Wall clock time and date at job start Tue Mar 31 2020 22:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86805 * 119.99906 * 2 1 4 4 H 1.48503 * 109.47020 * 270.00077 * 3 2 1 5 5 H 1.48504 * 109.46760 * 29.99989 * 3 2 1 6 6 H 1.48497 * 109.47047 * 149.99988 * 3 2 1 7 7 C 1.39932 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99671 * 164.58744 * 7 2 1 9 9 C 1.41404 * 120.00019 * 344.58495 * 7 2 1 10 10 C 1.40783 * 120.20908 * 335.37767 * 9 7 2 11 11 C 1.37655 * 119.89915 * 180.02562 * 10 9 7 12 12 C 1.38508 * 120.33181 * 0.02562 * 11 10 9 13 13 C 1.39314 * 120.42238 * 359.97438 * 12 11 10 14 14 N 1.39703 * 119.95685 * 179.97438 * 13 12 11 15 15 C 1.34771 * 119.99914 * 144.31480 * 14 13 12 16 16 O 1.21398 * 120.00189 * 4.51966 * 15 14 13 17 17 C 1.48970 * 120.00129 * 184.53050 * 15 14 13 18 18 O 1.20788 * 120.00020 * 359.97438 * 17 15 14 19 19 C 1.50705 * 120.00415 * 179.97438 * 17 15 14 20 20 H 1.08993 * 109.46547 * 319.99778 * 19 17 15 21 21 O 1.42894 * 109.47085 * 199.99582 * 19 17 15 22 22 C 1.53000 * 109.46998 * 79.99268 * 19 17 15 23 23 H 1.09002 * 109.47545 * 295.00573 * 22 19 17 24 24 O 1.42904 * 109.47179 * 55.00336 * 22 19 17 25 25 C 1.52995 * 109.46793 * 175.00088 * 22 19 17 26 26 H 1.08999 * 109.47446 * 300.00007 * 25 22 19 27 27 O 1.42893 * 109.47397 * 60.00288 * 25 22 19 28 28 C 1.53006 * 109.47260 * 180.02562 * 25 22 19 29 29 O 1.42898 * 109.47618 * 174.99982 * 28 25 22 30 30 C 1.38358 * 120.09190 * 0.25774 * 13 12 11 31 31 H 0.96995 * 120.00354 * 359.97438 * 1 2 3 32 32 H 1.07998 * 120.04739 * 0.03864 * 10 9 7 33 33 H 1.08004 * 119.83659 * 180.02562 * 11 10 9 34 34 H 1.08005 * 119.79030 * 179.97438 * 12 11 10 35 35 H 0.96992 * 119.99800 * 324.58863 * 14 13 12 36 36 H 0.96705 * 114.00255 * 299.99424 * 21 19 17 37 37 H 0.96703 * 113.99669 * 59.99806 * 24 22 19 38 38 H 0.96706 * 113.99893 * 60.00101 * 27 25 22 39 39 H 1.09002 * 109.47263 * 295.00733 * 28 25 22 40 40 H 1.09007 * 109.47123 * 55.00177 * 28 25 22 41 41 H 0.96691 * 114.00218 * 180.02562 * 29 28 25 42 42 H 1.08003 * 120.17155 * 179.74268 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4396 2.6527 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0589 -1.2285 -0.2491 9 6 1.3391 -2.4146 0.3244 10 6 0.1801 -2.3870 1.1232 11 6 -0.4657 -3.5617 1.4361 12 6 0.0192 -4.7723 0.9694 13 6 1.1650 -4.8154 0.1780 14 7 1.6459 -6.0418 -0.2870 15 6 2.2059 -6.1261 -1.5100 16 8 2.3671 -5.1228 -2.1742 17 6 2.6268 -7.4504 -2.0469 18 8 2.4666 -8.4486 -1.3860 19 6 3.2525 -7.5447 -3.4147 20 1 2.7369 -6.8693 -4.0973 21 8 3.1426 -8.8852 -3.8973 22 6 4.7290 -7.1532 -3.3282 23 1 4.8107 -6.1037 -3.0454 24 8 5.3798 -7.9628 -2.3469 25 6 5.3941 -7.3680 -4.6892 26 1 5.3124 -8.4176 -4.9719 27 8 4.7433 -6.5585 -5.6705 28 6 6.8708 -6.9771 -4.6026 29 8 7.5188 -7.2865 -5.8381 30 6 1.8306 -3.6457 -0.1432 31 1 -0.4850 0.8400 0.0004 32 1 -0.2019 -1.4456 1.4896 33 1 -1.3550 -3.5394 2.0485 34 1 -0.4941 -5.6887 1.2205 35 1 1.5732 -6.8334 0.2687 36 1 3.5796 -9.5418 -3.3378 37 1 5.3465 -8.9109 -2.5343 38 1 4.7767 -5.6103 -5.4831 39 1 6.9528 -5.9079 -4.4071 40 1 7.3467 -7.5318 -3.7939 41 1 8.4598 -7.0650 -5.8549 42 1 2.7213 -3.6780 -0.7531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144902435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:25 Heat of formation + Delta-G solvation = -268.954607 kcal Electronic energy + Delta-G solvation = -29550.213063 eV Core-core repulsion = 25073.514684 eV Total energy + Delta-G solvation = -4476.698378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.31870 -40.82314 -39.78152 -38.93643 -37.99940 -36.73078 -36.67942 -36.34504 -34.88928 -31.81746 -31.72001 -30.51792 -29.89710 -27.31068 -26.64455 -24.63307 -22.98950 -22.79086 -22.46739 -21.05106 -19.82715 -19.12981 -19.01712 -18.76983 -18.14008 -17.74761 -17.55546 -17.37310 -16.88414 -16.81009 -16.47653 -16.22625 -15.87182 -15.35980 -15.00990 -14.79903 -14.71098 -14.62522 -14.50891 -14.08637 -14.05126 -13.87380 -13.59066 -13.47751 -13.21199 -13.05446 -12.83047 -12.68502 -12.47105 -12.24328 -11.92300 -11.70246 -11.64847 -11.61342 -11.25788 -11.10207 -10.90260 -10.76623 -10.35884 -9.43100 -8.85862 -8.63339 -6.38340 -0.41095 0.88498 0.98313 1.38337 1.47028 1.49264 1.53906 1.81124 2.21274 2.63396 2.71501 2.89306 3.02027 3.15345 3.37240 3.49668 3.59948 3.70799 3.86616 3.97193 4.17006 4.20414 4.42260 4.42935 4.57271 4.59464 4.88130 4.96721 5.06673 5.08294 5.10170 5.28117 5.42918 5.69310 5.78747 6.03960 6.07263 6.26965 6.30594 6.34550 6.49254 6.64263 6.69843 6.84341 6.84700 6.94138 6.99627 8.32831 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011930 B = 0.003057 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.492422 B = 9156.962355 C =10972.584102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.264 1.264 5 H -0.263 1.263 6 H -0.259 1.259 7 C -0.495 4.495 8 H 0.071 0.929 9 C 0.088 3.912 10 C -0.195 4.195 11 C -0.092 4.092 12 C -0.250 4.250 13 C 0.144 3.856 14 N -0.632 5.632 15 C 0.460 3.540 16 O -0.515 6.515 17 C 0.352 3.648 18 O -0.410 6.410 19 C 0.066 3.934 20 H 0.146 0.854 21 O -0.532 6.532 22 C 0.067 3.933 23 H 0.116 0.884 24 O -0.553 6.553 25 C 0.095 3.905 26 H 0.114 0.886 27 O -0.562 6.562 28 C 0.046 3.954 29 O -0.586 6.586 30 C -0.230 4.230 31 H 0.289 0.711 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.423 0.577 36 H 0.393 0.607 37 H 0.394 0.606 38 H 0.389 0.611 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.398 0.602 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.987 -14.131 -5.188 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.188 1.188 5 H -0.187 1.187 6 H -0.182 1.182 7 C -0.524 4.524 8 H 0.090 0.910 9 C 0.085 3.915 10 C -0.215 4.215 11 C -0.110 4.110 12 C -0.271 4.271 13 C 0.052 3.948 14 N -0.279 5.279 15 C 0.244 3.756 16 O -0.391 6.391 17 C 0.221 3.779 18 O -0.278 6.278 19 C 0.005 3.995 20 H 0.164 0.836 21 O -0.340 6.340 22 C 0.007 3.993 23 H 0.134 0.866 24 O -0.361 6.361 25 C 0.035 3.965 26 H 0.131 0.869 27 O -0.369 6.369 28 C -0.032 4.032 29 O -0.395 6.395 30 C -0.251 4.251 31 H 0.100 0.900 32 H 0.127 0.873 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.261 0.739 36 H 0.244 0.756 37 H 0.245 0.755 38 H 0.238 0.762 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.248 0.752 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.896 -13.810 -5.960 18.005 hybrid contribution 0.802 0.610 0.926 1.368 sum 10.698 -13.200 -5.034 17.721 Atomic orbital electron populations 1.69855 1.08908 1.30589 1.35623 1.26752 0.95573 1.04461 0.91174 0.85191 0.79124 0.75829 0.79486 1.18834 1.18720 1.18246 1.19794 0.97370 0.92206 1.43074 0.91040 1.17852 0.92212 0.92509 0.88939 1.21443 0.99768 0.97601 1.02658 1.20831 0.98908 0.92081 0.99213 1.20487 0.98722 0.98221 1.09677 1.17540 0.94676 0.84176 0.98431 1.43224 1.57063 1.10989 1.16661 1.21436 0.79976 0.91831 0.82350 1.90819 1.52136 1.37685 1.58445 1.25484 0.75329 0.86869 0.90262 1.90404 1.41356 1.37843 1.58234 1.22677 0.97476 0.87596 0.91794 0.83645 1.86772 1.80195 1.14993 1.52021 1.23097 0.88470 0.97906 0.89850 0.86619 1.86716 1.78208 1.23149 1.48034 1.22419 0.89824 0.97702 0.86532 0.86868 1.86637 1.78775 1.22725 1.48776 1.22837 0.93183 1.00278 0.86853 1.86465 1.28878 1.87750 1.36397 1.21052 1.03763 0.92075 1.08209 0.90024 0.87323 0.85919 0.85447 0.73934 0.75607 0.75475 0.76181 0.92545 0.90639 0.75235 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.22 10.82 21.82 0.24 -42.98 16 2 C 0.04 1.79 5.19 85.25 0.44 2.23 16 3 Si 0.98 38.38 29.59 68.60 2.03 40.41 16 4 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 5 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 6 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 7 C -0.50 -27.34 9.06 23.46 0.21 -27.12 16 8 H 0.07 3.85 7.89 -2.91 -0.02 3.83 16 9 C 0.09 4.85 5.58 -21.31 -0.12 4.73 16 10 C -0.19 -10.22 8.69 22.75 0.20 -10.02 16 11 C -0.09 -4.11 10.01 22.20 0.22 -3.89 16 12 C -0.25 -10.41 9.97 22.59 0.23 -10.19 16 13 C 0.14 6.33 6.27 38.17 0.24 6.57 16 14 N -0.63 -22.06 5.31 -305.35 -1.62 -23.68 16 15 C 0.46 15.54 7.69 87.12 0.67 16.21 16 16 O -0.52 -20.79 14.05 -3.40 -0.05 -20.84 16 17 C 0.35 8.83 5.98 28.57 0.17 9.00 16 18 O -0.41 -10.08 16.44 16.76 0.28 -9.81 16 19 C 0.07 1.34 2.73 29.85 0.08 1.42 16 20 H 0.15 3.30 7.70 -2.39 -0.02 3.28 16 21 O -0.53 -9.31 12.24 -126.05 -1.54 -10.85 16 22 C 0.07 1.15 2.65 30.59 0.08 1.23 16 23 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 24 O -0.55 -8.15 12.05 -144.34 -1.74 -9.89 16 25 C 0.10 1.56 2.81 30.59 0.09 1.64 16 26 H 0.11 1.85 7.56 -2.39 -0.02 1.83 16 27 O -0.56 -11.52 12.73 -144.37 -1.84 -13.36 16 28 C 0.05 0.66 6.60 71.98 0.48 1.14 16 29 O -0.59 -9.55 13.62 -144.37 -1.97 -11.52 16 30 C -0.23 -11.75 8.43 22.87 0.19 -11.56 16 31 H 0.29 13.62 8.30 -92.71 -0.77 12.85 16 32 H 0.11 5.92 6.07 -2.91 -0.02 5.90 16 33 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 34 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 35 H 0.42 11.98 8.29 -92.71 -0.77 11.21 16 36 H 0.39 3.79 7.44 -74.05 -0.55 3.24 16 37 H 0.39 2.54 7.83 -74.06 -0.58 1.96 16 38 H 0.39 5.91 9.05 -74.05 -0.67 5.24 16 39 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.08 0.89 7.54 -2.38 -0.02 0.87 16 41 H 0.40 2.84 9.12 -74.06 -0.68 2.16 16 42 H 0.10 5.19 6.28 -2.91 -0.02 5.17 16 Total: -1.00 -73.81 365.31 -5.13 -78.94 By element: Atomic # 1 Polarization: 44.29 SS G_CDS: -2.09 Total: 42.20 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 3.18 Total: -18.61 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: -1.39 Total: -66.67 kcal Atomic # 8 Polarization: -69.41 SS G_CDS: -6.86 Total: -76.26 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -73.81 -5.13 -78.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144902435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.019 kcal (2) G-P(sol) polarization free energy of solvation -73.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -263.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -268.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds