Wall clock time and date at job start Tue Mar 31 2020 22:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86801 * 119.99883 * 2 1 4 4 H 1.48501 * 109.47167 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47019 * 299.99555 * 3 2 1 6 6 H 1.48501 * 109.46985 * 59.99863 * 3 2 1 7 7 C 1.38657 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99825 * 179.97438 * 7 2 1 9 9 O 1.34827 * 119.99767 * 0.02562 * 7 2 1 10 10 C 1.35758 * 116.99800 * 185.05411 * 9 7 2 11 11 C 1.38894 * 120.06951 * 354.48477 * 10 9 7 12 12 C 1.38079 * 119.93452 * 179.97438 * 11 10 9 13 13 C 1.38332 * 120.06482 * 359.75294 * 12 11 10 14 14 C 1.38281 * 120.13519 * 0.50558 * 13 12 11 15 15 C 1.50699 * 119.96001 * 179.76727 * 14 13 12 16 16 N 1.46500 * 109.47331 * 269.72209 * 15 14 13 17 17 C 1.34773 * 120.00262 * 180.02562 * 16 15 14 18 18 O 1.21624 * 119.99825 * 0.02562 * 17 16 15 19 19 C 1.47318 * 120.00270 * 179.97438 * 17 16 15 20 20 C 1.39007 * 120.90019 * 0.02562 * 19 17 16 21 21 C 1.39722 * 119.28606 * 180.29438 * 20 19 17 22 22 C 1.35258 * 121.08078 * 359.43136 * 21 20 19 23 23 N 1.35721 * 121.57297 * 0.57794 * 22 21 20 24 24 N 1.40205 * 134.09117 * 179.68315 * 23 22 21 25 25 N 1.29013 * 106.96114 * 180.02562 * 24 23 22 26 26 N 1.28587 * 110.79126 * 359.97438 * 25 24 23 27 27 C 1.32047 * 110.21016 * 0.02562 * 26 25 24 28 28 C 1.38118 * 120.06938 * 359.49075 * 14 13 12 29 29 H 0.96994 * 120.00372 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.03358 * 0.02562 * 11 10 9 31 31 H 1.07997 * 119.96719 * 180.02562 * 12 11 10 32 32 H 1.07993 * 119.93086 * 180.26984 * 13 12 11 33 33 H 1.09004 * 109.47128 * 149.71994 * 15 14 13 34 34 H 1.09000 * 109.47364 * 29.72274 * 15 14 13 35 35 H 0.97000 * 119.99743 * 0.02562 * 16 15 14 36 36 H 1.07993 * 120.35739 * 0.02562 * 20 19 17 37 37 H 1.07993 * 119.45721 * 179.69779 * 21 20 19 38 38 H 1.07998 * 119.21401 * 180.27198 * 22 21 20 39 39 H 1.08003 * 120.03245 * 180.23413 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8907 2.3964 1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0700 -3.5046 0.1076 11 6 3.4574 -3.4394 0.0956 12 6 4.2025 -4.5967 0.2052 13 6 3.5686 -5.8197 0.3321 14 6 2.1875 -5.8883 0.3391 15 6 1.5011 -7.2233 0.4723 16 7 1.2725 -7.7899 -0.8591 17 6 0.6673 -8.9873 -0.9872 18 8 0.3106 -9.5973 0.0028 19 6 0.4370 -9.5569 -2.3261 20 6 0.8366 -8.8757 -3.4701 21 6 0.5957 -9.4444 -4.7234 22 6 -0.0082 -10.6492 -4.8391 23 7 -0.4143 -11.3481 -3.7489 24 7 -1.0537 -12.5821 -3.5637 25 7 -1.1948 -12.7457 -2.2918 26 7 -0.7112 -11.7443 -1.6463 27 6 -0.2182 -10.8542 -2.4879 28 6 1.4367 -4.7342 0.2299 29 1 -0.4850 0.8400 0.0004 30 1 3.9529 -2.4844 0.0013 31 1 5.2813 -4.5466 0.1963 32 1 4.1535 -6.7230 0.4221 33 1 0.5455 -7.0914 0.9801 34 1 2.1301 -7.8991 1.0517 35 1 1.5567 -7.3033 -1.6486 36 1 1.3240 -7.9153 -3.3911 37 1 0.9006 -8.9154 -5.6141 38 1 -0.1755 -11.0626 -5.8227 39 1 0.3580 -4.7882 0.2392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136764409.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:42 Heat of formation + Delta-G solvation = 96.271979 kcal Electronic energy + Delta-G solvation = -26943.962178 eV Core-core repulsion = 22854.995635 eV Total energy + Delta-G solvation = -4088.966543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.51155 -41.16653 -40.61496 -39.43593 -38.42045 -35.90775 -35.10249 -34.25575 -33.15724 -32.51032 -31.45999 -30.66925 -27.75208 -27.11811 -26.08244 -25.38806 -24.35129 -23.21828 -22.42732 -21.98624 -20.06293 -19.58138 -18.98806 -18.64696 -18.32002 -18.05937 -16.91520 -16.77392 -16.59029 -16.55531 -16.06919 -15.97284 -15.54450 -15.33675 -14.95587 -14.80631 -14.34847 -14.20384 -14.01858 -13.85497 -13.70846 -13.68903 -13.35472 -13.27912 -13.00816 -12.56850 -12.54269 -12.33702 -12.23382 -12.18449 -12.06663 -11.32662 -11.28764 -11.15536 -10.79404 -10.25829 -9.74013 -9.72486 -8.99512 -8.44669 -6.12590 -1.08919 -0.61213 0.37942 0.58852 0.74805 0.94159 1.38344 1.43419 1.45553 1.55753 1.98402 2.19188 2.25587 2.46331 2.79390 2.90947 3.17935 3.37887 3.43204 3.57306 3.71544 3.85841 3.99937 4.13827 4.18506 4.33109 4.35203 4.45164 4.55230 4.57528 4.72689 4.73461 4.78371 4.96099 5.05427 5.15393 5.24557 5.30211 5.34421 5.66547 5.74765 5.76220 6.04739 6.20250 6.42025 7.00899 7.08226 7.15093 7.81705 8.78521 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019372 B = 0.002093 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.026726 B =13375.254137 C =13834.750513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.016 2.984 4 H -0.249 1.249 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.408 4.408 8 H 0.105 0.895 9 O -0.232 6.232 10 C 0.112 3.888 11 C -0.232 4.232 12 C -0.069 4.069 13 C -0.165 4.165 14 C -0.058 4.058 15 C 0.175 3.825 16 N -0.698 5.698 17 C 0.560 3.440 18 O -0.558 6.558 19 C -0.136 4.136 20 C 0.022 3.978 21 C -0.115 4.115 22 C 0.122 3.878 23 N -0.306 5.306 24 N -0.120 5.120 25 N -0.039 5.039 26 N -0.345 5.345 27 C 0.254 3.746 28 C -0.178 4.178 29 H 0.271 0.729 30 H 0.119 0.881 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.416 0.584 36 H 0.202 0.798 37 H 0.236 0.764 38 H 0.227 0.773 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.792 -14.520 -14.931 22.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.836 3.164 4 H -0.172 1.172 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.485 4.485 8 H 0.122 0.878 9 O -0.139 6.139 10 C 0.062 3.938 11 C -0.251 4.251 12 C -0.087 4.087 13 C -0.184 4.184 14 C -0.058 4.058 15 C 0.052 3.948 16 N -0.351 5.351 17 C 0.347 3.653 18 O -0.437 6.437 19 C -0.146 4.146 20 C -0.003 4.003 21 C -0.138 4.138 22 C -0.004 4.004 23 N -0.087 5.087 24 N -0.104 5.104 25 N -0.032 5.032 26 N -0.203 5.203 27 C -0.003 4.003 28 C -0.198 4.198 29 H 0.080 0.920 30 H 0.137 0.863 31 H 0.166 0.834 32 H 0.167 0.833 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.255 0.745 36 H 0.219 0.781 37 H 0.252 0.748 38 H 0.244 0.756 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.373 -16.231 -13.791 22.539 hybrid contribution 0.130 1.682 -0.215 1.700 sum 7.503 -14.549 -14.006 21.544 Atomic orbital electron populations 1.70184 1.08028 1.28640 1.49112 1.26540 0.96771 1.02714 0.96071 0.84559 0.78432 0.75094 0.78354 1.17198 1.19433 1.19905 1.21841 0.92528 0.81326 1.52765 0.87817 1.83952 1.35953 1.12567 1.81440 1.19852 0.91608 0.87822 0.94508 1.21378 0.93002 1.00404 1.10364 1.21154 1.00399 0.91104 0.96026 1.21002 0.92967 0.98298 1.06089 1.19348 0.93891 0.92197 1.00379 1.20078 1.00039 0.90514 0.84197 1.45705 1.60095 1.19130 1.10211 1.17766 0.78192 0.81406 0.87955 1.90905 1.51445 1.61154 1.40161 1.20129 1.07261 0.91140 0.96068 1.22713 0.88562 0.99252 0.89752 1.21817 0.98252 0.93105 1.00596 1.22976 0.93859 0.92222 0.91302 1.49143 1.36547 1.14661 1.08305 1.82611 1.19563 0.96426 1.11778 1.77976 1.10572 1.16502 0.98108 1.75136 1.18917 1.00157 1.26095 1.23801 0.97907 0.96554 0.81989 1.20216 0.99451 0.90084 1.10061 0.91970 0.86316 0.83438 0.83300 0.91714 0.89230 0.74541 0.78145 0.74788 0.75634 0.87391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.50 13.67 21.61 0.30 -54.21 16 2 C -0.02 -1.27 5.49 84.83 0.47 -0.81 16 3 Si 1.02 40.64 29.55 68.60 2.03 42.66 16 4 H -0.25 -9.04 7.11 99.48 0.71 -8.33 16 5 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 7 C -0.41 -22.25 9.49 67.92 0.64 -21.60 16 8 H 0.10 5.12 5.20 -2.91 -0.02 5.10 16 9 O -0.23 -12.99 9.76 -22.79 -0.22 -13.21 16 10 C 0.11 4.97 6.65 22.58 0.15 5.12 16 11 C -0.23 -8.70 9.17 22.39 0.21 -8.49 16 12 C -0.07 -1.89 10.04 22.25 0.22 -1.67 16 13 C -0.16 -3.97 9.70 22.30 0.22 -3.75 16 14 C -0.06 -1.57 5.25 -19.88 -0.10 -1.68 16 15 C 0.17 4.18 5.80 85.63 0.50 4.68 16 16 N -0.70 -13.56 5.50 -470.21 -2.59 -16.15 16 17 C 0.56 13.77 7.77 86.63 0.67 14.44 16 18 O -0.56 -19.70 16.28 -4.11 -0.07 -19.77 16 19 C -0.14 -2.49 6.06 -18.63 -0.11 -2.60 16 20 C 0.02 0.12 9.63 22.81 0.22 0.34 16 21 C -0.12 0.10 9.92 21.94 0.22 0.32 16 22 C 0.12 0.60 11.15 83.40 0.93 1.53 16 23 N -0.31 -5.75 3.94 -188.68 -0.74 -6.50 16 24 N -0.12 -3.10 13.99 37.02 0.52 -2.59 16 25 N -0.04 -1.25 13.36 37.02 0.49 -0.75 16 26 N -0.34 -11.67 11.75 -52.05 -0.61 -12.28 16 27 C 0.25 6.42 7.85 135.75 1.07 7.49 16 28 C -0.18 -6.57 9.65 22.39 0.22 -6.35 16 29 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 30 H 0.12 4.60 5.64 -2.91 -0.02 4.59 16 31 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 32 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 33 H 0.06 1.78 8.08 -2.39 -0.02 1.76 16 34 H 0.09 2.01 8.08 -2.39 -0.02 2.00 16 35 H 0.42 5.27 6.57 -92.71 -0.61 4.66 16 36 H 0.20 -0.38 6.49 -2.91 -0.02 -0.40 16 37 H 0.24 -2.73 8.06 -2.91 -0.02 -2.75 16 38 H 0.23 -0.86 8.06 -2.91 -0.02 -0.88 16 39 H 0.11 4.14 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -91.28 351.39 5.14 -86.13 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.53 Total: 9.71 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 5.51 Total: -13.05 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -2.63 Total: -92.48 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -0.29 Total: -32.97 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.66 kcal Total: -91.28 5.14 -86.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136764409.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.404 kcal (2) G-P(sol) polarization free energy of solvation -91.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds