Wall clock time and date at job start Tue Mar 31 2020 22:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86803 * 120.00104 * 2 1 4 4 H 1.48507 * 109.46779 * 269.99904 * 3 2 1 5 5 H 1.48496 * 109.47292 * 29.99370 * 3 2 1 6 6 H 1.48496 * 109.47298 * 149.99771 * 3 2 1 7 7 C 1.39931 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99730 * 164.59743 * 7 2 1 9 9 C 1.41404 * 120.00400 * 344.59801 * 7 2 1 10 10 C 1.40786 * 120.20490 * 335.37435 * 9 7 2 11 11 C 1.37660 * 119.90418 * 179.97438 * 10 9 7 12 12 C 1.38516 * 120.32465 * 359.97438 * 11 10 9 13 13 C 1.39317 * 120.42250 * 359.97438 * 12 11 10 14 14 N 1.39697 * 119.95218 * 180.02562 * 13 12 11 15 15 C 1.34774 * 120.00010 * 144.32389 * 14 13 12 16 16 O 1.21403 * 120.00099 * 4.52107 * 15 14 13 17 17 C 1.48973 * 120.00146 * 184.52670 * 15 14 13 18 18 O 1.20783 * 119.99791 * 359.97438 * 17 15 14 19 19 C 1.50700 * 119.99690 * 179.97438 * 17 15 14 20 20 H 1.08998 * 109.47359 * 319.99651 * 19 17 15 21 21 O 1.42909 * 109.46575 * 199.99518 * 19 17 15 22 22 C 1.53000 * 109.47388 * 79.99999 * 19 17 15 23 23 H 1.08998 * 109.47154 * 59.99527 * 22 19 17 24 24 O 1.42898 * 109.46837 * 299.99693 * 22 19 17 25 25 C 1.52999 * 109.47169 * 179.97438 * 22 19 17 26 26 H 1.08998 * 109.47271 * 59.99841 * 25 22 19 27 27 O 1.42900 * 109.46800 * 299.99740 * 25 22 19 28 28 C 1.53000 * 109.47169 * 179.97438 * 25 22 19 29 29 O 1.42893 * 109.47398 * 185.00022 * 28 25 22 30 30 C 1.38353 * 120.09078 * 0.27747 * 13 12 11 31 31 H 0.97007 * 119.99922 * 0.02562 * 1 2 3 32 32 H 1.07999 * 120.05213 * 0.02562 * 10 9 7 33 33 H 1.07998 * 119.83972 * 179.97438 * 11 10 9 34 34 H 1.07996 * 119.78752 * 179.97438 * 12 11 10 35 35 H 0.96997 * 120.00053 * 324.31539 * 14 13 12 36 36 H 0.96696 * 114.00213 * 300.00074 * 21 19 17 37 37 H 0.96696 * 113.99940 * 299.99884 * 24 22 19 38 38 H 0.96702 * 114.00548 * 299.99790 * 27 25 22 39 39 H 1.09003 * 109.46873 * 304.99788 * 28 25 22 40 40 H 1.09003 * 109.47002 * 64.99659 * 28 25 22 41 41 H 0.96699 * 114.00120 * 180.02562 * 29 28 25 42 42 H 1.07999 * 120.16541 * 179.69953 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0464 -1.4002 5 1 1.4398 2.6527 0.6999 6 1 3.5399 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0588 -1.2288 -0.2479 9 6 1.3390 -2.4143 0.3263 10 6 0.1799 -2.3861 1.1249 11 6 -0.4667 -3.5605 1.4378 12 6 0.0172 -4.7713 0.9703 13 6 1.1624 -4.8148 0.1782 14 7 1.6415 -6.0413 -0.2884 15 6 2.2008 -6.1250 -1.5118 16 8 2.3631 -5.1211 -2.1749 17 6 2.6198 -7.4493 -2.0503 18 8 2.4586 -8.4479 -1.3904 19 6 3.2447 -7.5427 -3.4185 20 1 2.7297 -6.8659 -4.1002 21 8 3.1328 -8.8827 -3.9026 22 6 4.7218 -7.1533 -3.3323 23 1 5.2367 -7.8301 -2.6505 24 8 4.8336 -5.8135 -2.8481 25 6 5.3563 -7.2488 -4.7212 26 1 4.8414 -6.5723 -5.4032 27 8 5.2444 -8.5889 -5.2047 28 6 6.8332 -6.8588 -4.6351 29 8 7.3970 -6.8352 -5.9479 30 6 1.8289 -3.6456 -0.1426 31 1 -0.4850 0.8401 -0.0004 32 1 -0.2020 -1.4445 1.4908 33 1 -1.3555 -3.5376 2.0508 34 1 -0.4967 -5.6873 1.2214 35 1 1.5716 -6.8327 0.2680 36 1 3.5692 -9.5404 -3.3440 37 1 4.3972 -5.1558 -3.4067 38 1 5.6807 -9.2465 -4.6459 39 1 6.9223 -5.8707 -4.1836 40 1 7.3663 -7.5870 -4.0238 41 1 8.3335 -6.5953 -5.9695 42 1 2.7196 -3.6785 -0.7525 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144902432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:21 Heat of formation + Delta-G solvation = -235.482609 kcal Electronic energy + Delta-G solvation = -29694.845509 eV Core-core repulsion = 25219.598586 eV Total energy + Delta-G solvation = -4475.246923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.08035 -39.46335 -38.73994 -37.21595 -37.01056 -36.16267 -35.81608 -34.61095 -33.09351 -30.63893 -29.89811 -29.29986 -28.38809 -25.64832 -25.34400 -23.43705 -22.21598 -21.23442 -20.79967 -19.63666 -18.38748 -18.07797 -17.73359 -17.52190 -17.15357 -17.00650 -16.57982 -15.62985 -15.54180 -15.42044 -15.03088 -14.66900 -14.48886 -14.24160 -13.86917 -13.71202 -13.66159 -13.23722 -13.14130 -13.04869 -12.95509 -12.55092 -12.28706 -11.99368 -11.74064 -11.48575 -11.30788 -11.10499 -10.94098 -10.82588 -10.71861 -10.55497 -10.44564 -10.17629 -9.87085 -9.80774 -9.45553 -9.11469 -8.87809 -7.51840 -7.03725 -6.76295 -4.39429 0.80240 2.57507 2.76546 2.87158 3.06449 3.09963 3.15595 3.25109 3.48787 3.76552 3.92250 4.04924 4.20713 4.26499 4.33001 4.48963 4.58169 4.65599 4.70509 4.76972 4.85779 5.18269 5.21954 5.64945 5.65225 6.17434 6.32821 6.48931 6.59440 6.91404 6.96775 7.01301 7.11432 7.20083 7.22325 7.30231 7.37566 7.43302 7.62722 7.87625 7.99706 8.03297 8.12096 8.40159 8.61344 8.87348 8.91392 10.17348 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012473 B = 0.003097 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.231471 B = 9039.056189 C =10977.568075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.454 4.454 8 H 0.078 0.922 9 C 0.116 3.884 10 C -0.169 4.169 11 C -0.093 4.093 12 C -0.258 4.258 13 C 0.139 3.861 14 N -0.638 5.638 15 C 0.471 3.529 16 O -0.481 6.481 17 C 0.335 3.665 18 O -0.420 6.420 19 C 0.053 3.947 20 H 0.142 0.858 21 O -0.516 6.516 22 C 0.059 3.941 23 H 0.104 0.896 24 O -0.537 6.537 25 C 0.087 3.913 26 H 0.112 0.888 27 O -0.529 6.529 28 C 0.046 3.954 29 O -0.565 6.565 30 C -0.206 4.206 31 H 0.280 0.720 32 H 0.123 0.877 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.406 0.594 36 H 0.377 0.623 37 H 0.394 0.606 38 H 0.368 0.632 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.379 0.621 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.529 -12.748 -5.332 17.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.484 4.484 8 H 0.096 0.904 9 C 0.113 3.887 10 C -0.189 4.189 11 C -0.112 4.112 12 C -0.279 4.279 13 C 0.048 3.952 14 N -0.283 5.283 15 C 0.254 3.746 16 O -0.355 6.355 17 C 0.205 3.795 18 O -0.289 6.289 19 C -0.008 4.008 20 H 0.159 0.841 21 O -0.320 6.320 22 C -0.002 4.002 23 H 0.122 0.878 24 O -0.346 6.346 25 C 0.026 3.974 26 H 0.129 0.871 27 O -0.333 6.333 28 C -0.033 4.033 29 O -0.371 6.371 30 C -0.227 4.227 31 H 0.091 0.909 32 H 0.141 0.859 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.241 0.759 36 H 0.225 0.775 37 H 0.245 0.755 38 H 0.214 0.786 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.226 0.774 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.401 -12.305 -6.142 16.659 hybrid contribution 1.003 0.314 0.979 1.437 sum 10.405 -11.990 -5.162 16.694 Atomic orbital electron populations 1.69817 1.07559 1.29172 1.35381 1.25912 0.94763 1.01342 0.92269 0.86292 0.80564 0.80501 0.79261 1.19451 1.20114 1.18462 1.19561 0.97303 0.90778 1.40741 0.90371 1.17512 0.91292 0.91685 0.88180 1.21462 0.99086 0.96950 1.01401 1.20483 0.98434 0.92603 0.99640 1.20087 0.99413 0.97154 1.11234 1.17467 0.95005 0.83421 0.99321 1.43255 1.57320 1.11769 1.15943 1.20465 0.80894 0.90323 0.82961 1.90747 1.50838 1.35933 1.58015 1.25811 0.75196 0.88946 0.89583 1.90403 1.41614 1.38677 1.58254 1.22847 0.96649 0.87699 0.93643 0.84086 1.86788 1.79406 1.14295 1.51547 1.23146 0.93538 0.87276 0.96221 0.87787 1.86645 1.79096 1.14750 1.54061 1.22540 0.94057 0.86176 0.94583 0.87053 1.86771 1.78965 1.15037 1.52543 1.22849 0.94355 1.01380 0.84678 1.86526 1.29454 1.93152 1.27923 1.21084 1.03323 0.91118 1.07166 0.90865 0.85938 0.88884 0.89178 0.75885 0.77481 0.75473 0.78563 0.91482 0.93458 0.77373 0.86818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.33 10.82 55.55 0.60 -19.73 16 2 C 0.07 1.86 5.19 -17.34 -0.09 1.77 16 3 Si 0.91 18.50 29.59 -169.99 -5.03 13.47 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.45 -12.00 9.06 -37.74 -0.34 -12.34 16 8 H 0.08 2.00 7.89 -52.49 -0.41 1.58 16 9 C 0.12 3.09 5.58 -106.85 -0.60 2.49 16 10 C -0.17 -4.33 8.69 -38.83 -0.34 -4.67 16 11 C -0.09 -2.12 10.02 -39.69 -0.40 -2.52 16 12 C -0.26 -5.60 9.97 -39.08 -0.39 -5.99 16 13 C 0.14 3.07 6.27 -83.83 -0.53 2.54 16 14 N -0.64 -11.42 5.31 -10.46 -0.06 -11.48 16 15 C 0.47 7.94 7.27 -11.81 -0.09 7.85 16 16 O -0.48 -9.14 11.97 -13.23 -0.16 -9.30 16 17 C 0.34 4.41 6.34 -29.86 -0.19 4.22 16 18 O -0.42 -5.71 16.44 -13.14 -0.22 -5.93 16 19 C 0.05 0.56 2.83 -27.88 -0.08 0.48 16 20 H 0.14 1.53 8.01 -51.93 -0.42 1.12 16 21 O -0.52 -5.19 11.13 -65.27 -0.73 -5.91 16 22 C 0.06 0.52 2.58 -26.73 -0.07 0.46 16 23 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 24 O -0.54 -6.00 10.76 -53.91 -0.58 -6.58 16 25 C 0.09 0.75 3.01 -26.73 -0.08 0.67 16 26 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 27 O -0.53 -4.85 11.31 -61.11 -0.69 -5.54 16 28 C 0.05 0.36 6.60 37.16 0.25 0.60 16 29 O -0.57 -5.09 13.62 -40.05 -0.55 -5.64 16 30 C -0.21 -5.08 8.43 -38.66 -0.33 -5.41 16 31 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 32 H 0.12 3.22 6.07 -52.49 -0.32 2.90 16 33 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 34 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.41 6.20 8.29 -40.82 -0.34 5.86 16 36 H 0.38 2.59 8.65 45.56 0.39 2.98 16 37 H 0.39 4.09 8.12 45.56 0.37 4.46 16 38 H 0.37 1.92 9.05 45.56 0.41 2.33 16 39 H 0.07 0.53 7.54 -51.93 -0.39 0.14 16 40 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.38 1.70 9.12 45.56 0.42 2.12 16 42 H 0.11 2.82 6.28 -52.49 -0.33 2.49 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -33.07 361.96 -7.07 -40.15 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -1.86 Total: 20.87 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -3.26 Total: -9.83 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: 0.55 Total: -31.21 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -2.92 Total: -38.90 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.07 -7.07 -40.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144902432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.337 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds