Wall clock time and date at job start Tue Mar 31 2020 22:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37938 * 120.06705 * 2 1 4 4 C 1.38386 * 120.18124 * 180.27654 * 3 2 1 5 5 C 1.38309 * 120.31551 * 359.73730 * 4 3 2 6 6 C 1.38112 * 120.13087 * 359.97438 * 5 4 3 7 7 Cl 1.73605 * 120.09218 * 180.02562 * 6 5 4 8 8 C 1.39583 * 120.06653 * 179.73579 * 2 1 3 9 9 C 1.47770 * 120.15713 * 0.02562 * 8 2 1 10 10 O 1.21563 * 120.00150 * 269.72306 * 9 8 2 11 11 N 1.34777 * 119.99858 * 89.44779 * 9 8 2 12 12 C 1.46499 * 120.00195 * 180.27937 * 11 9 8 13 13 C 1.52997 * 109.47551 * 179.97438 * 12 11 9 14 14 N 1.46893 * 109.47217 * 179.97438 * 13 12 11 15 15 C 1.46904 * 111.00073 * 179.97438 * 14 13 12 16 16 C 1.50692 * 109.47509 * 179.97438 * 15 14 13 17 17 O 1.21292 * 119.99878 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00438 * 180.02562 * 16 15 14 19 19 C 1.37091 * 120.00279 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00342 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00219 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00060 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00374 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47305 * 89.99553 * 23 21 19 25 25 H 1.48502 * 109.47123 * 210.00022 * 23 21 19 26 26 H 1.48504 * 109.46868 * 329.99844 * 23 21 19 27 27 H 1.09001 * 109.47270 * 270.25898 * 1 2 3 28 28 H 1.08999 * 109.47224 * 30.26003 * 1 2 3 29 29 H 1.09001 * 109.46947 * 150.25964 * 1 2 3 30 30 H 1.08001 * 119.91275 * 359.97438 * 3 2 1 31 31 H 1.08005 * 119.83804 * 179.71594 * 4 3 2 32 32 H 1.08003 * 119.93317 * 180.02562 * 5 4 3 33 33 H 0.97000 * 119.99736 * 0.27209 * 11 9 8 34 34 H 1.08998 * 109.46795 * 299.99885 * 12 11 9 35 35 H 1.09002 * 109.47196 * 59.99076 * 12 11 9 36 36 H 1.09007 * 109.46479 * 299.99856 * 13 12 11 37 37 H 1.09003 * 109.47114 * 59.99068 * 13 12 11 38 38 H 1.00902 * 111.00363 * 56.04519 * 14 13 12 39 39 H 1.09005 * 109.47442 * 300.00371 * 15 14 13 40 40 H 1.09004 * 109.46880 * 60.00063 * 15 14 13 41 41 H 0.97000 * 119.99589 * 0.02562 * 18 16 15 42 42 H 0.97001 * 120.00389 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1938 0.0000 4 6 3.5819 1.1965 -0.0058 5 6 4.2824 0.0040 -0.0061 6 6 3.6036 -1.1988 -0.0001 7 17 4.4839 -2.6951 0.0001 8 6 2.2063 -1.2080 0.0056 9 6 1.4724 -2.4906 0.0109 10 8 1.1746 -3.0161 1.0659 11 7 1.1285 -3.0750 -1.1538 12 6 0.3956 -4.3435 -1.1486 13 6 0.1314 -4.7859 -2.5892 14 7 -0.6029 -6.0581 -2.5838 15 6 -0.8754 -6.5145 -3.9533 16 6 -1.6276 -7.8194 -3.9077 17 8 -1.9087 -8.3204 -2.8395 18 7 -1.9872 -8.4305 -5.0539 19 6 -2.6711 -9.6179 -5.0124 20 1 -2.9214 -10.0640 -4.0612 21 6 -3.0413 -10.2481 -6.1941 22 7 -2.7363 -9.7057 -7.3516 23 14 -3.9738 -11.8658 -6.1376 24 1 -5.4337 -11.5951 -6.1155 25 1 -3.6380 -12.6729 -7.3380 26 1 -3.5908 -12.6153 -4.9141 27 1 -0.3634 0.0046 1.0277 28 1 -0.3633 0.8876 -0.5179 29 1 -0.3633 -0.8923 -0.5098 30 1 1.6577 2.1289 -0.0004 31 1 4.1174 2.1345 -0.0104 32 1 5.3624 0.0133 -0.0102 33 1 1.3661 -2.6556 -1.9956 34 1 0.9874 -5.1029 -0.6376 35 1 -0.5537 -4.2125 -0.6291 36 1 -0.4607 -4.0263 -3.0997 37 1 1.0806 -4.9167 -3.1089 38 1 -1.4571 -5.9805 -2.0523 39 1 -1.4750 -5.7670 -4.4729 40 1 0.0666 -6.6569 -4.4830 41 1 -1.7614 -8.0304 -5.9082 42 1 -2.9945 -10.1458 -8.1765 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133315331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:14 Heat of formation + Delta-G solvation = -83.999593 kcal Electronic energy + Delta-G solvation = -25291.006836 eV Core-core repulsion = 21295.330625 eV Total energy + Delta-G solvation = -3995.676211 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.47314 -40.18261 -39.60528 -37.62915 -37.50128 -36.01362 -35.27082 -33.86205 -33.27570 -32.29257 -30.44733 -28.26762 -27.64255 -25.82280 -24.54617 -23.14173 -22.81726 -21.53710 -21.10971 -19.92991 -19.00340 -17.78044 -17.45926 -17.39174 -17.20981 -16.99525 -16.52521 -16.08005 -15.87227 -15.75027 -15.18023 -15.06881 -14.92929 -14.70219 -14.49882 -14.32116 -13.98036 -13.85724 -13.53051 -13.52123 -13.33457 -12.94609 -12.71764 -12.62958 -12.50881 -12.43897 -12.41304 -12.34011 -12.12707 -12.04746 -11.51497 -11.19987 -10.37555 -10.27099 -10.02166 -9.98096 -9.73674 -9.40003 -8.47375 -5.95986 -0.10411 0.11631 0.98236 1.36856 1.37683 1.41761 1.54406 1.90918 2.04503 2.29791 2.48217 2.98489 3.19945 3.47087 3.60842 3.63927 3.85125 3.90987 4.07151 4.19660 4.23260 4.30873 4.38307 4.43363 4.49073 4.56496 4.60383 4.65190 4.76630 4.85114 4.90053 5.06979 5.11801 5.21870 5.27336 5.37111 5.40673 5.73111 5.82736 6.05799 6.31174 6.33459 6.59562 7.02114 7.12170 7.55494 8.11187 8.69887 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.024998 B = 0.001691 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.828676 B =16557.252079 C =16866.300328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.047 4.047 3 C -0.112 4.112 4 C -0.077 4.077 5 C -0.120 4.120 6 C -0.021 4.021 7 Cl -0.073 7.073 8 C -0.143 4.143 9 C 0.568 3.432 10 O -0.570 6.570 11 N -0.703 5.703 12 C 0.128 3.872 13 C 0.060 3.940 14 N -0.686 5.686 15 C 0.068 3.932 16 C 0.435 3.565 17 O -0.625 6.625 18 N -0.572 5.572 19 C -0.335 4.335 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.993 3.007 24 H -0.270 1.270 25 H -0.270 1.270 26 H -0.275 1.275 27 H 0.075 0.925 28 H 0.105 0.895 29 H 0.056 0.944 30 H 0.167 0.833 31 H 0.173 0.827 32 H 0.156 0.844 33 H 0.416 0.584 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.347 0.653 39 H 0.074 0.926 40 H 0.108 0.892 41 H 0.398 0.602 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.672 29.775 8.146 33.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.048 4.048 3 C -0.130 4.130 4 C -0.095 4.095 5 C -0.139 4.139 6 C -0.048 4.048 7 Cl -0.044 7.044 8 C -0.147 4.147 9 C 0.354 3.646 10 O -0.449 6.449 11 N -0.355 5.355 12 C 0.004 3.996 13 C -0.069 4.069 14 N -0.319 5.319 15 C -0.064 4.064 16 C 0.223 3.777 17 O -0.512 6.512 18 N -0.209 5.209 19 C -0.465 4.465 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.200 1.200 27 H 0.093 0.907 28 H 0.123 0.877 29 H 0.075 0.925 30 H 0.185 0.815 31 H 0.191 0.809 32 H 0.174 0.826 33 H 0.253 0.747 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.165 0.835 39 H 0.092 0.908 40 H 0.126 0.874 41 H 0.232 0.768 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.868 28.451 9.441 33.029 hybrid contribution -0.823 -0.598 -0.959 1.397 sum 13.046 27.853 8.482 31.905 Atomic orbital electron populations 1.20954 0.89427 1.04216 1.03360 1.20132 0.97066 0.91070 0.96489 1.21510 0.94744 0.97887 0.98839 1.21728 0.94159 0.98568 0.95039 1.21341 1.01875 0.89906 1.00743 1.21134 0.90618 0.88594 1.04462 1.98411 1.75718 1.33484 1.96784 1.19650 0.92285 0.93743 1.09048 1.18389 0.78120 0.84348 0.83714 1.90815 1.55819 1.65644 1.32604 1.45750 1.57262 1.23759 1.08721 1.21115 0.96417 0.84595 0.97518 1.22048 1.00012 0.89801 0.95084 1.59890 1.28769 1.30242 1.12967 1.21524 1.00635 0.93114 0.91125 1.20922 0.84139 0.88855 0.83828 1.90505 1.60874 1.68909 1.30887 1.41912 1.50346 1.21068 1.07588 1.19659 1.33171 0.99484 0.94145 0.90444 1.26028 0.98433 1.02766 0.94000 1.69663 1.47191 1.41227 0.97880 0.84934 0.78336 0.77208 0.77894 1.19551 1.19468 1.19984 0.90658 0.87682 0.92490 0.81542 0.80950 0.82594 0.74734 0.92399 0.91866 0.92176 0.89094 0.83451 0.90776 0.87408 0.76839 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 9.62 71.23 0.69 -0.77 16 2 C -0.05 -0.64 5.91 -19.61 -0.12 -0.75 16 3 C -0.11 -0.86 9.69 22.23 0.22 -0.65 16 4 C -0.08 -0.50 10.04 22.32 0.22 -0.28 16 5 C -0.12 -1.33 9.82 22.26 0.22 -1.11 16 6 C -0.02 -0.37 6.35 22.60 0.14 -0.22 16 7 Cl -0.07 -1.51 28.04 -2.72 -0.08 -1.59 16 8 C -0.14 -2.75 5.63 -20.07 -0.11 -2.86 16 9 C 0.57 13.88 4.78 86.76 0.41 14.30 16 10 O -0.57 -19.24 17.11 -3.91 -0.07 -19.31 16 11 N -0.70 -13.76 5.55 -466.05 -2.58 -16.34 16 12 C 0.13 2.95 5.93 86.38 0.51 3.47 16 13 C 0.06 1.25 5.80 86.30 0.50 1.75 16 14 N -0.69 -21.05 6.13 -517.93 -3.17 -24.22 16 15 C 0.07 2.24 6.17 85.55 0.53 2.76 16 16 C 0.43 20.64 7.82 87.65 0.69 21.32 16 17 O -0.63 -35.10 15.78 -3.07 -0.05 -35.14 16 18 N -0.57 -29.22 5.29 -307.00 -1.62 -30.84 16 19 C -0.33 -19.12 9.68 84.04 0.81 -18.31 16 20 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 22 N -0.92 -49.31 13.05 21.66 0.28 -49.02 16 23 Si 0.99 43.10 29.55 68.60 2.03 45.13 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.10 0.62 8.09 -2.39 -0.02 0.60 16 29 H 0.06 0.82 7.07 -2.39 -0.02 0.81 16 30 H 0.17 0.24 8.06 -2.91 -0.02 0.22 16 31 H 0.17 -0.09 8.06 -2.91 -0.02 -0.11 16 32 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 33 H 0.42 5.66 8.46 -92.71 -0.78 4.88 16 34 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.35 11.28 8.43 -89.69 -0.76 10.53 16 39 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 40 H 0.11 3.14 8.14 -2.38 -0.02 3.12 16 41 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 42 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -77.83 381.13 -1.27 -79.10 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: -1.19 Total: 33.79 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: 5.18 Total: 18.45 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -7.10 Total: -120.43 kcal Atomic # 8 Polarization: -54.34 SS G_CDS: -0.12 Total: -54.45 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.59 kcal Total: -77.83 -1.27 -79.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133315331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.903 kcal (2) G-P(sol) polarization free energy of solvation -77.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds