Wall clock time and date at job start Tue Mar 31 2020 22:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00078 * 2 1 4 4 H 1.48502 * 109.47177 * 269.99913 * 3 2 1 5 5 H 1.48504 * 109.47096 * 29.99726 * 3 2 1 6 6 H 1.48495 * 109.47608 * 149.99851 * 3 2 1 7 7 C 1.38795 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00168 * 359.97438 * 7 2 1 9 9 S 1.76199 * 120.00300 * 180.02562 * 7 2 1 10 10 C 1.81005 * 100.00201 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47016 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99829 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99432 * 180.02562 * 11 10 9 14 14 C 1.48148 * 127.83194 * 180.02562 * 13 11 10 15 15 C 1.54385 * 104.61605 * 140.43624 * 14 13 11 16 16 H 1.08999 * 110.34784 * 264.99560 * 15 14 13 17 17 C 1.50706 * 110.34276 * 142.73603 * 15 14 13 18 18 C 1.38239 * 119.99771 * 139.77606 * 17 15 14 19 19 C 1.38234 * 119.99730 * 179.76629 * 18 17 15 20 20 C 1.38245 * 120.00067 * 0.50570 * 19 18 17 21 21 C 1.38232 * 119.99590 * 359.74832 * 20 19 18 22 22 C 1.38233 * 120.00411 * 359.97438 * 21 20 19 23 23 C 1.54285 * 104.96043 * 23.86519 * 15 14 13 24 24 F 1.39893 * 110.34432 * 241.12551 * 23 15 14 25 25 C 1.53006 * 110.43315 * 118.91619 * 23 15 14 26 26 O 1.42894 * 109.47205 * 178.34215 * 25 23 15 27 27 C 1.48142 * 127.84195 * 0.02836 * 13 11 10 28 28 H 0.96995 * 119.99853 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46756 * 60.00013 * 10 9 7 30 30 H 1.08994 * 109.46897 * 299.99900 * 10 9 7 31 31 H 1.09003 * 110.40509 * 259.21713 * 14 13 11 32 32 H 1.08999 * 110.40923 * 21.53543 * 14 13 11 33 33 H 1.07999 * 119.99843 * 359.97438 * 18 17 15 34 34 H 1.08002 * 120.00153 * 180.23041 * 19 18 17 35 35 H 1.07993 * 119.99747 * 179.72275 * 20 19 18 36 36 H 1.08004 * 119.99646 * 179.97438 * 21 20 19 37 37 H 1.07999 * 120.00296 * 179.97438 * 22 21 20 38 38 H 1.08999 * 109.46879 * 298.34561 * 25 23 15 39 39 H 1.09000 * 109.47121 * 58.33833 * 25 23 15 40 40 H 0.96699 * 113.99892 * 180.02562 * 26 25 23 41 41 H 1.09004 * 110.40635 * 100.77909 * 27 13 11 42 42 H 1.08992 * 110.50835 * 338.39724 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0014 9 16 3.7723 -1.2020 0.0012 10 6 4.0867 -2.9845 0.0025 11 6 5.5732 -3.2325 0.0026 12 8 6.3440 -2.2962 0.0024 13 7 6.0457 -4.4947 0.0030 14 6 7.4601 -4.9354 0.0037 15 6 7.4890 -6.1507 0.9554 16 1 7.7762 -5.8389 1.9596 17 6 8.4411 -7.1983 0.4386 18 6 9.2578 -7.8842 1.3181 19 6 10.1277 -8.8486 0.8445 20 6 10.1883 -9.1198 -0.5097 21 6 9.3753 -8.4302 -1.3897 22 6 8.5013 -7.4698 -0.9155 23 6 6.0442 -6.6917 0.9545 24 9 5.5019 -6.6327 2.2428 25 6 6.0123 -8.1289 0.4305 26 8 4.6720 -8.6224 0.4747 27 6 5.2687 -5.7560 0.0028 28 1 -0.4850 0.8400 0.0004 29 1 3.6441 -3.4321 -0.8873 30 1 3.6434 -3.4309 0.8926 31 1 7.7665 -5.2311 -0.9997 32 1 8.1055 -4.1412 0.3789 33 1 9.2139 -7.6689 2.3755 34 1 10.7631 -9.3871 1.5320 35 1 10.8710 -9.8700 -0.8801 36 1 9.4229 -8.6417 -2.4477 37 1 7.8665 -6.9308 -1.6031 38 1 6.3731 -8.1487 -0.5978 39 1 6.6512 -8.7564 1.0519 40 1 4.5766 -9.5306 0.1566 41 1 5.2326 -6.1799 -1.0007 42 1 4.2602 -5.5833 0.3782 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141554414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:07 Heat of formation + Delta-G solvation = -92.927901 kcal Electronic energy + Delta-G solvation = -27072.334785 eV Core-core repulsion = 23058.395158 eV Total energy + Delta-G solvation = -4013.939627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.87889 -40.67729 -39.21869 -37.57675 -36.54992 -33.42560 -32.42387 -31.41493 -30.50409 -30.08460 -28.07834 -26.13925 -25.60290 -24.34368 -22.88832 -22.15594 -20.09338 -19.73088 -17.98976 -17.71381 -17.35589 -16.97046 -16.46250 -16.17083 -15.74065 -15.56364 -15.13906 -14.99390 -14.77653 -14.54167 -14.31843 -14.10908 -13.76856 -13.71726 -13.52214 -13.10995 -12.97117 -12.79352 -12.69924 -12.28568 -12.18751 -11.94431 -11.68314 -11.40011 -11.27139 -11.23882 -10.99785 -10.96606 -10.60604 -10.50085 -9.85484 -9.60256 -9.34108 -9.13493 -8.99188 -8.79817 -8.49922 -6.91494 -6.27226 -3.99352 0.82465 0.93845 2.57240 2.84479 3.10334 3.23454 3.34053 3.49341 3.51726 3.58516 3.90791 4.00247 4.05731 4.34355 4.39797 4.43511 4.55610 4.63964 4.66126 4.68054 4.73950 4.88540 4.99650 5.02908 5.09255 5.11703 5.14073 5.17641 5.43207 5.49850 5.51591 5.56598 5.57379 5.71961 5.76933 5.98320 6.02224 6.07468 6.10994 6.13164 6.52069 7.19511 7.45858 7.95906 8.33543 8.44003 9.18680 10.82020 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022557 B = 0.002650 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.010460 B =10564.317484 C =11211.280569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.520 4.520 8 H 0.089 0.911 9 S -0.141 6.141 10 C -0.119 4.119 11 C 0.557 3.443 12 O -0.512 6.512 13 N -0.630 5.630 14 C 0.111 3.889 15 C -0.083 4.083 16 H 0.110 0.890 17 C -0.077 4.077 18 C -0.109 4.109 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.118 4.118 23 C 0.121 3.879 24 F -0.187 7.187 25 C 0.064 3.936 26 O -0.563 6.563 27 C 0.088 3.912 28 H 0.271 0.729 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.384 0.616 41 H 0.091 0.909 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.873 -24.030 -1.235 31.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.107 0.893 9 S 0.086 5.914 10 C -0.270 4.270 11 C 0.346 3.654 12 O -0.386 6.386 13 N -0.367 5.367 14 C -0.012 4.012 15 C -0.103 4.103 16 H 0.128 0.872 17 C -0.077 4.077 18 C -0.127 4.127 19 C -0.135 4.135 20 C -0.138 4.138 21 C -0.134 4.134 22 C -0.135 4.135 23 C 0.101 3.899 24 F -0.168 7.168 25 C -0.015 4.015 26 O -0.369 6.369 27 C -0.036 4.036 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.231 0.769 41 H 0.109 0.891 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 20.655 -21.769 -0.964 30.024 hybrid contribution -0.684 -1.011 -0.097 1.225 sum 19.972 -22.780 -1.060 30.314 Atomic orbital electron populations 1.69938 1.05893 1.27752 1.48052 1.24708 0.94456 0.98944 0.93197 0.86737 0.81916 0.83298 0.79911 1.19211 1.19920 1.15915 1.22303 0.88111 0.97591 1.58775 0.89311 1.84761 1.09504 0.99739 1.97438 1.23273 0.93308 1.04455 1.05944 1.19995 0.90657 0.80037 0.74676 1.90714 1.58888 1.40776 1.48229 1.48948 1.07003 1.04960 1.75742 1.22433 0.84505 0.95289 0.98959 1.21719 0.91878 0.94263 1.02409 0.87215 1.19505 0.97183 0.97185 0.93841 1.21102 0.95759 0.96132 0.99722 1.21173 0.98711 0.97825 0.95763 1.21216 0.99198 0.99812 0.93526 1.21162 0.96057 0.96267 0.99930 1.21130 0.99360 0.98248 0.94810 1.21743 0.92615 0.95267 0.80238 1.92925 1.87137 1.97361 1.39336 1.22895 0.84771 0.92925 1.00879 1.86527 1.26779 1.34562 1.89004 1.22893 0.97325 0.83711 0.99657 0.91936 0.88400 0.88270 0.90163 0.88741 0.85712 0.85839 0.85984 0.85747 0.85447 0.91045 0.91998 0.76858 0.89141 0.87898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.82 13.97 55.49 0.78 -26.05 16 2 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 3 Si 0.86 22.01 27.74 -169.99 -4.72 17.29 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 7 C -0.52 -15.21 10.04 30.94 0.31 -14.90 16 8 H 0.09 2.71 8.03 -52.48 -0.42 2.29 16 9 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 10 C -0.12 -2.43 5.14 36.01 0.18 -2.25 16 11 C 0.56 10.48 7.93 -10.98 -0.09 10.40 16 12 O -0.51 -11.35 16.13 5.56 0.09 -11.26 16 13 N -0.63 -8.92 3.32 -169.33 -0.56 -9.48 16 14 C 0.11 1.23 6.46 -2.41 -0.02 1.21 16 15 C -0.08 -0.77 3.13 -90.37 -0.28 -1.05 16 16 H 0.11 1.06 7.93 -51.93 -0.41 0.65 16 17 C -0.08 -0.57 3.27 -104.62 -0.34 -0.91 16 18 C -0.11 -0.75 9.46 -39.58 -0.37 -1.13 16 19 C -0.12 -0.69 10.05 -39.58 -0.40 -1.09 16 20 C -0.12 -0.67 10.05 -39.58 -0.40 -1.06 16 21 C -0.12 -0.67 10.05 -39.59 -0.40 -1.07 16 22 C -0.12 -0.77 6.69 -39.58 -0.26 -1.04 16 23 C 0.12 1.28 1.50 -89.23 -0.13 1.14 16 24 F -0.19 -2.59 16.76 2.25 0.04 -2.55 16 25 C 0.06 0.52 4.91 37.16 0.18 0.70 16 26 O -0.56 -5.01 13.39 -35.23 -0.47 -5.49 16 27 C 0.09 1.03 6.09 -2.43 -0.01 1.02 16 28 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.10 1.85 8.14 -51.92 -0.42 1.43 16 30 H 0.10 1.95 7.96 -51.92 -0.41 1.53 16 31 H 0.08 0.74 5.76 -51.93 -0.30 0.44 16 32 H 0.09 1.15 7.88 -51.93 -0.41 0.74 16 33 H 0.12 0.76 8.04 -52.49 -0.42 0.34 16 34 H 0.12 0.52 8.06 -52.49 -0.42 0.09 16 35 H 0.12 0.46 8.06 -52.49 -0.42 0.04 16 36 H 0.12 0.51 8.06 -52.48 -0.42 0.09 16 37 H 0.13 0.75 6.48 -52.49 -0.34 0.41 16 38 H 0.07 0.45 5.79 -51.93 -0.30 0.15 16 39 H 0.06 0.47 7.29 -51.93 -0.38 0.10 16 40 H 0.38 1.56 9.12 45.56 0.42 1.97 16 41 H 0.09 0.85 7.81 -51.93 -0.41 0.45 16 42 H 0.10 1.33 7.29 -51.93 -0.38 0.95 16 LS Contribution 361.06 15.07 5.44 5.44 Total: -1.00 -36.29 361.06 -8.14 -44.42 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -4.61 Total: 0.60 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -2.13 Total: -7.29 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.21 Total: -35.53 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.38 Total: -16.75 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.72 Total: 17.29 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.29 -8.14 -44.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141554414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.507 kcal (2) G-P(sol) polarization free energy of solvation -36.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds