Wall clock time and date at job start Tue Mar 31 2020 22:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86800 * 119.99638 * 2 1 4 4 H 1.48497 * 109.47125 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46894 * 299.99937 * 3 2 1 6 6 H 1.48496 * 109.47297 * 59.99981 * 3 2 1 7 7 C 1.39936 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00047 * 162.59457 * 7 2 1 9 9 C 1.41442 * 120.00050 * 342.59916 * 7 2 1 10 10 C 1.40780 * 120.17396 * 154.91441 * 9 7 2 11 11 C 1.37710 * 120.03921 * 180.02562 * 10 9 7 12 12 C 1.38377 * 120.41008 * 359.77948 * 11 10 9 13 13 C 1.39882 * 120.35747 * 0.48133 * 12 11 10 14 14 C 1.47887 * 120.02539 * 179.78607 * 13 12 11 15 15 O 1.21543 * 119.99730 * 179.71931 * 14 13 12 16 16 N 1.34774 * 119.99957 * 359.71231 * 14 13 12 17 17 C 1.46494 * 119.99998 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47322 * 180.02562 * 17 16 14 19 19 N 1.31256 * 126.20168 * 269.69409 * 18 17 16 20 20 N 1.28808 * 110.03655 * 179.81882 * 19 18 17 21 21 C 1.31383 * 109.26364 * 0.44370 * 20 19 18 22 22 C 1.46895 * 134.26881 * 179.78062 * 21 20 19 23 23 O 1.21749 * 120.78207 * 0.02562 * 22 21 20 24 24 N 1.35152 * 118.43128 * 180.02562 * 22 21 20 25 25 H 0.96991 * 119.85239 * 179.97438 * 24 22 21 26 26 C 1.38152 * 120.28754 * 359.94022 * 24 22 21 27 27 C 1.32810 * 121.84561 * 0.02562 * 26 24 22 28 28 N 1.34473 * 126.20048 * 89.99749 * 18 17 16 29 29 C 1.39028 * 119.94780 * 359.50140 * 13 12 11 30 30 H 0.96994 * 120.00356 * 0.02562 * 1 2 3 31 31 H 1.07996 * 119.98307 * 0.02562 * 10 9 7 32 32 H 1.07997 * 119.79722 * 180.02562 * 11 10 9 33 33 H 1.08001 * 119.82249 * 180.23131 * 12 11 10 34 34 H 0.97003 * 120.00324 * 0.02562 * 16 14 13 35 35 H 1.08996 * 109.47204 * 60.00439 * 17 16 14 36 36 H 1.08998 * 109.47466 * 300.00199 * 17 16 14 37 37 H 1.08001 * 119.07432 * 180.02562 * 26 24 22 38 38 H 1.08001 * 119.45601 * 180.02562 * 27 26 24 39 39 H 1.08004 * 120.20302 * 180.23990 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0510 -1.2334 -0.2792 9 6 1.3494 -2.4086 0.3674 10 6 1.8191 -3.6485 -0.1060 11 6 1.1754 -4.8119 0.2525 12 6 0.0683 -4.7730 1.0817 13 6 -0.4160 -3.5499 1.5575 14 6 -1.6026 -3.5165 2.4395 15 8 -2.0199 -2.4539 2.8566 16 7 -2.2213 -4.6642 2.7805 17 6 -3.3971 -4.6310 3.6537 18 6 -3.8947 -6.0354 3.8799 19 7 -4.7827 -6.6701 3.1508 20 7 -4.9744 -7.8541 3.6205 21 6 -4.2201 -8.0266 4.6823 22 6 -4.0113 -9.1358 5.6225 23 8 -4.6160 -10.1845 5.4930 24 7 -3.1320 -8.9646 6.6345 25 1 -2.9785 -9.6833 7.2674 26 6 -2.4505 -7.7706 6.7709 27 6 -2.6301 -6.7609 5.9271 28 7 -3.5136 -6.8635 4.8685 29 6 0.2226 -2.3663 1.2053 30 1 -0.4850 0.8400 -0.0004 31 1 2.6846 -3.6873 -0.7507 32 1 1.5392 -5.7609 -0.1126 33 1 -0.4270 -5.6915 1.3599 34 1 -1.8881 -5.5123 2.4477 35 1 -4.1820 -4.0384 3.1839 36 1 -3.1269 -4.1833 4.6101 37 1 -1.7521 -7.6552 7.5866 38 1 -2.0764 -5.8446 6.0698 39 1 -0.1455 -1.4200 1.5734 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133665965.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:44 Heat of formation + Delta-G solvation = 61.009440 kcal Electronic energy + Delta-G solvation = -27449.698334 eV Core-core repulsion = 23359.202693 eV Total energy + Delta-G solvation = -4090.495641 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.11853 -40.62423 -39.36393 -37.96778 -37.15274 -35.21730 -34.60788 -33.78710 -31.70487 -30.64236 -30.17999 -29.51811 -27.20312 -25.45116 -25.29879 -24.46547 -22.62407 -21.59568 -20.99141 -19.83572 -19.54035 -19.27959 -18.39358 -17.86482 -17.35507 -16.49958 -16.22985 -15.80926 -15.27343 -15.14112 -14.94781 -14.81677 -14.65490 -14.42300 -13.86116 -13.40490 -13.23845 -13.19230 -12.92853 -12.73174 -12.57969 -12.18070 -11.78015 -11.71459 -11.28876 -11.22643 -11.14270 -11.04122 -10.80808 -10.55346 -10.18355 -9.99100 -9.76432 -9.28704 -9.20234 -9.00465 -8.84714 -7.72670 -7.59428 -6.86003 -4.47861 0.29965 0.77902 1.69753 1.90051 2.05830 2.07986 2.71597 2.74161 3.04419 3.08146 3.10113 3.28958 3.44023 3.66462 3.72548 3.87312 4.00233 4.19391 4.36568 4.56350 4.80866 4.94767 5.28770 5.31671 5.44112 5.52933 5.65530 5.72958 5.93062 5.99884 6.18833 6.33597 6.47304 6.63854 6.90041 6.93022 7.05129 7.13922 7.29802 7.57487 7.64757 7.80754 7.92413 8.00128 8.09907 8.43039 8.68902 8.74598 8.77101 10.08813 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022264 B = 0.002313 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.347928 B =12104.327252 C =12377.388925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.458 4.458 8 H 0.082 0.918 9 C 0.098 3.902 10 C -0.209 4.209 11 C -0.096 4.096 12 C -0.218 4.218 13 C -0.128 4.128 14 C 0.571 3.429 15 O -0.539 6.539 16 N -0.736 5.736 17 C 0.209 3.791 18 C 0.192 3.808 19 N -0.253 5.253 20 N -0.203 5.203 21 C 0.103 3.897 22 C 0.600 3.400 23 O -0.480 6.480 24 N -0.638 5.638 25 H 0.431 0.569 26 C 0.094 3.906 27 C -0.027 4.027 28 N -0.381 5.381 29 C -0.090 4.090 30 H 0.285 0.715 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.403 0.597 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.192 0.808 38 H 0.187 0.813 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.249 -11.341 15.717 19.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.147 4.147 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.096 3.904 10 C -0.229 4.229 11 C -0.115 4.115 12 C -0.238 4.238 13 C -0.131 4.131 14 C 0.363 3.637 15 O -0.416 6.416 16 N -0.392 5.392 17 C 0.083 3.917 18 C -0.073 4.073 19 N -0.097 5.097 20 N -0.050 5.050 21 C -0.159 4.159 22 C 0.385 3.615 23 O -0.349 6.349 24 N -0.282 5.282 25 H 0.271 0.729 26 C -0.028 4.028 27 C -0.145 4.145 28 N -0.067 5.067 29 C -0.110 4.110 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.239 0.761 35 H 0.127 0.873 36 H 0.109 0.891 37 H 0.209 0.791 38 H 0.204 0.796 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.201 -11.186 14.701 18.945 hybrid contribution 1.440 0.273 1.007 1.778 sum -2.762 -10.913 15.708 19.325 Atomic orbital electron populations 1.69788 1.07567 1.29787 1.33502 1.25974 0.94789 1.01594 0.92295 0.86227 0.80858 0.80768 0.78736 1.18341 1.19875 1.19532 1.19627 0.98107 0.90957 1.40031 0.89990 1.17606 0.91182 0.92496 0.89138 1.21117 1.03462 0.92783 1.05549 1.20438 0.96034 0.96800 0.98204 1.20315 1.01433 0.94509 1.07545 1.19361 0.96332 0.95411 1.01997 1.18856 0.83166 0.82205 0.79520 1.90722 1.66266 1.29750 1.54903 1.45954 1.30158 1.10731 1.52384 1.19511 0.90266 0.84941 0.96995 1.24940 0.97808 0.96732 0.87779 1.74935 1.13697 0.99442 1.21668 1.74698 1.16455 1.09362 1.04441 1.24612 1.00663 0.89089 1.01555 1.16460 0.79858 0.85398 0.79767 1.91009 1.46063 1.26225 1.71596 1.43405 1.39209 1.16622 1.28955 0.72925 1.21453 0.97180 0.84020 1.00098 1.21139 0.99967 1.03079 0.90339 1.43640 1.29570 1.12588 1.20947 1.21631 0.96371 0.96307 0.96697 0.90397 0.88532 0.88877 0.89471 0.76138 0.87259 0.89138 0.79089 0.79568 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.06 10.97 55.55 0.61 -19.45 16 2 C 0.07 1.78 5.14 -17.34 -0.09 1.69 16 3 Si 0.91 18.14 29.59 -169.99 -5.03 13.11 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -11.62 9.05 -37.73 -0.34 -11.97 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 9 C 0.10 2.50 5.57 -106.87 -0.59 1.91 16 10 C -0.21 -4.79 9.78 -38.81 -0.38 -5.17 16 11 C -0.10 -1.99 10.01 -39.72 -0.40 -2.38 16 12 C -0.22 -4.37 9.55 -38.92 -0.37 -4.75 16 13 C -0.13 -2.83 5.87 -105.04 -0.62 -3.45 16 14 C 0.57 11.34 7.77 -12.31 -0.10 11.24 16 15 O -0.54 -12.20 16.33 5.33 0.09 -12.11 16 16 N -0.74 -10.97 5.50 -62.42 -0.34 -11.32 16 17 C 0.21 2.56 6.20 -5.20 -0.03 2.53 16 18 C 0.19 2.36 7.48 -155.30 -1.16 1.20 16 19 N -0.25 -3.84 12.23 32.73 0.40 -3.44 16 20 N -0.20 -3.15 12.28 32.34 0.40 -2.76 16 21 C 0.10 1.29 8.12 -154.30 -1.25 0.03 16 22 C 0.60 6.22 7.97 -12.59 -0.10 6.12 16 23 O -0.48 -6.51 17.99 5.15 0.09 -6.42 16 24 N -0.64 -3.10 5.38 -13.15 -0.07 -3.17 16 25 H 0.43 0.80 8.92 -40.82 -0.36 0.44 16 26 C 0.09 0.26 11.09 -16.57 -0.18 0.08 16 27 C -0.03 -0.15 10.87 -16.51 -0.18 -0.33 16 28 N -0.38 -3.86 2.97 -58.39 -0.17 -4.04 16 29 C -0.09 -2.28 8.23 -38.44 -0.32 -2.60 16 30 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 31 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 32 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 33 H 0.09 1.47 6.38 -52.49 -0.33 1.14 16 34 H 0.40 5.62 6.48 -40.82 -0.26 5.35 16 35 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.19 -0.38 8.06 -52.49 -0.42 -0.80 16 38 H 0.19 0.62 8.06 -52.49 -0.42 0.19 16 39 H 0.13 3.68 5.77 -52.48 -0.30 3.38 16 LS Contribution 349.54 15.07 5.27 5.27 Total: -1.00 -34.58 349.54 -8.23 -42.81 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -3.35 Total: 7.37 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -6.11 Total: -5.85 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.82 Total: -44.18 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.18 Total: -18.53 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.58 -8.23 -42.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133665965.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.822 kcal (2) G-P(sol) polarization free energy of solvation -34.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds