Wall clock time and date at job start Tue Mar 31 2020 22:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86802 * 119.99789 * 2 1 4 4 H 1.48504 * 109.46761 * 269.99939 * 3 2 1 5 5 H 1.48497 * 109.47191 * 30.00061 * 3 2 1 6 6 H 1.48498 * 109.47158 * 150.00483 * 3 2 1 7 7 C 1.38798 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99903 * 179.97438 * 7 2 1 9 9 S 1.76190 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.81004 * 100.00183 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47006 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00481 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99747 * 180.02562 * 11 10 9 14 14 C 1.48144 * 127.83890 * 179.97438 * 13 11 10 15 15 C 1.54386 * 104.61789 * 219.60128 * 14 13 11 16 16 H 1.09002 * 110.42783 * 95.05356 * 15 14 13 17 17 C 1.50700 * 110.34128 * 217.25996 * 15 14 13 18 18 C 1.38235 * 120.00273 * 235.53580 * 17 15 14 19 19 C 1.38234 * 120.00220 * 179.97438 * 18 17 15 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38238 * 119.99747 * 359.50225 * 20 19 18 22 22 C 1.38234 * 120.00083 * 0.44989 * 21 20 19 23 23 C 1.54280 * 104.95846 * 336.13567 * 15 14 13 24 24 F 1.39905 * 110.34017 * 241.12285 * 23 15 14 25 25 C 1.53000 * 110.34152 * 118.87263 * 23 15 14 26 26 O 1.42902 * 109.46966 * 179.97438 * 25 23 15 27 27 C 1.48147 * 127.83568 * 0.02562 * 13 11 10 28 28 H 0.96997 * 120.00149 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46498 * 60.00087 * 10 9 7 30 30 H 1.08999 * 109.47130 * 300.00246 * 10 9 7 31 31 H 1.09001 * 110.40794 * 100.81435 * 14 13 11 32 32 H 1.09004 * 110.40812 * 338.39209 * 14 13 11 33 33 H 1.07999 * 119.99770 * 359.97438 * 18 17 15 34 34 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 35 35 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 36 36 H 1.07999 * 119.99927 * 180.28388 * 21 20 19 37 37 H 1.08002 * 120.00281 * 179.83134 * 22 21 20 38 38 H 1.09000 * 109.47307 * 299.99187 * 25 23 15 39 39 H 1.09000 * 109.47627 * 59.99782 * 25 23 15 40 40 H 0.96705 * 113.99822 * 180.02562 * 26 25 23 41 41 H 1.08997 * 110.40815 * 21.61904 * 27 13 11 42 42 H 1.08996 * 110.40596 * 259.18229 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4403 0.6999 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0019 10 6 2.5159 -3.8914 0.0013 11 6 1.9874 -5.3027 0.0018 12 8 0.7911 -5.5023 0.0028 13 7 2.8442 -6.3431 0.0020 14 6 2.5188 -7.7884 0.0029 15 6 3.5566 -8.4208 0.9551 16 1 3.1437 -8.5148 1.9595 17 6 3.9879 -9.7692 0.4387 18 6 3.8709 -10.8873 1.2431 19 6 4.2661 -12.1242 0.7693 20 6 4.7839 -12.2423 -0.5070 21 6 4.8969 -11.1249 -1.3131 22 6 4.5008 -9.8881 -0.8395 23 6 4.7474 -7.4400 0.9543 24 9 5.8989 -8.0735 0.4746 25 6 4.9875 -6.8937 2.3632 26 8 6.0934 -5.9890 2.3413 27 6 4.3251 -6.3008 0.0024 28 1 -0.4850 0.8400 0.0004 29 1 3.1252 -3.7309 0.8908 30 1 3.1239 -3.7317 -0.8891 31 1 2.6219 -8.2018 -1.0004 32 1 1.5089 -7.9503 0.3796 33 1 3.4706 -10.7943 2.2419 34 1 4.1742 -12.9978 1.3977 35 1 5.0968 -13.2080 -0.8757 36 1 5.2972 -11.2179 -2.3118 37 1 4.5916 -9.0147 -1.4683 38 1 4.0956 -6.3696 2.7065 39 1 5.2071 -7.7191 3.0404 40 1 6.3033 -5.6035 3.2030 41 1 4.6778 -5.3406 0.3789 42 1 4.7107 -6.4816 -1.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141554412.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:01 Heat of formation + Delta-G solvation = -119.153070 kcal Electronic energy + Delta-G solvation = -27037.555505 eV Core-core repulsion = 23022.478669 eV Total energy + Delta-G solvation = -4015.076836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.80274 -41.29310 -40.05299 -38.61096 -37.31988 -34.59643 -34.10305 -31.79222 -31.62198 -31.15123 -28.98143 -27.70268 -27.17763 -24.88703 -23.45622 -22.57310 -21.13154 -20.92161 -19.67388 -18.54098 -18.22108 -18.05915 -17.26510 -16.89824 -16.83092 -16.75381 -16.41552 -16.02503 -15.93935 -15.71287 -15.36651 -14.89331 -14.82315 -14.63939 -14.38528 -14.16657 -13.90563 -13.81033 -13.62896 -13.43958 -13.17882 -13.10039 -12.90973 -12.85896 -12.62310 -12.13874 -11.95286 -11.81244 -11.75585 -11.70514 -11.15237 -11.14057 -11.06138 -10.31323 -10.01459 -9.75562 -9.62505 -8.69341 -8.35729 -6.14302 0.40238 0.54713 1.17279 1.41635 1.42038 1.44075 1.54490 1.89206 2.25738 2.70454 2.89955 2.98606 3.08855 3.13711 3.36307 3.41586 3.70380 3.74182 3.89869 3.90592 4.09299 4.17460 4.18320 4.21302 4.32281 4.33608 4.37290 4.45779 4.56147 4.59716 4.65364 4.68164 4.81666 4.83688 5.04667 5.16442 5.18753 5.41237 5.59597 5.65968 5.66909 6.13233 6.18650 6.21322 6.76500 6.97065 7.05729 8.73458 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021755 B = 0.002611 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.745450 B =10722.663232 C =11379.656365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.143 6.143 10 C -0.123 4.123 11 C 0.561 3.439 12 O -0.555 6.555 13 N -0.618 5.618 14 C 0.112 3.888 15 C -0.070 4.070 16 H 0.120 0.880 17 C -0.087 4.087 18 C -0.115 4.115 19 C -0.128 4.128 20 C -0.123 4.123 21 C -0.131 4.131 22 C -0.110 4.110 23 C 0.121 3.879 24 F -0.191 7.191 25 C 0.064 3.936 26 O -0.582 6.582 27 C 0.083 3.917 28 H 0.272 0.728 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.135 0.865 37 H 0.116 0.884 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.404 0.596 41 H 0.101 0.899 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.939 -24.005 4.151 28.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.182 1.182 7 C -0.693 4.693 8 H 0.100 0.900 9 S 0.084 5.916 10 C -0.274 4.274 11 C 0.349 3.651 12 O -0.432 6.432 13 N -0.353 5.353 14 C -0.011 4.011 15 C -0.089 4.089 16 H 0.138 0.862 17 C -0.087 4.087 18 C -0.133 4.133 19 C -0.145 4.145 20 C -0.141 4.141 21 C -0.149 4.149 22 C -0.128 4.128 23 C 0.102 3.898 24 F -0.171 7.171 25 C -0.014 4.014 26 O -0.391 6.391 27 C -0.040 4.040 28 H 0.081 0.919 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.152 0.848 37 H 0.134 0.866 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.255 0.745 41 H 0.120 0.880 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.961 -24.278 3.517 27.745 hybrid contribution 1.534 1.445 0.343 2.135 sum 14.495 -22.832 3.860 27.319 Atomic orbital electron populations 1.70174 1.07922 1.28662 1.47922 1.26113 0.95968 1.03253 0.93696 0.84964 0.78238 0.76054 0.78799 1.19384 1.20197 1.18183 1.23172 0.95299 0.91890 1.58979 0.90007 1.85540 1.09952 0.99043 1.97034 1.23322 1.03710 0.93875 1.06469 1.19667 0.85143 0.85458 0.74792 1.90710 1.16533 1.85456 1.50526 1.48721 1.06854 1.05919 1.73807 1.22561 0.99640 0.78600 1.00254 1.21592 0.93808 0.91631 1.01894 0.86157 1.19381 1.01001 0.93377 0.94978 1.21282 0.99745 0.92135 1.00161 1.21431 0.98741 0.97903 0.96460 1.21494 0.98852 0.99316 0.94464 1.21377 1.00176 0.92568 1.00783 1.21110 0.98190 0.98077 0.95416 1.21722 0.82538 0.91320 0.94231 1.92893 1.51610 1.83053 1.89536 1.22668 0.90673 0.93950 0.94115 1.86428 1.50970 1.63035 1.38678 1.23025 0.79349 1.00737 1.00912 0.91936 0.87373 0.87758 0.89642 0.89576 0.84330 0.83892 0.84139 0.84754 0.86563 0.91201 0.90219 0.74494 0.88034 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.61 13.22 21.65 0.29 -55.33 16 2 C 0.01 0.83 5.49 84.86 0.47 1.29 16 3 Si 1.00 43.41 29.55 68.60 2.03 45.44 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 7 C -0.55 -31.04 9.50 67.95 0.65 -30.40 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.14 -7.91 20.57 -56.49 -1.16 -9.07 16 10 C -0.12 -4.97 5.14 71.24 0.37 -4.60 16 11 C 0.56 21.23 7.93 87.66 0.70 21.93 16 12 O -0.55 -25.75 16.13 -3.04 -0.05 -25.80 16 13 N -0.62 -17.03 3.32 -808.04 -2.68 -19.71 16 14 C 0.11 2.51 6.49 86.53 0.56 3.07 16 15 C -0.07 -1.22 2.94 -10.64 -0.03 -1.25 16 16 H 0.12 1.70 7.50 -2.39 -0.02 1.69 16 17 C -0.09 -1.50 4.35 -19.87 -0.09 -1.59 16 18 C -0.12 -1.69 9.68 22.27 0.22 -1.47 16 19 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 20 C -0.12 -1.67 10.05 22.27 0.22 -1.44 16 21 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 22 C -0.11 -1.98 7.24 22.27 0.16 -1.82 16 23 C 0.12 2.34 1.36 -9.90 -0.01 2.33 16 24 F -0.19 -4.26 14.30 44.97 0.64 -3.61 16 25 C 0.06 1.06 6.00 71.98 0.43 1.49 16 26 O -0.58 -10.42 13.01 -148.98 -1.94 -12.35 16 27 C 0.08 1.87 6.18 86.52 0.53 2.40 16 28 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 29 H 0.11 3.97 7.95 -2.39 -0.02 3.96 16 30 H 0.10 3.92 8.14 -2.40 -0.02 3.90 16 31 H 0.09 1.82 6.78 -2.39 -0.02 1.80 16 32 H 0.09 2.11 7.88 -2.38 -0.02 2.10 16 33 H 0.14 1.46 7.97 -2.91 -0.02 1.43 16 34 H 0.14 1.19 8.06 -2.91 -0.02 1.16 16 35 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.13 1.64 8.06 -2.91 -0.02 1.62 16 37 H 0.12 2.12 7.55 -2.91 -0.02 2.10 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.40 3.67 9.12 -74.05 -0.68 3.00 16 41 H 0.10 2.37 6.59 -2.39 -0.02 2.35 16 42 H 0.10 1.97 8.12 -2.39 -0.02 1.95 16 Total: -1.00 -77.96 368.03 2.12 -75.84 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.37 Total: 17.95 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: 4.62 Total: -13.34 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: -2.39 Total: -75.04 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -1.99 Total: -38.16 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.64 Total: -3.61 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -7.91 SS G_CDS: -1.16 Total: -9.07 kcal Total: -77.96 2.12 -75.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141554412.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.311 kcal (2) G-P(sol) polarization free energy of solvation -77.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds