Wall clock time and date at job start Tue Mar 31 2020 22:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 119.99718 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99677 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99857 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.38796 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00235 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00161 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00265 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47338 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00056 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00396 * 179.97438 * 11 10 9 14 14 C 1.47018 * 125.65372 * 179.97438 * 13 11 10 15 15 C 1.54321 * 107.27275 * 181.02018 * 14 13 11 16 16 H 1.08998 * 110.71954 * 263.82244 * 15 14 13 17 17 C 1.50699 * 110.71793 * 140.55738 * 15 14 13 18 18 C 1.38235 * 119.99940 * 301.17902 * 17 15 14 19 19 C 1.38239 * 120.00092 * 179.81233 * 18 17 15 20 20 C 1.38235 * 119.99713 * 0.39736 * 19 18 17 21 21 C 1.38234 * 120.00385 * 359.85433 * 20 19 18 22 22 C 1.38233 * 119.99601 * 359.95901 * 21 20 19 23 23 C 1.55149 * 102.94305 * 22.19408 * 15 14 13 24 24 F 1.39895 * 111.00760 * 82.56987 * 23 15 14 25 25 C 1.52997 * 111.00251 * 206.38588 * 23 15 14 26 26 O 1.42909 * 109.47287 * 179.97438 * 25 23 15 27 27 C 1.47429 * 125.64462 * 359.68422 * 13 11 10 28 28 H 0.97001 * 119.99591 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46589 * 299.99965 * 10 9 7 30 30 H 1.08997 * 109.47188 * 59.99864 * 10 9 7 31 31 H 1.09005 * 109.87981 * 300.43948 * 14 13 11 32 32 H 1.09000 * 109.88329 * 61.44408 * 14 13 11 33 33 H 1.08003 * 120.00221 * 359.97438 * 18 17 15 34 34 H 1.08003 * 120.00141 * 180.23011 * 19 18 17 35 35 H 1.08003 * 119.99837 * 179.83364 * 20 19 18 36 36 H 1.07999 * 119.99976 * 179.97438 * 21 20 19 37 37 H 1.07997 * 119.99876 * 179.97438 * 22 21 20 38 38 H 1.09005 * 109.47514 * 299.99545 * 25 23 15 39 39 H 1.09001 * 109.47415 * 59.99730 * 25 23 15 40 40 H 0.96693 * 114.00163 * 179.97438 * 26 25 23 41 41 H 1.08998 * 110.36781 * 274.74936 * 27 13 11 42 42 H 1.09001 * 110.36354 * 37.07986 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1041 1.6965 -1.2125 5 1 3.1040 1.6965 1.2125 6 1 1.2853 2.7465 -0.0006 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0021 11 6 1.9876 -5.3027 0.0017 12 8 0.7913 -5.5023 0.0009 13 7 2.8443 -6.3431 0.0022 14 6 2.4669 -7.7640 0.0024 15 6 3.7732 -8.5851 0.0292 16 1 4.0590 -8.8880 -0.9780 17 6 3.6296 -9.7861 0.9281 18 6 3.3129 -9.6164 2.2630 19 6 3.1774 -10.7183 3.0867 20 6 3.3667 -11.9894 2.5774 21 6 3.6885 -12.1588 1.2438 22 6 3.8202 -11.0572 0.4192 23 6 4.8023 -7.5819 0.6137 24 9 4.7327 -7.5487 2.0105 25 6 6.2202 -7.9158 0.1459 26 8 7.1396 -6.9733 0.7016 27 6 4.3153 -6.2447 -0.0034 28 1 -0.4849 -0.8401 -0.0004 29 1 3.1252 -3.7316 -0.8875 30 1 3.1239 -3.7309 0.8925 31 1 1.8695 -7.9887 0.8861 32 1 1.8984 -7.9967 -0.8980 33 1 3.1687 -8.6231 2.6618 34 1 2.9263 -10.5859 4.1287 35 1 3.2635 -12.8501 3.2215 36 1 3.8368 -13.1519 0.8460 37 1 4.0721 -11.1895 -0.6226 38 1 6.4849 -8.9202 0.4766 39 1 6.2646 -7.8680 -0.9421 40 1 8.0600 -7.1246 0.4470 41 1 4.6845 -6.1385 -1.0235 42 1 4.6416 -5.4039 0.6086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141554413.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:04 Heat of formation + Delta-G solvation = -100.987167 kcal Electronic energy + Delta-G solvation = -27018.004300 eV Core-core repulsion = 23003.715197 eV Total energy + Delta-G solvation = -4014.289103 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.02451 -40.20161 -39.17796 -37.64769 -36.57860 -33.29750 -32.52070 -31.20998 -30.96266 -30.00478 -27.97835 -26.23400 -24.86171 -23.80976 -22.88940 -21.78019 -20.56631 -19.64524 -18.27412 -17.87917 -17.35247 -16.87908 -16.74583 -16.06654 -15.74168 -15.43929 -15.29896 -15.01898 -14.57009 -14.33648 -14.07000 -13.85816 -13.79675 -13.52111 -13.37119 -13.16729 -13.08680 -12.70140 -12.54457 -12.39285 -12.16868 -11.92614 -11.84451 -11.61656 -11.35135 -11.11008 -10.91532 -10.90658 -10.51641 -10.16361 -9.59054 -9.56886 -9.17271 -9.04312 -9.00698 -8.67083 -8.22285 -6.67270 -6.61467 -3.99510 0.98978 1.14079 2.68293 2.90426 3.27136 3.33912 3.39018 3.41405 3.47522 3.58922 3.81895 4.00788 4.07083 4.25710 4.35583 4.48811 4.61605 4.64308 4.74582 4.83049 4.87373 4.91654 4.93585 5.07187 5.21993 5.23175 5.32458 5.35245 5.41839 5.53040 5.56832 5.66817 5.74798 5.78325 5.79522 6.00967 6.15202 6.20214 6.26625 6.30511 6.70757 7.12582 7.44649 7.92865 8.38626 8.50808 9.27801 10.82469 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.002651 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.461875 B =10559.045965 C =11357.594594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.035 3.965 3 Si 1.084 2.916 4 H -0.285 1.285 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.607 4.607 8 H 0.066 0.934 9 S -0.115 6.115 10 C -0.125 4.125 11 C 0.550 3.450 12 O -0.511 6.511 13 N -0.626 5.626 14 C 0.117 3.883 15 C -0.075 4.075 16 H 0.111 0.889 17 C -0.086 4.086 18 C -0.097 4.097 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.125 4.125 22 C -0.109 4.109 23 C 0.119 3.881 24 F -0.178 7.178 25 C 0.068 3.932 26 O -0.561 6.561 27 C 0.088 3.912 28 H 0.278 0.722 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.135 0.865 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.385 0.615 41 H 0.089 0.911 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.619 -25.469 0.014 29.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.175 4.175 3 Si 0.910 3.090 4 H -0.211 1.211 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.755 4.755 8 H 0.084 0.916 9 S 0.111 5.889 10 C -0.276 4.276 11 C 0.339 3.661 12 O -0.384 6.384 13 N -0.363 5.363 14 C -0.006 4.006 15 C -0.095 4.095 16 H 0.130 0.870 17 C -0.086 4.086 18 C -0.115 4.115 19 C -0.139 4.139 20 C -0.135 4.135 21 C -0.143 4.143 22 C -0.127 4.127 23 C 0.100 3.900 24 F -0.158 7.158 25 C -0.011 4.011 26 O -0.367 6.367 27 C -0.035 4.035 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.153 0.847 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.233 0.767 41 H 0.107 0.893 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.980 -23.797 0.310 27.108 hybrid contribution 2.364 -1.727 -0.142 2.931 sum 15.344 -25.523 0.168 29.781 Atomic orbital electron populations 1.70802 1.06701 1.30961 1.43340 1.26062 0.96326 1.02136 0.93001 0.83329 0.74756 0.74169 0.76732 1.21131 1.21099 1.20275 1.23691 0.96030 0.92087 1.63647 0.91576 1.84814 1.08007 0.98829 1.97226 1.23307 1.05138 0.93914 1.05262 1.20018 0.85626 0.85338 0.75124 1.90721 1.14783 1.85030 1.47911 1.48437 1.06149 1.05620 1.76131 1.21965 0.95119 0.79989 1.03486 1.21741 0.95062 0.92842 0.99810 0.87036 1.19396 1.01857 0.93203 0.94133 1.21444 0.97105 0.99919 0.93024 1.21216 1.00081 0.92514 1.00077 1.21207 0.99388 0.97294 0.95624 1.21091 1.00699 0.98563 0.93981 1.21004 1.00225 0.91761 0.99712 1.21958 0.94459 0.96285 0.77316 1.92853 1.97008 1.97005 1.28939 1.22518 0.87728 0.93015 0.97802 1.86546 1.20583 1.54279 1.75254 1.22869 0.80969 0.97642 1.02070 0.90994 0.88924 0.88848 0.90512 0.90397 0.84749 0.85905 0.86146 0.86034 0.85985 0.91871 0.91273 0.76701 0.89341 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.78 13.67 55.49 0.76 -27.03 16 2 C 0.04 1.04 5.49 -17.43 -0.10 0.94 16 3 Si 1.08 25.18 29.92 -169.99 -5.09 20.09 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.61 -17.71 9.50 30.94 0.29 -17.42 16 8 H 0.07 1.85 7.80 -52.48 -0.41 1.44 16 9 S -0.12 -3.16 19.60 -107.50 -2.11 -5.27 16 10 C -0.13 -2.65 5.16 36.00 0.19 -2.46 16 11 C 0.55 10.87 7.87 -10.99 -0.09 10.79 16 12 O -0.51 -11.99 16.19 5.55 0.09 -11.90 16 13 N -0.63 -9.30 3.32 -170.39 -0.57 -9.86 16 14 C 0.12 1.45 6.37 -3.07 -0.02 1.43 16 15 C -0.08 -0.67 2.62 -89.94 -0.24 -0.91 16 16 H 0.11 0.69 7.85 -51.93 -0.41 0.28 16 17 C -0.09 -0.80 4.90 -104.62 -0.51 -1.31 16 18 C -0.10 -1.03 7.53 -39.58 -0.30 -1.33 16 19 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 20 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16 21 C -0.13 -0.94 10.05 -39.58 -0.40 -1.33 16 22 C -0.11 -0.84 9.69 -39.58 -0.38 -1.22 16 23 C 0.12 1.19 1.07 -88.37 -0.09 1.10 16 24 F -0.18 -2.30 13.48 2.25 0.03 -2.27 16 25 C 0.07 0.48 6.30 37.16 0.23 0.72 16 26 O -0.56 -4.64 13.47 -35.23 -0.47 -5.11 16 27 C 0.09 1.03 5.87 -2.42 -0.01 1.02 16 28 H 0.28 8.92 7.12 -40.82 -0.29 8.62 16 29 H 0.09 1.80 8.14 -51.91 -0.42 1.38 16 30 H 0.09 1.88 7.85 -51.92 -0.41 1.48 16 31 H 0.08 1.05 7.03 -51.93 -0.36 0.69 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.13 1.61 6.18 -52.48 -0.32 1.29 16 34 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 35 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 36 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.12 0.66 7.98 -52.49 -0.42 0.24 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 40 H 0.39 1.28 9.12 45.56 0.42 1.70 16 41 H 0.09 0.84 7.99 -51.93 -0.41 0.42 16 42 H 0.10 1.26 7.48 -51.93 -0.39 0.87 16 LS Contribution 366.56 15.07 5.52 5.52 Total: -1.00 -37.73 366.56 -8.81 -46.55 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -4.76 Total: 2.12 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -2.22 Total: -12.84 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.19 Total: -36.89 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.38 Total: -17.01 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.03 Total: -2.27 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.09 Total: 20.09 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.11 Total: -5.27 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.73 -8.81 -46.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141554413.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.440 kcal (2) G-P(sol) polarization free energy of solvation -37.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds