Wall clock time and date at job start Tue Mar 31 2020 22:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86801 * 119.99883 * 2 1 4 4 H 1.48501 * 109.47167 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47019 * 299.99555 * 3 2 1 6 6 H 1.48501 * 109.46985 * 59.99863 * 3 2 1 7 7 C 1.38657 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99825 * 179.97438 * 7 2 1 9 9 O 1.34827 * 119.99767 * 0.02562 * 7 2 1 10 10 C 1.35758 * 116.99800 * 185.05411 * 9 7 2 11 11 C 1.38894 * 120.06951 * 354.48477 * 10 9 7 12 12 C 1.38079 * 119.93452 * 179.97438 * 11 10 9 13 13 C 1.38332 * 120.06482 * 359.75294 * 12 11 10 14 14 C 1.38281 * 120.13519 * 0.50558 * 13 12 11 15 15 C 1.50699 * 119.96001 * 179.76727 * 14 13 12 16 16 N 1.46500 * 109.47331 * 269.72209 * 15 14 13 17 17 C 1.34773 * 120.00262 * 180.02562 * 16 15 14 18 18 O 1.21624 * 119.99825 * 0.02562 * 17 16 15 19 19 C 1.47318 * 120.00270 * 179.97438 * 17 16 15 20 20 C 1.39007 * 120.90019 * 0.02562 * 19 17 16 21 21 C 1.39722 * 119.28606 * 180.29438 * 20 19 17 22 22 C 1.35258 * 121.08078 * 359.43136 * 21 20 19 23 23 N 1.35721 * 121.57297 * 0.57794 * 22 21 20 24 24 N 1.40205 * 134.09117 * 179.68315 * 23 22 21 25 25 N 1.29013 * 106.96114 * 180.02562 * 24 23 22 26 26 N 1.28587 * 110.79126 * 359.97438 * 25 24 23 27 27 C 1.32047 * 110.21016 * 0.02562 * 26 25 24 28 28 C 1.38118 * 120.06938 * 359.49075 * 14 13 12 29 29 H 0.96994 * 120.00372 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.03358 * 0.02562 * 11 10 9 31 31 H 1.07997 * 119.96719 * 180.02562 * 12 11 10 32 32 H 1.07993 * 119.93086 * 180.26984 * 13 12 11 33 33 H 1.09004 * 109.47128 * 149.71994 * 15 14 13 34 34 H 1.09000 * 109.47364 * 29.72274 * 15 14 13 35 35 H 0.97000 * 119.99743 * 0.02562 * 16 15 14 36 36 H 1.07993 * 120.35739 * 0.02562 * 20 19 17 37 37 H 1.07993 * 119.45721 * 179.69779 * 21 20 19 38 38 H 1.07998 * 119.21401 * 180.27198 * 22 21 20 39 39 H 1.08003 * 120.03245 * 180.23413 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8907 2.3964 1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0700 -3.5046 0.1076 11 6 3.4574 -3.4394 0.0956 12 6 4.2025 -4.5967 0.2052 13 6 3.5686 -5.8197 0.3321 14 6 2.1875 -5.8883 0.3391 15 6 1.5011 -7.2233 0.4723 16 7 1.2725 -7.7899 -0.8591 17 6 0.6673 -8.9873 -0.9872 18 8 0.3106 -9.5973 0.0028 19 6 0.4370 -9.5569 -2.3261 20 6 0.8366 -8.8757 -3.4701 21 6 0.5957 -9.4444 -4.7234 22 6 -0.0082 -10.6492 -4.8391 23 7 -0.4143 -11.3481 -3.7489 24 7 -1.0537 -12.5821 -3.5637 25 7 -1.1948 -12.7457 -2.2918 26 7 -0.7112 -11.7443 -1.6463 27 6 -0.2182 -10.8542 -2.4879 28 6 1.4367 -4.7342 0.2299 29 1 -0.4850 0.8400 0.0004 30 1 3.9529 -2.4844 0.0013 31 1 5.2813 -4.5466 0.1963 32 1 4.1535 -6.7230 0.4221 33 1 0.5455 -7.0914 0.9801 34 1 2.1301 -7.8991 1.0517 35 1 1.5567 -7.3033 -1.6486 36 1 1.3240 -7.9153 -3.3911 37 1 0.9006 -8.9154 -5.6141 38 1 -0.1755 -11.0626 -5.8227 39 1 0.3580 -4.7882 0.2392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136764409.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:43 Heat of formation + Delta-G solvation = 123.003003 kcal Electronic energy + Delta-G solvation = -26942.803034 eV Core-core repulsion = 22854.995635 eV Total energy + Delta-G solvation = -4087.807399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.70186 -40.14221 -39.20511 -38.66658 -36.90124 -34.79233 -34.31038 -32.43174 -32.39355 -31.49268 -30.45458 -29.21152 -26.59032 -25.59028 -25.05266 -24.70578 -23.44525 -21.81129 -21.14526 -20.94219 -19.20359 -18.28642 -17.99976 -17.55674 -17.23244 -16.99961 -16.21065 -15.81009 -15.52439 -15.12959 -14.64830 -14.53154 -14.38306 -14.15763 -13.70677 -13.67187 -13.48179 -13.29937 -12.84749 -12.83431 -12.76386 -12.49053 -12.33176 -11.79722 -11.68999 -11.47126 -11.29249 -11.03175 -10.90722 -10.78721 -10.68783 -10.52237 -10.23034 -9.48832 -9.26629 -9.02242 -8.96601 -8.35214 -7.41950 -6.56207 -4.15908 -0.49456 0.05633 1.20423 1.77910 1.78331 2.12403 2.17383 2.89467 3.04900 3.05532 3.06701 3.11915 3.13500 3.55749 3.84946 3.86270 4.01397 4.30022 4.44146 4.60078 4.81245 4.83592 4.97029 5.00102 5.05725 5.13875 5.18614 5.37382 5.45469 5.64679 5.75615 5.81900 5.83976 5.98713 6.16177 6.23946 6.45922 6.72345 6.91250 7.08710 7.18224 7.26449 7.30619 7.61763 7.87697 7.97811 8.03730 8.89236 9.56879 10.61419 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019372 B = 0.002093 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.026726 B =13375.254137 C =13834.750513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.175 6.175 10 C 0.150 3.850 11 C -0.224 4.224 12 C -0.076 4.076 13 C -0.195 4.195 14 C -0.075 4.075 15 C 0.169 3.831 16 N -0.712 5.712 17 C 0.557 3.443 18 O -0.502 6.502 19 C -0.096 4.096 20 C -0.018 4.018 21 C -0.142 4.142 22 C 0.127 3.873 23 N -0.310 5.310 24 N -0.108 5.108 25 N -0.009 5.009 26 N -0.289 5.289 27 C 0.273 3.727 28 C -0.171 4.171 29 H 0.271 0.729 30 H 0.128 0.872 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.401 0.599 36 H 0.166 0.834 37 H 0.177 0.823 38 H 0.185 0.815 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.166 -14.429 -11.973 19.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.079 6.079 10 C 0.096 3.904 11 C -0.244 4.244 12 C -0.094 4.094 13 C -0.214 4.214 14 C -0.076 4.076 15 C 0.047 3.953 16 N -0.364 5.364 17 C 0.341 3.659 18 O -0.377 6.377 19 C -0.105 4.105 20 C -0.043 4.043 21 C -0.165 4.165 22 C 0.000 4.000 23 N -0.090 5.090 24 N -0.091 5.091 25 N -0.002 5.002 26 N -0.146 5.146 27 C 0.014 3.986 28 C -0.190 4.190 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.237 0.763 36 H 0.184 0.816 37 H 0.194 0.806 38 H 0.202 0.798 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.691 -16.106 -10.792 19.736 hybrid contribution 1.066 1.904 -0.959 2.383 sum 4.757 -14.203 -11.751 19.038 Atomic orbital electron populations 1.70038 1.05985 1.27757 1.45626 1.25307 0.95852 0.98901 0.96407 0.85643 0.79123 0.80291 0.78354 1.19070 1.20094 1.20065 1.21372 0.91826 0.80707 1.53063 0.88941 1.83984 1.34313 1.11433 1.78128 1.19325 0.90258 0.88092 0.92752 1.21261 0.93848 0.99131 1.10130 1.20756 0.98613 0.92242 0.97812 1.20491 0.93296 0.97200 1.10440 1.19227 0.93483 0.92673 1.02220 1.20232 1.00604 0.91488 0.82951 1.45964 1.60464 1.19533 1.10458 1.17408 0.79398 0.81743 0.87309 1.90931 1.49084 1.59645 1.38043 1.20351 1.03321 0.90848 0.95962 1.22109 0.92409 0.99272 0.90556 1.21058 1.01203 0.94437 0.99828 1.21815 0.95158 0.91923 0.91104 1.49020 1.36951 1.15365 1.07661 1.82816 1.18782 0.94911 1.12545 1.78060 1.09242 1.15669 0.97224 1.75314 1.16670 0.98761 1.23858 1.23613 0.97511 0.96017 0.81439 1.20096 0.99482 0.89820 1.09649 0.91930 0.85441 0.87251 0.87413 0.90304 0.90400 0.76323 0.81631 0.80588 0.79802 0.86305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.11 13.67 55.48 0.76 -23.36 16 2 C 0.04 1.05 5.49 -17.51 -0.10 0.95 16 3 Si 0.94 19.45 29.55 -169.99 -5.02 14.43 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 6 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.39 -10.32 9.49 30.89 0.29 -10.02 16 8 H 0.09 2.23 5.20 -52.49 -0.27 1.96 16 9 O -0.18 -4.65 9.76 0.03 0.00 -4.65 16 10 C 0.15 3.25 6.65 -39.11 -0.26 2.99 16 11 C -0.22 -4.34 9.17 -39.40 -0.36 -4.70 16 12 C -0.08 -1.20 10.04 -39.61 -0.40 -1.60 16 13 C -0.19 -2.83 9.70 -39.53 -0.38 -3.21 16 14 C -0.08 -1.13 5.25 -104.65 -0.55 -1.68 16 15 C 0.17 2.19 5.80 -5.19 -0.03 2.16 16 16 N -0.71 -7.75 5.50 -62.60 -0.34 -8.10 16 17 C 0.56 7.05 7.77 -12.57 -0.10 6.96 16 18 O -0.50 -8.55 16.28 5.26 0.09 -8.47 16 19 C -0.10 -0.96 6.06 -102.71 -0.62 -1.58 16 20 C -0.02 -0.09 9.63 -38.74 -0.37 -0.46 16 21 C -0.14 -0.40 9.92 -40.09 -0.40 -0.80 16 22 C 0.13 0.60 11.15 -16.89 -0.19 0.41 16 23 N -0.31 -3.12 3.94 -10.99 -0.04 -3.17 16 24 N -0.11 -1.37 13.99 60.35 0.84 -0.52 16 25 N -0.01 -0.13 13.36 60.35 0.81 0.67 16 26 N -0.29 -4.59 11.75 32.20 0.38 -4.21 16 27 C 0.27 3.44 7.85 -154.52 -1.21 2.23 16 28 C -0.17 -3.14 9.65 -39.40 -0.38 -3.52 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.13 2.50 5.64 -52.48 -0.30 2.21 16 31 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 34 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 35 H 0.40 3.33 6.57 -40.82 -0.27 3.06 16 36 H 0.17 0.39 6.49 -52.49 -0.34 0.05 16 37 H 0.18 -0.20 8.06 -52.49 -0.42 -0.63 16 38 H 0.18 0.19 8.06 -52.49 -0.42 -0.23 16 39 H 0.12 2.18 8.06 -52.48 -0.42 1.75 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -35.70 351.39 -5.56 -41.27 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -3.27 Total: 2.69 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -5.06 Total: -11.88 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 2.40 Total: -38.68 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.70 -5.56 -41.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136764409.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.270 kcal (2) G-P(sol) polarization free energy of solvation -35.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds