.97635 1.00631 1.21276 0.94161 0.97864 0.97346 1.21035 1.00843 0.90341 1.01503 1.20954 0.90822 0.88540 1.02760 1.98425 1.75357 1.31846 1.96557 1.19714 0.91980 0.94248 1.06389 1.17982 0.78891 0.83840 0.84261 1.90852 1.53629 1.64050 1.30843 1.45901 1.58170 1.24576 1.08311 1.21342 0.97111 0.84498 0.97444 1.22074 0.99668 0.91067 0.95238 1.59933 1.28699 1.27424 1.13755 1.21670 1.00344 0.96234 0.89768 1.19772 0.85247 0.87368 0.85110 1.90536 1.59417 1.67223 1.29408 1.41852 1.50012 1.21356 1.06759 1.19712 1.30929 0.97656 0.94591 0.87876 1.25268 0.98171 0.99897 0.94633 1.69611 1.47089 1.40150 0.97485 0.85846 0.79383 0.81136 0.77864 1.20422 1.20919 1.19377 0.89962 0.90373 0.91067 0.84653 0.84527 0.84275 0.76439 0.89899 0.91094 0.94867 0.90378 0.82806 0.93702 0.89451 0.77457 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 9.62 36.00 0.35 -0.46 16 2 C -0.04 -0.29 5.91 -104.23 -0.62 -0.91 16 3 C -0.12 -0.66 9.69 -39.64 -0.38 -1.05 16 4 C -0.09 -0.45 10.04 -39.50 -0.40 -0.85 16 5 C -0.12 -0.79 9.82 -39.60 -0.39 -1.17 16 6 C 0.00 -0.03 6.35 -39.07 -0.25 -0.28 16 7 Cl -0.05 -0.52 28.04 -51.86 -1.45 -1.97 16 8 C -0.12 -1.17 5.63 -104.94 -0.59 -1.76 16 9 C 0.57 6.71 4.78 -12.36 -0.06 6.65 16 10 O -0.52 -8.27 17.11 5.31 0.09 -8.17 16 11 N -0.72 -7.03 5.55 -61.28 -0.34 -7.37 16 12 C 0.12 1.36 5.93 -4.04 -0.02 1.34 16 13 C 0.05 0.56 5.80 -3.83 -0.02 0.54 16 14 N -0.66 -10.44 6.13 -115.06 -0.70 -11.14 16 15 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 16 C 0.44 10.34 7.82 -10.99 -0.09 10.25 16 17 O -0.58 -15.87 15.78 5.55 0.09 -15.78 16 18 N -0.56 -14.22 5.29 -10.97 -0.06 -14.28 16 19 C -0.30 -8.36 9.68 -14.94 -0.14 -8.50 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 23 Si 0.93 21.08 29.55 -169.99 -5.02 16.05 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.34 8.09 -51.93 -0.42 -0.08 16 29 H 0.07 0.53 7.07 -51.93 -0.37 0.16 16 30 H 0.14 0.43 8.06 -52.49 -0.42 0.00 16 31 H 0.14 0.32 8.06 -52.48 -0.42 -0.10 16 32 H 0.14 0.67 8.06 -52.48 -0.42 0.24 16 33 H 0.40 2.94 8.46 -40.82 -0.35 2.59 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.35 5.71 8.43 -39.29 -0.33 5.38 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 42 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 381.13 15.07 5.74 5.74 Total: -1.00 -34.39 381.13 -9.20 -43.59 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -5.52 Total: 11.91 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -2.74 Total: 5.16 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.38 Total: -56.52 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.18 Total: -23.95 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.45 Total: -1.97 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.39 -9.20 -43.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133315331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.268 kcal (2) G-P(sol) polarization free energy of solvation -34.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds