Wall clock time and date at job start Tue Mar 31 2020 22:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86802 * 119.99789 * 2 1 4 4 H 1.48504 * 109.46761 * 269.99939 * 3 2 1 5 5 H 1.48497 * 109.47191 * 30.00061 * 3 2 1 6 6 H 1.48498 * 109.47158 * 150.00483 * 3 2 1 7 7 C 1.38798 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99903 * 179.97438 * 7 2 1 9 9 S 1.76190 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.81004 * 100.00183 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47006 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00481 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99747 * 180.02562 * 11 10 9 14 14 C 1.48144 * 127.83890 * 179.97438 * 13 11 10 15 15 C 1.54386 * 104.61789 * 219.60128 * 14 13 11 16 16 H 1.09002 * 110.42783 * 95.05356 * 15 14 13 17 17 C 1.50700 * 110.34128 * 217.25996 * 15 14 13 18 18 C 1.38235 * 120.00273 * 235.53580 * 17 15 14 19 19 C 1.38234 * 120.00220 * 179.97438 * 18 17 15 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38238 * 119.99747 * 359.50225 * 20 19 18 22 22 C 1.38234 * 120.00083 * 0.44989 * 21 20 19 23 23 C 1.54280 * 104.95846 * 336.13567 * 15 14 13 24 24 F 1.39905 * 110.34017 * 241.12285 * 23 15 14 25 25 C 1.53000 * 110.34152 * 118.87263 * 23 15 14 26 26 O 1.42902 * 109.46966 * 179.97438 * 25 23 15 27 27 C 1.48147 * 127.83568 * 0.02562 * 13 11 10 28 28 H 0.96997 * 120.00149 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46498 * 60.00087 * 10 9 7 30 30 H 1.08999 * 109.47130 * 300.00246 * 10 9 7 31 31 H 1.09001 * 110.40794 * 100.81435 * 14 13 11 32 32 H 1.09004 * 110.40812 * 338.39209 * 14 13 11 33 33 H 1.07999 * 119.99770 * 359.97438 * 18 17 15 34 34 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 35 35 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 36 36 H 1.07999 * 119.99927 * 180.28388 * 21 20 19 37 37 H 1.08002 * 120.00281 * 179.83134 * 22 21 20 38 38 H 1.09000 * 109.47307 * 299.99187 * 25 23 15 39 39 H 1.09000 * 109.47627 * 59.99782 * 25 23 15 40 40 H 0.96705 * 113.99822 * 180.02562 * 26 25 23 41 41 H 1.08997 * 110.40815 * 21.61904 * 27 13 11 42 42 H 1.08996 * 110.40596 * 259.18229 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4403 0.6999 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0019 10 6 2.5159 -3.8914 0.0013 11 6 1.9874 -5.3027 0.0018 12 8 0.7911 -5.5023 0.0028 13 7 2.8442 -6.3431 0.0020 14 6 2.5188 -7.7884 0.0029 15 6 3.5566 -8.4208 0.9551 16 1 3.1437 -8.5148 1.9595 17 6 3.9879 -9.7692 0.4387 18 6 3.8709 -10.8873 1.2431 19 6 4.2661 -12.1242 0.7693 20 6 4.7839 -12.2423 -0.5070 21 6 4.8969 -11.1249 -1.3131 22 6 4.5008 -9.8881 -0.8395 23 6 4.7474 -7.4400 0.9543 24 9 5.8989 -8.0735 0.4746 25 6 4.9875 -6.8937 2.3632 26 8 6.0934 -5.9890 2.3413 27 6 4.3251 -6.3008 0.0024 28 1 -0.4850 0.8400 0.0004 29 1 3.1252 -3.7309 0.8908 30 1 3.1239 -3.7317 -0.8891 31 1 2.6219 -8.2018 -1.0004 32 1 1.5089 -7.9503 0.3796 33 1 3.4706 -10.7943 2.2419 34 1 4.1742 -12.9978 1.3977 35 1 5.0968 -13.2080 -0.8757 36 1 5.2972 -11.2179 -2.3118 37 1 4.5916 -9.0147 -1.4683 38 1 4.0956 -6.3696 2.7065 39 1 5.2071 -7.7191 3.0404 40 1 6.3033 -5.6035 3.2030 41 1 4.6778 -5.3406 0.3789 42 1 4.7107 -6.4816 -1.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141554412.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:02 Heat of formation + Delta-G solvation = -95.453833 kcal Electronic energy + Delta-G solvation = -27036.527829 eV Core-core repulsion = 23022.478669 eV Total energy + Delta-G solvation = -4014.049160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.91575 -40.25071 -39.10945 -37.58284 -36.44294 -33.12567 -32.45027 -31.17033 -30.71525 -29.83468 -27.96033 -26.27191 -25.50170 -23.96919 -22.80529 -21.82606 -20.26653 -19.60904 -17.90064 -17.56055 -17.43077 -16.81403 -16.44753 -15.90658 -15.60149 -15.31534 -15.17192 -14.87484 -14.81832 -14.58953 -14.14354 -13.93314 -13.74923 -13.54439 -13.45531 -13.05341 -12.93792 -12.69938 -12.50564 -12.36221 -12.05088 -11.84644 -11.39562 -11.28188 -11.07932 -11.05138 -11.03075 -10.95036 -10.77703 -10.40673 -9.84561 -9.54752 -9.15122 -9.08765 -9.00029 -8.74703 -8.27655 -6.53825 -6.23887 -3.95063 1.04688 1.17044 2.71701 2.91401 3.21359 3.23144 3.28867 3.39664 3.51793 3.62642 3.92632 4.13874 4.19099 4.26076 4.41824 4.58376 4.63318 4.74319 4.81048 4.87077 4.92199 4.97952 5.07522 5.11427 5.22504 5.25810 5.34601 5.41305 5.50947 5.60548 5.64131 5.70563 5.75457 5.80385 5.84153 6.08989 6.13774 6.22899 6.26831 6.32239 6.73419 7.26099 7.52585 7.58086 8.33338 8.41962 9.21570 10.83535 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021755 B = 0.002611 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.745450 B =10722.663232 C =11379.656365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.148 4.148 11 C 0.558 3.442 12 O -0.509 6.509 13 N -0.629 5.629 14 C 0.114 3.886 15 C -0.083 4.083 16 H 0.103 0.897 17 C -0.074 4.074 18 C -0.109 4.109 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.093 4.093 23 C 0.120 3.880 24 F -0.184 7.184 25 C 0.064 3.936 26 O -0.563 6.563 27 C 0.088 3.912 28 H 0.269 0.731 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.386 0.614 41 H 0.104 0.896 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.626 -22.906 3.448 26.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.298 4.298 11 C 0.347 3.653 12 O -0.382 6.382 13 N -0.367 5.367 14 C -0.009 4.009 15 C -0.102 4.102 16 H 0.122 0.878 17 C -0.075 4.075 18 C -0.127 4.127 19 C -0.140 4.140 20 C -0.137 4.137 21 C -0.138 4.138 22 C -0.111 4.111 23 C 0.100 3.900 24 F -0.164 7.164 25 C -0.015 4.015 26 O -0.369 6.369 27 C -0.037 4.037 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.235 0.765 41 H 0.122 0.878 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.594 -23.139 2.802 25.603 hybrid contribution 2.164 1.283 0.587 2.583 sum 12.758 -21.856 3.388 25.533 Atomic orbital electron populations 1.70016 1.05952 1.27499 1.46822 1.24995 0.95035 0.99043 0.94494 0.86161 0.79410 0.81503 0.78400 1.20235 1.20746 1.19660 1.22850 0.94917 0.91504 1.59022 0.90865 1.85395 1.04736 0.96384 1.96736 1.23527 1.06645 0.94620 1.05048 1.20048 0.85441 0.85143 0.74681 1.90727 1.14679 1.84900 1.47921 1.48951 1.06094 1.05675 1.75983 1.22378 0.99154 0.80376 0.99035 1.21684 0.95043 0.91791 1.01720 0.87835 1.19360 1.00113 0.93302 0.94685 1.21013 0.99985 0.92233 0.99434 1.21096 0.99465 0.97315 0.96170 1.21168 0.99478 0.98625 0.94437 1.21134 1.00120 0.92600 0.99914 1.21017 0.97334 0.97686 0.95099 1.21711 0.82555 0.91772 0.93965 1.92904 1.51176 1.82984 1.89343 1.22650 0.90672 0.93326 0.94825 1.86477 1.50850 1.62716 1.36830 1.22843 0.81204 0.99958 0.99676 0.92156 0.89134 0.89097 0.90408 0.88773 0.86051 0.86067 0.86184 0.85979 0.86019 0.91213 0.92233 0.76549 0.87760 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.98 13.22 55.49 0.73 -25.25 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.53 -15.10 9.50 30.94 0.29 -14.81 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -3.00 5.14 36.00 0.18 -2.81 16 11 C 0.56 10.50 7.93 -10.98 -0.09 10.41 16 12 O -0.51 -11.47 16.13 5.55 0.09 -11.38 16 13 N -0.63 -8.89 3.32 -169.33 -0.56 -9.45 16 14 C 0.11 1.32 6.49 -2.41 -0.02 1.31 16 15 C -0.08 -0.79 2.94 -90.38 -0.27 -1.06 16 16 H 0.10 0.85 7.50 -51.93 -0.39 0.47 16 17 C -0.07 -0.70 4.35 -104.62 -0.46 -1.16 16 18 C -0.11 -0.92 9.68 -39.58 -0.38 -1.30 16 19 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 20 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 21 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 22 C -0.09 -0.90 7.24 -39.58 -0.29 -1.18 16 23 C 0.12 1.26 1.36 -89.25 -0.12 1.14 16 24 F -0.18 -2.21 14.30 2.25 0.03 -2.18 16 25 C 0.06 0.60 6.00 37.16 0.22 0.82 16 26 O -0.56 -5.61 13.01 -35.23 -0.46 -6.07 16 27 C 0.09 1.04 6.18 -2.43 -0.02 1.03 16 28 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.09 1.70 7.95 -51.91 -0.41 1.29 16 30 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 31 H 0.08 0.85 6.78 -51.93 -0.35 0.50 16 32 H 0.09 1.16 7.88 -51.93 -0.41 0.75 16 33 H 0.12 0.81 7.97 -52.49 -0.42 0.39 16 34 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 35 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.12 1.15 7.55 -52.49 -0.40 0.75 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.39 2.16 9.12 45.56 0.42 2.57 16 41 H 0.10 1.29 6.59 -51.93 -0.34 0.95 16 42 H 0.09 0.94 8.12 -51.93 -0.42 0.52 16 LS Contribution 368.03 15.07 5.55 5.55 Total: -1.00 -35.42 368.03 -8.88 -44.30 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -4.81 Total: 1.79 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -2.22 Total: -9.76 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.17 Total: -34.70 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.37 Total: -17.46 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.03 Total: -2.18 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.42 -8.88 -44.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141554412.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.154 kcal (2) G-P(sol) polarization free energy of solvation -35.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds