Wall clock time and date at job start Tue Mar 31 2020 22:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86805 * 119.99906 * 2 1 4 4 H 1.48503 * 109.47020 * 270.00077 * 3 2 1 5 5 H 1.48504 * 109.46760 * 29.99989 * 3 2 1 6 6 H 1.48497 * 109.47047 * 149.99988 * 3 2 1 7 7 C 1.39932 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99671 * 164.58744 * 7 2 1 9 9 C 1.41404 * 120.00019 * 344.58495 * 7 2 1 10 10 C 1.40783 * 120.20908 * 335.37767 * 9 7 2 11 11 C 1.37655 * 119.89915 * 180.02562 * 10 9 7 12 12 C 1.38508 * 120.33181 * 0.02562 * 11 10 9 13 13 C 1.39314 * 120.42238 * 359.97438 * 12 11 10 14 14 N 1.39703 * 119.95685 * 179.97438 * 13 12 11 15 15 C 1.34771 * 119.99914 * 144.31480 * 14 13 12 16 16 O 1.21398 * 120.00189 * 4.51966 * 15 14 13 17 17 C 1.48970 * 120.00129 * 184.53050 * 15 14 13 18 18 O 1.20788 * 120.00020 * 359.97438 * 17 15 14 19 19 C 1.50705 * 120.00415 * 179.97438 * 17 15 14 20 20 H 1.08993 * 109.46547 * 319.99778 * 19 17 15 21 21 O 1.42894 * 109.47085 * 199.99582 * 19 17 15 22 22 C 1.53000 * 109.46998 * 79.99268 * 19 17 15 23 23 H 1.09002 * 109.47545 * 295.00573 * 22 19 17 24 24 O 1.42904 * 109.47179 * 55.00336 * 22 19 17 25 25 C 1.52995 * 109.46793 * 175.00088 * 22 19 17 26 26 H 1.08999 * 109.47446 * 300.00007 * 25 22 19 27 27 O 1.42893 * 109.47397 * 60.00288 * 25 22 19 28 28 C 1.53006 * 109.47260 * 180.02562 * 25 22 19 29 29 O 1.42898 * 109.47618 * 174.99982 * 28 25 22 30 30 C 1.38358 * 120.09190 * 0.25774 * 13 12 11 31 31 H 0.96995 * 120.00354 * 359.97438 * 1 2 3 32 32 H 1.07998 * 120.04739 * 0.03864 * 10 9 7 33 33 H 1.08004 * 119.83659 * 180.02562 * 11 10 9 34 34 H 1.08005 * 119.79030 * 179.97438 * 12 11 10 35 35 H 0.96992 * 119.99800 * 324.58863 * 14 13 12 36 36 H 0.96705 * 114.00255 * 299.99424 * 21 19 17 37 37 H 0.96703 * 113.99669 * 59.99806 * 24 22 19 38 38 H 0.96706 * 113.99893 * 60.00101 * 27 25 22 39 39 H 1.09002 * 109.47263 * 295.00733 * 28 25 22 40 40 H 1.09007 * 109.47123 * 55.00177 * 28 25 22 41 41 H 0.96691 * 114.00218 * 180.02562 * 29 28 25 42 42 H 1.08003 * 120.17155 * 179.74268 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4396 2.6527 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0589 -1.2285 -0.2491 9 6 1.3391 -2.4146 0.3244 10 6 0.1801 -2.3870 1.1232 11 6 -0.4657 -3.5617 1.4361 12 6 0.0192 -4.7723 0.9694 13 6 1.1650 -4.8154 0.1780 14 7 1.6459 -6.0418 -0.2870 15 6 2.2059 -6.1261 -1.5100 16 8 2.3671 -5.1228 -2.1742 17 6 2.6268 -7.4504 -2.0469 18 8 2.4666 -8.4486 -1.3860 19 6 3.2525 -7.5447 -3.4147 20 1 2.7369 -6.8693 -4.0973 21 8 3.1426 -8.8852 -3.8973 22 6 4.7290 -7.1532 -3.3282 23 1 4.8107 -6.1037 -3.0454 24 8 5.3798 -7.9628 -2.3469 25 6 5.3941 -7.3680 -4.6892 26 1 5.3124 -8.4176 -4.9719 27 8 4.7433 -6.5585 -5.6705 28 6 6.8708 -6.9771 -4.6026 29 8 7.5188 -7.2865 -5.8381 30 6 1.8306 -3.6457 -0.1432 31 1 -0.4850 0.8400 0.0004 32 1 -0.2019 -1.4456 1.4896 33 1 -1.3550 -3.5394 2.0485 34 1 -0.4941 -5.6887 1.2205 35 1 1.5732 -6.8334 0.2687 36 1 3.5796 -9.5418 -3.3378 37 1 5.3465 -8.9109 -2.5343 38 1 4.7767 -5.6103 -5.4831 39 1 6.9528 -5.9079 -4.4071 40 1 7.3467 -7.5318 -3.7939 41 1 8.4598 -7.0650 -5.8549 42 1 2.7213 -3.6780 -0.7531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144902435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:26 Heat of formation + Delta-G solvation = -237.492144 kcal Electronic energy + Delta-G solvation = -29548.848748 eV Core-core repulsion = 25073.514684 eV Total energy + Delta-G solvation = -4475.334063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.17311 -39.63735 -38.72763 -37.25227 -37.22841 -35.97964 -35.96640 -34.67391 -33.12858 -30.93321 -29.92555 -29.43212 -28.46342 -25.65454 -25.36341 -23.50992 -22.08071 -21.27647 -20.82848 -19.67697 -18.45624 -18.17600 -18.06442 -17.59766 -17.23735 -16.84478 -16.72924 -15.73329 -15.60619 -15.40300 -15.13103 -14.73790 -14.63246 -14.18953 -13.96227 -13.84854 -13.69682 -13.35081 -13.13947 -13.06628 -12.97879 -12.62800 -12.33461 -12.24715 -11.77326 -11.55257 -11.34114 -11.13127 -11.00075 -10.88171 -10.72407 -10.57556 -10.48127 -10.20592 -9.98466 -9.88511 -9.50695 -9.15848 -8.92957 -7.54592 -7.07179 -6.78354 -4.41820 0.78632 2.54075 2.72857 2.81429 3.05135 3.08372 3.13648 3.23972 3.46435 3.59034 3.89124 3.90589 4.13369 4.18790 4.25403 4.54866 4.56624 4.60861 4.66625 4.82319 4.92211 5.14188 5.19027 5.62527 5.65384 6.15033 6.29960 6.46186 6.55843 6.85274 6.88600 6.93617 6.97872 7.03936 7.17438 7.22659 7.34559 7.39483 7.59032 7.84488 7.95135 8.00141 8.08381 8.35632 8.58490 8.84758 8.88688 10.15343 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011930 B = 0.003057 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.492422 B = 9156.962355 C =10972.584102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.078 0.922 9 C 0.117 3.883 10 C -0.168 4.168 11 C -0.092 4.092 12 C -0.257 4.257 13 C 0.138 3.862 14 N -0.634 5.634 15 C 0.465 3.535 16 O -0.486 6.486 17 C 0.337 3.663 18 O -0.413 6.413 19 C 0.054 3.946 20 H 0.155 0.845 21 O -0.529 6.529 22 C 0.053 3.947 23 H 0.128 0.872 24 O -0.546 6.546 25 C 0.091 3.909 26 H 0.113 0.887 27 O -0.541 6.541 28 C 0.044 3.956 29 O -0.565 6.565 30 C -0.207 4.207 31 H 0.281 0.719 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.408 0.592 36 H 0.376 0.624 37 H 0.376 0.624 38 H 0.379 0.621 39 H 0.053 0.947 40 H 0.063 0.937 41 H 0.380 0.620 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.467 -12.710 -5.218 17.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.484 4.484 8 H 0.096 0.904 9 C 0.114 3.886 10 C -0.188 4.188 11 C -0.111 4.111 12 C -0.278 4.278 13 C 0.047 3.953 14 N -0.280 5.280 15 C 0.247 3.753 16 O -0.361 6.361 17 C 0.206 3.794 18 O -0.283 6.283 19 C -0.007 4.007 20 H 0.172 0.828 21 O -0.334 6.334 22 C -0.008 4.008 23 H 0.146 0.854 24 O -0.351 6.351 25 C 0.031 3.969 26 H 0.131 0.869 27 O -0.346 6.346 28 C -0.034 4.034 29 O -0.370 6.370 30 C -0.229 4.229 31 H 0.092 0.908 32 H 0.141 0.859 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.243 0.757 36 H 0.224 0.776 37 H 0.224 0.776 38 H 0.227 0.773 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.227 0.773 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.357 -12.320 -6.003 16.594 hybrid contribution 0.981 0.371 0.941 1.409 sum 10.338 -11.949 -5.062 16.592 Atomic orbital electron populations 1.69808 1.07565 1.29238 1.35219 1.25917 0.94775 1.01369 0.92243 0.86284 0.80555 0.80458 0.79280 1.19427 1.20069 1.18459 1.19561 0.97295 0.90778 1.40776 0.90392 1.17508 0.91308 0.91636 0.88180 1.21463 0.99049 0.96982 1.01315 1.20487 0.98433 0.92575 0.99601 1.20085 0.99323 0.97211 1.11160 1.17477 0.95073 0.83355 0.99405 1.43274 1.56928 1.11856 1.15908 1.20610 0.81239 0.90422 0.83008 1.90827 1.51411 1.36044 1.57798 1.25637 0.75384 0.88965 0.89397 1.90396 1.41329 1.38602 1.57924 1.22830 0.96772 0.86966 0.94134 0.82771 1.86780 1.79770 1.15192 1.51697 1.23336 0.89659 0.98330 0.89439 0.85428 1.86739 1.78518 1.21640 1.48252 1.22429 0.89260 0.97910 0.87340 0.86888 1.86681 1.78350 1.21681 1.47915 1.22862 0.93883 0.99845 0.86784 1.86521 1.27131 1.87514 1.35882 1.21050 1.03345 0.91200 1.07267 0.90813 0.85880 0.88806 0.89088 0.75721 0.77594 0.77550 0.77299 0.92919 0.91843 0.77337 0.87106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.25 10.82 55.55 0.60 -19.65 16 2 C 0.07 1.85 5.19 -17.34 -0.09 1.76 16 3 Si 0.91 18.42 29.59 -169.99 -5.03 13.39 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.45 -12.00 9.06 -37.74 -0.34 -12.34 16 8 H 0.08 1.99 7.89 -52.48 -0.41 1.57 16 9 C 0.12 3.10 5.58 -106.85 -0.60 2.50 16 10 C -0.17 -4.30 8.69 -38.83 -0.34 -4.64 16 11 C -0.09 -2.10 10.01 -39.69 -0.40 -2.49 16 12 C -0.26 -5.56 9.97 -39.08 -0.39 -5.95 16 13 C 0.14 3.05 6.27 -83.83 -0.53 2.53 16 14 N -0.63 -11.41 5.31 -10.46 -0.06 -11.47 16 15 C 0.46 7.97 7.69 -11.81 -0.09 7.88 16 16 O -0.49 -9.64 14.05 5.46 0.08 -9.57 16 17 C 0.34 4.49 5.98 -29.86 -0.18 4.31 16 18 O -0.41 -5.60 16.44 -13.15 -0.22 -5.82 16 19 C 0.05 0.59 2.73 -27.88 -0.08 0.51 16 20 H 0.16 1.80 7.70 -51.93 -0.40 1.40 16 21 O -0.53 -5.24 12.24 -59.21 -0.72 -5.96 16 22 C 0.05 0.48 2.65 -26.73 -0.07 0.41 16 23 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 24 O -0.55 -4.61 12.05 -40.08 -0.48 -5.10 16 25 C 0.09 0.80 2.81 -26.73 -0.08 0.73 16 26 H 0.11 1.03 7.56 -51.93 -0.39 0.63 16 27 O -0.54 -5.73 12.73 -40.06 -0.51 -6.24 16 28 C 0.04 0.35 6.60 37.16 0.25 0.60 16 29 O -0.57 -5.02 13.62 -40.06 -0.55 -5.56 16 30 C -0.21 -5.14 8.43 -38.66 -0.33 -5.47 16 31 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 32 H 0.12 3.22 6.07 -52.49 -0.32 2.90 16 33 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 34 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 35 H 0.41 6.20 8.29 -40.82 -0.34 5.86 16 36 H 0.38 2.37 7.44 45.56 0.34 2.71 16 37 H 0.38 1.75 7.83 45.56 0.36 2.11 16 38 H 0.38 2.91 9.05 45.56 0.41 3.32 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.44 7.54 -51.93 -0.39 0.05 16 41 H 0.38 1.64 9.12 45.56 0.42 2.05 16 42 H 0.11 2.76 6.28 -52.48 -0.33 2.43 16 LS Contribution 365.31 15.07 5.51 5.51 Total: -1.00 -33.64 365.31 -6.52 -40.16 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -1.89 Total: 19.96 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -3.25 Total: -9.65 kcal Atomic # 7 Polarization: -31.66 SS G_CDS: 0.55 Total: -31.12 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -2.40 Total: -38.24 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.64 -6.52 -40.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144902435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.333 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds