Wall clock time and date at job start Tue Mar 31 2020 22:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 120.00080 * 2 1 4 4 H 1.48500 * 109.47403 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46830 * 300.00225 * 3 2 1 6 6 H 1.48497 * 109.47339 * 59.99763 * 3 2 1 7 7 C 1.38953 * 120.00366 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99978 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99674 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00089 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99524 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00075 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47044 * 179.97438 * 12 10 9 14 14 C 1.46897 * 110.99775 * 180.02562 * 13 12 10 15 15 C 1.53006 * 109.46999 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47242 * 179.97438 * 15 14 13 17 17 C 1.34772 * 120.00214 * 179.97438 * 16 15 14 18 18 O 1.21281 * 119.99940 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00069 * 180.02562 * 17 16 15 20 20 C 1.50706 * 109.47001 * 179.97438 * 19 17 16 21 21 C 1.38241 * 119.98981 * 269.72485 * 20 19 17 22 22 C 1.38210 * 120.01139 * 179.72300 * 21 20 19 23 23 C 1.38349 * 119.98969 * 0.55498 * 22 21 20 24 24 Cl 1.73598 * 120.01695 * 179.70185 * 23 22 21 25 25 C 1.38361 * 119.97127 * 359.71727 * 23 22 21 26 26 C 1.38214 * 119.98666 * 0.02562 * 25 23 22 27 27 H 0.97001 * 120.00063 * 359.97438 * 1 2 3 28 28 H 0.97009 * 120.00041 * 359.97438 * 9 7 2 29 29 H 1.09006 * 109.47235 * 59.99636 * 12 10 9 30 30 H 1.08996 * 109.46935 * 299.99988 * 12 10 9 31 31 H 1.00896 * 110.99852 * 303.95274 * 13 12 10 32 32 H 1.08997 * 109.47661 * 60.00088 * 14 13 12 33 33 H 1.09000 * 109.46973 * 299.99723 * 14 13 12 34 34 H 1.08997 * 109.47040 * 59.99465 * 15 14 13 35 35 H 1.09000 * 109.46833 * 299.99565 * 15 14 13 36 36 H 0.97000 * 119.99972 * 359.97438 * 16 15 14 37 37 H 1.09000 * 109.46978 * 60.00374 * 19 17 16 38 38 H 1.09000 * 109.46976 * 299.99619 * 19 17 16 39 39 H 1.08002 * 119.99152 * 0.02562 * 21 20 19 40 40 H 1.08002 * 120.00562 * 180.27305 * 22 21 20 41 41 H 1.07999 * 120.00328 * 179.97438 * 25 23 22 42 42 H 1.07997 * 119.99198 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2124 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2439 -4.8630 0.0000 13 7 2.1985 -5.9795 -0.0007 14 6 1.4982 -7.2708 -0.0008 15 6 2.5231 -8.4068 -0.0009 16 7 1.8248 -9.6946 -0.0003 17 6 2.5295 -10.8434 -0.0009 18 8 3.7419 -10.8110 -0.0023 19 6 1.8111 -12.1681 -0.0009 20 6 2.8207 -13.2871 -0.0022 21 6 3.2783 -13.8034 -1.2001 22 6 4.2085 -14.8257 -1.2018 23 6 4.6729 -15.3401 -0.0044 24 17 5.8354 -16.6293 -0.0058 25 6 4.2103 -14.8267 1.1942 26 6 3.2841 -13.8008 1.1947 27 1 -0.4850 0.8401 0.0004 28 1 0.3534 -2.3906 0.0002 29 1 0.6168 -4.9209 -0.8897 30 1 0.6176 -4.9205 0.8903 31 1 2.8327 -5.9124 -0.7825 32 1 0.8729 -7.3450 -0.8904 33 1 0.8737 -7.3455 0.8895 34 1 3.1481 -8.3324 0.8890 35 1 3.1479 -8.3323 -0.8909 36 1 0.8551 -9.7205 0.0004 37 1 1.1859 -12.2424 -0.8907 38 1 1.1866 -12.2428 0.8893 39 1 2.9126 -13.4046 -2.1347 40 1 4.5693 -15.2260 -2.1377 41 1 4.5722 -15.2281 2.1292 42 1 2.9226 -13.4002 2.1302 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149588785.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:19 Heat of formation + Delta-G solvation = -85.632332 kcal Electronic energy + Delta-G solvation = -24479.940917 eV Core-core repulsion = 20484.193904 eV Total energy + Delta-G solvation = -3995.747012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.08616 -40.17190 -39.82855 -37.56756 -37.34378 -35.98644 -35.16372 -33.68514 -33.26013 -32.01865 -30.75948 -28.61617 -27.32171 -25.49777 -23.82536 -23.27922 -22.68495 -21.28275 -21.09040 -19.91679 -18.34580 -18.02793 -17.60983 -17.27792 -17.11607 -16.81202 -16.49504 -16.12361 -16.04155 -15.79957 -15.30012 -15.04933 -14.87481 -14.57862 -14.45094 -14.32241 -14.14768 -14.02724 -13.52591 -13.31827 -13.09659 -12.91784 -12.59506 -12.46642 -12.41163 -12.37406 -12.33647 -12.28840 -12.11591 -11.77095 -11.51411 -10.99864 -10.36175 -10.09990 -10.01069 -9.98429 -9.55327 -9.36767 -8.46955 -5.95357 0.12131 0.35147 1.15255 1.36763 1.42589 1.56388 1.68097 2.05101 2.07179 2.30878 2.69568 3.07777 3.20741 3.57678 3.65802 3.80260 3.88843 3.96144 4.09521 4.16082 4.28663 4.32965 4.37119 4.48444 4.52269 4.60752 4.63363 4.65297 4.80425 4.93089 4.98625 5.00490 5.22572 5.26526 5.40889 5.42099 5.53243 5.84931 5.86140 6.08292 6.33287 6.59613 6.60906 7.13234 7.31448 7.56648 8.12469 8.70527 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.039689 B = 0.001279 C = 0.001257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.312645 B =21882.693802 C =22265.337752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.991 3.009 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.434 3.566 11 O -0.626 6.626 12 C 0.069 3.931 13 N -0.688 5.688 14 C 0.059 3.941 15 C 0.128 3.872 16 N -0.714 5.714 17 C 0.509 3.491 18 O -0.584 6.584 19 C -0.094 4.094 20 C -0.072 4.072 21 C -0.102 4.102 22 C -0.121 4.121 23 C -0.050 4.050 24 Cl -0.078 7.078 25 C -0.121 4.121 26 C -0.102 4.102 27 H 0.278 0.722 28 H 0.398 0.602 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.345 0.655 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.420 0.580 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.506 -32.186 -1.001 32.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.210 4.210 3 Si 0.815 3.185 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.222 3.778 11 O -0.513 6.513 12 C -0.063 4.063 13 N -0.321 5.321 14 C -0.070 4.070 15 C 0.003 3.997 16 N -0.367 5.367 17 C 0.297 3.703 18 O -0.464 6.464 19 C -0.133 4.133 20 C -0.072 4.072 21 C -0.120 4.120 22 C -0.139 4.139 23 C -0.077 4.077 24 Cl -0.050 7.050 25 C -0.139 4.139 26 C -0.120 4.120 27 H 0.087 0.913 28 H 0.232 0.768 29 H 0.091 0.909 30 H 0.128 0.872 31 H 0.163 0.837 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.258 0.742 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.165 0.835 40 H 0.161 0.839 41 H 0.160 0.840 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.808 -32.098 -0.320 32.222 hybrid contribution -0.285 0.886 -0.854 1.264 sum -3.093 -31.211 -1.175 31.386 Atomic orbital electron populations 1.69667 1.06730 1.29237 1.50323 1.25993 0.96526 1.02266 0.96234 0.84899 0.78006 0.77245 0.78357 1.19985 1.19540 1.19591 1.19697 0.92687 0.84145 1.49945 0.90505 1.41918 1.09363 1.04637 1.64994 1.20976 0.88278 0.86357 0.82212 1.90506 1.16084 1.88004 1.56685 1.21522 0.93716 0.87465 1.03635 1.59907 1.19453 1.01001 1.51726 1.22082 0.95258 0.86752 1.02941 1.21000 0.94952 0.82226 1.01522 1.45734 1.11298 1.04590 1.75111 1.21169 0.87543 0.86582 0.74995 1.90761 1.16437 1.88288 1.50870 1.20761 0.96988 0.86823 1.08709 1.19692 0.97943 0.96207 0.93391 1.21256 0.96378 0.95521 0.98842 1.21241 0.97858 0.97543 0.97278 1.21130 0.96302 0.94357 0.95909 1.98365 1.58370 1.49235 1.98994 1.21243 0.97911 0.97502 0.97272 1.21260 0.96397 0.95485 0.98883 0.91273 0.76823 0.90876 0.87238 0.83656 0.92365 0.88747 0.92769 0.92940 0.74207 0.84465 0.84502 0.83506 0.83933 0.83959 0.83567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.71 13.05 21.66 0.28 -48.43 16 2 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 3 Si 0.99 42.65 29.55 68.60 2.03 44.68 16 4 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.34 -18.93 9.68 84.04 0.81 -18.12 16 8 H 0.08 4.68 7.16 -2.91 -0.02 4.65 16 9 N -0.57 -28.76 5.29 -306.99 -1.62 -30.38 16 10 C 0.43 20.22 7.82 87.66 0.69 20.91 16 11 O -0.63 -34.74 15.78 -3.06 -0.05 -34.79 16 12 C 0.07 2.17 6.17 85.56 0.53 2.69 16 13 N -0.69 -20.13 6.13 -517.93 -3.17 -23.30 16 14 C 0.06 1.08 5.80 86.31 0.50 1.58 16 15 C 0.13 2.56 5.93 86.38 0.51 3.08 16 16 N -0.71 -9.35 5.56 -463.07 -2.57 -11.93 16 17 C 0.51 8.56 7.82 87.66 0.69 9.24 16 18 O -0.58 -16.57 16.03 -3.03 -0.05 -16.62 16 19 C -0.09 -0.72 5.83 29.10 0.17 -0.55 16 20 C -0.07 -0.97 4.37 -19.86 -0.09 -1.05 16 21 C -0.10 -1.42 9.70 22.26 0.22 -1.20 16 22 C -0.12 -1.86 9.83 22.29 0.22 -1.64 16 23 C -0.05 -0.85 6.32 22.33 0.14 -0.71 16 24 Cl -0.08 -1.28 28.96 -2.72 -0.08 -1.36 16 25 C -0.12 -1.87 9.83 22.29 0.22 -1.65 16 26 C -0.10 -1.44 9.70 22.27 0.22 -1.23 16 27 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 28 H 0.40 18.73 7.90 -92.70 -0.73 18.00 16 29 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 31 H 0.34 10.93 8.43 -89.70 -0.76 10.18 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.42 2.13 8.47 -92.71 -0.79 1.35 16 37 H 0.14 0.24 8.08 -2.39 -0.02 0.22 16 38 H 0.14 0.26 8.09 -2.39 -0.02 0.25 16 39 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 41 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 42 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -78.26 383.49 -1.14 -79.41 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: -1.19 Total: 31.45 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 5.29 Total: 11.27 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -7.09 Total: -114.04 kcal Atomic # 8 Polarization: -51.31 SS G_CDS: -0.10 Total: -51.41 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal Total: -78.26 -1.14 -79.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149588785.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.227 kcal (2) G-P(sol) polarization free energy of solvation -78.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds