Wall clock time and date at job start Tue Mar 31 2020 22:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 119.99718 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99677 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99857 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.38796 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00235 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00161 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00265 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47338 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00056 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00396 * 179.97438 * 11 10 9 14 14 C 1.47018 * 125.65372 * 179.97438 * 13 11 10 15 15 C 1.54321 * 107.27275 * 181.02018 * 14 13 11 16 16 H 1.08998 * 110.71954 * 263.82244 * 15 14 13 17 17 C 1.50699 * 110.71793 * 140.55738 * 15 14 13 18 18 C 1.38235 * 119.99940 * 301.17902 * 17 15 14 19 19 C 1.38239 * 120.00092 * 179.81233 * 18 17 15 20 20 C 1.38235 * 119.99713 * 0.39736 * 19 18 17 21 21 C 1.38234 * 120.00385 * 359.85433 * 20 19 18 22 22 C 1.38233 * 119.99601 * 359.95901 * 21 20 19 23 23 C 1.55149 * 102.94305 * 22.19408 * 15 14 13 24 24 F 1.39895 * 111.00760 * 82.56987 * 23 15 14 25 25 C 1.52997 * 111.00251 * 206.38588 * 23 15 14 26 26 O 1.42909 * 109.47287 * 179.97438 * 25 23 15 27 27 C 1.47429 * 125.64462 * 359.68422 * 13 11 10 28 28 H 0.97001 * 119.99591 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46589 * 299.99965 * 10 9 7 30 30 H 1.08997 * 109.47188 * 59.99864 * 10 9 7 31 31 H 1.09005 * 109.87981 * 300.43948 * 14 13 11 32 32 H 1.09000 * 109.88329 * 61.44408 * 14 13 11 33 33 H 1.08003 * 120.00221 * 359.97438 * 18 17 15 34 34 H 1.08003 * 120.00141 * 180.23011 * 19 18 17 35 35 H 1.08003 * 119.99837 * 179.83364 * 20 19 18 36 36 H 1.07999 * 119.99976 * 179.97438 * 21 20 19 37 37 H 1.07997 * 119.99876 * 179.97438 * 22 21 20 38 38 H 1.09005 * 109.47514 * 299.99545 * 25 23 15 39 39 H 1.09001 * 109.47415 * 59.99730 * 25 23 15 40 40 H 0.96693 * 114.00163 * 179.97438 * 26 25 23 41 41 H 1.08998 * 110.36781 * 274.74936 * 27 13 11 42 42 H 1.09001 * 110.36354 * 37.07986 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1041 1.6965 -1.2125 5 1 3.1040 1.6965 1.2125 6 1 1.2853 2.7465 -0.0006 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0021 11 6 1.9876 -5.3027 0.0017 12 8 0.7913 -5.5023 0.0009 13 7 2.8443 -6.3431 0.0022 14 6 2.4669 -7.7640 0.0024 15 6 3.7732 -8.5851 0.0292 16 1 4.0590 -8.8880 -0.9780 17 6 3.6296 -9.7861 0.9281 18 6 3.3129 -9.6164 2.2630 19 6 3.1774 -10.7183 3.0867 20 6 3.3667 -11.9894 2.5774 21 6 3.6885 -12.1588 1.2438 22 6 3.8202 -11.0572 0.4192 23 6 4.8023 -7.5819 0.6137 24 9 4.7327 -7.5487 2.0105 25 6 6.2202 -7.9158 0.1459 26 8 7.1396 -6.9733 0.7016 27 6 4.3153 -6.2447 -0.0034 28 1 -0.4849 -0.8401 -0.0004 29 1 3.1252 -3.7316 -0.8875 30 1 3.1239 -3.7309 0.8925 31 1 1.8695 -7.9887 0.8861 32 1 1.8984 -7.9967 -0.8980 33 1 3.1687 -8.6231 2.6618 34 1 2.9263 -10.5859 4.1287 35 1 3.2635 -12.8501 3.2215 36 1 3.8368 -13.1519 0.8460 37 1 4.0721 -11.1895 -0.6226 38 1 6.4849 -8.9202 0.4766 39 1 6.2646 -7.8680 -0.9421 40 1 8.0600 -7.1246 0.4470 41 1 4.6845 -6.1385 -1.0235 42 1 4.6416 -5.4039 0.6086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141554413.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:04 Heat of formation + Delta-G solvation = -127.748452 kcal Electronic energy + Delta-G solvation = -27019.164757 eV Core-core repulsion = 23003.715197 eV Total energy + Delta-G solvation = -4015.449559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.89561 -41.28706 -40.13558 -38.57248 -37.38432 -34.77510 -34.28608 -31.86451 -31.76710 -31.38142 -29.03354 -27.20355 -26.96434 -24.74945 -23.53842 -22.51262 -21.32367 -21.08213 -20.25985 -18.64072 -18.15614 -18.04637 -17.63128 -17.18205 -16.84899 -16.50166 -16.35693 -16.02379 -15.83823 -15.66623 -15.25509 -15.08362 -14.79253 -14.62885 -14.41167 -14.13927 -14.10128 -13.94572 -13.82199 -13.66877 -13.51574 -13.27329 -12.87308 -12.74848 -12.40239 -12.01019 -11.96143 -11.83386 -11.67047 -11.55427 -11.18732 -11.11701 -10.99633 -10.37556 -9.96593 -9.80349 -9.66093 -8.95213 -8.92205 -6.31254 0.34313 0.50412 1.05859 1.34180 1.50053 1.59901 1.79224 1.83287 2.31424 2.65942 2.77024 3.00036 3.00134 3.09577 3.25900 3.35559 3.64121 3.75984 3.83400 3.94191 3.99156 4.06985 4.15745 4.17121 4.24238 4.31483 4.39837 4.45953 4.52009 4.56500 4.59269 4.64012 4.78793 4.92255 5.03608 5.10497 5.16882 5.55749 5.61406 5.62952 5.64605 6.08043 6.10274 6.12463 6.86151 6.87845 7.03666 8.48230 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.002651 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.461875 B =10559.045965 C =11357.594594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.019 4.019 3 Si 1.137 2.863 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.279 1.279 7 C -0.614 4.614 8 H 0.075 0.925 9 S -0.191 6.191 10 C -0.101 4.101 11 C 0.548 3.452 12 O -0.560 6.560 13 N -0.615 5.615 14 C 0.111 3.889 15 C -0.058 4.058 16 H 0.154 0.846 17 C -0.095 4.095 18 C -0.121 4.121 19 C -0.139 4.139 20 C -0.121 4.121 21 C -0.127 4.127 22 C -0.104 4.104 23 C 0.112 3.888 24 F -0.201 7.201 25 C 0.073 3.927 26 O -0.588 6.588 27 C 0.079 3.921 28 H 0.260 0.740 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.124 0.876 35 H 0.140 0.860 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.405 0.595 41 H 0.123 0.877 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.029 -27.443 -1.654 33.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.222 4.222 3 Si 0.954 3.046 4 H -0.185 1.185 5 H -0.189 1.189 6 H -0.204 1.204 7 C -0.761 4.761 8 H 0.093 0.907 9 S 0.036 5.964 10 C -0.252 4.252 11 C 0.337 3.663 12 O -0.439 6.439 13 N -0.350 5.350 14 C -0.011 4.011 15 C -0.077 4.077 16 H 0.171 0.829 17 C -0.096 4.096 18 C -0.139 4.139 19 C -0.157 4.157 20 C -0.139 4.139 21 C -0.144 4.144 22 C -0.122 4.122 23 C 0.093 3.907 24 F -0.181 7.181 25 C -0.005 4.005 26 O -0.398 6.398 27 C -0.044 4.044 28 H 0.071 0.929 29 H 0.132 0.868 30 H 0.120 0.880 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.125 0.875 34 H 0.142 0.858 35 H 0.158 0.842 36 H 0.167 0.833 37 H 0.172 0.828 38 H 0.093 0.907 39 H 0.123 0.877 40 H 0.257 0.743 41 H 0.141 0.859 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.463 -25.836 -1.358 30.666 hybrid contribution 1.366 -1.293 0.431 1.929 sum 17.829 -27.129 -0.927 32.476 Atomic orbital electron populations 1.70922 1.08000 1.29977 1.45814 1.27882 0.96316 1.06398 0.91580 0.82719 0.73952 0.69387 0.78507 1.18521 1.18923 1.20407 1.24016 0.96492 0.92606 1.62984 0.90682 1.85039 1.12814 1.01116 1.97462 1.23159 1.02242 0.93219 1.06622 1.19713 0.85418 0.85810 0.75407 1.90697 1.16787 1.85647 1.50719 1.48323 1.07404 1.05715 1.73545 1.22169 0.97395 0.78799 1.02743 1.21747 0.92325 0.91768 1.01822 0.82879 1.19453 1.02511 0.94188 0.93430 1.21381 0.99005 0.99094 0.94425 1.21364 1.00899 0.93127 1.00342 1.21502 0.98663 0.97121 0.96599 1.21494 0.99428 0.99929 0.93575 1.21353 0.98832 0.90727 1.01258 1.22284 0.97003 0.95325 0.76070 1.92821 1.97269 1.97039 1.31009 1.22572 0.85264 0.93099 0.99583 1.86490 1.22320 1.54958 1.76027 1.23236 0.78527 0.98574 1.04025 0.92891 0.86795 0.87974 0.92817 0.89718 0.87478 0.85785 0.84205 0.83264 0.82766 0.90665 0.87724 0.74328 0.85908 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.87 13.67 21.65 0.30 -58.57 16 2 C -0.02 -1.10 5.49 84.86 0.47 -0.64 16 3 Si 1.14 49.95 29.92 68.60 2.05 52.01 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.61 -36.18 9.50 67.95 0.65 -35.53 16 8 H 0.07 4.15 7.80 -2.91 -0.02 4.13 16 9 S -0.19 -10.89 19.60 -56.49 -1.11 -12.00 16 10 C -0.10 -4.31 5.16 71.23 0.37 -3.95 16 11 C 0.55 22.14 7.87 87.66 0.69 22.83 16 12 O -0.56 -27.55 16.19 -3.05 -0.05 -27.60 16 13 N -0.62 -18.03 3.32 -811.39 -2.70 -20.73 16 14 C 0.11 2.69 6.37 86.73 0.55 3.24 16 15 C -0.06 -0.88 2.62 -10.36 -0.03 -0.91 16 16 H 0.15 1.07 7.85 -2.39 -0.02 1.06 16 17 C -0.10 -1.60 4.90 -19.87 -0.10 -1.69 16 18 C -0.12 -2.61 7.53 22.27 0.17 -2.45 16 19 C -0.14 -2.60 10.05 22.27 0.22 -2.38 16 20 C -0.12 -1.71 10.05 22.27 0.22 -1.49 16 21 C -0.13 -1.46 10.05 22.27 0.22 -1.24 16 22 C -0.10 -1.22 9.69 22.27 0.22 -1.00 16 23 C 0.11 2.01 1.07 -9.33 -0.01 2.00 16 24 F -0.20 -5.22 13.48 44.97 0.61 -4.61 16 25 C 0.07 0.76 6.30 71.98 0.45 1.21 16 26 O -0.59 -8.10 13.47 -148.98 -2.01 -10.11 16 27 C 0.08 1.69 5.87 86.93 0.51 2.20 16 28 H 0.26 17.48 7.12 -92.71 -0.66 16.82 16 29 H 0.11 4.33 8.14 -2.39 -0.02 4.32 16 30 H 0.10 4.15 7.85 -2.40 -0.02 4.13 16 31 H 0.05 1.56 7.03 -2.38 -0.02 1.54 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.11 2.83 6.18 -2.91 -0.02 2.81 16 34 H 0.12 2.10 8.06 -2.91 -0.02 2.07 16 35 H 0.14 1.35 8.06 -2.91 -0.02 1.32 16 36 H 0.15 0.89 8.06 -2.91 -0.02 0.86 16 37 H 0.15 0.79 7.98 -2.91 -0.02 0.77 16 38 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.10 0.36 8.07 -2.39 -0.02 0.34 16 40 H 0.41 1.47 9.12 -74.06 -0.68 0.79 16 41 H 0.12 1.84 7.99 -2.39 -0.02 1.82 16 42 H 0.08 2.05 7.48 -2.39 -0.02 2.03 16 Total: -1.00 -87.35 366.56 2.18 -85.17 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.48 Total: 16.23 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: 4.61 Total: -19.79 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -2.40 Total: -79.30 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -2.06 Total: -37.71 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.61 Total: -4.61 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 2.05 Total: 52.01 kcal Atomic # 16 Polarization: -10.89 SS G_CDS: -1.11 Total: -12.00 kcal Total: -87.35 2.18 -85.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141554413.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.582 kcal (2) G-P(sol) polarization free energy of solvation -87.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds