Wall clock time and date at job start Tue Mar 31 2020 22:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30721 * 1 3 3 Si 1.86806 * 120.00218 * 2 1 4 4 H 1.48501 * 109.47041 * 239.99656 * 3 2 1 5 5 H 1.48491 * 109.47067 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47063 * 119.99620 * 3 2 1 7 7 C 1.40060 * 120.00295 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00493 * 185.20129 * 7 2 1 9 9 C 1.41280 * 119.99259 * 5.20049 * 7 2 1 10 10 C 1.40717 * 120.15021 * 183.35423 * 9 7 2 11 11 N 1.31909 * 119.92680 * 179.97438 * 10 9 7 12 12 C 1.32164 * 120.26910 * 359.72791 * 11 10 9 13 13 C 1.39913 * 120.31925 * 0.52611 * 12 11 10 14 14 N 1.38833 * 119.96752 * 179.74814 * 13 12 11 15 15 C 1.46976 * 110.99742 * 52.09925 * 14 13 12 16 16 C 1.53690 * 109.29381 * 53.65155 * 15 14 13 17 17 C 1.50039 * 107.78742 * 47.79444 * 16 15 14 18 18 C 1.33923 * 124.88216 * 344.97504 * 17 16 15 19 19 C 1.47175 * 111.00123 * 176.96214 * 14 13 12 20 20 N 1.34929 * 109.97845 * 179.81559 * 18 17 16 21 21 N 1.23640 * 114.63915 * 0.05874 * 20 18 17 22 22 C 1.47655 * 107.81851 * 359.97438 * 21 20 18 23 23 H 1.08994 * 110.95018 * 241.61355 * 22 21 20 24 24 C 1.53002 * 110.78125 * 118.24004 * 22 21 20 25 25 F 1.39895 * 109.47620 * 306.83560 * 24 22 21 26 26 F 1.39897 * 109.47083 * 186.83044 * 24 22 21 27 27 F 1.39906 * 109.46833 * 66.83700 * 24 22 21 28 28 N 1.32262 * 120.06647 * 359.48072 * 13 12 11 29 29 H 0.97003 * 119.99750 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.04141 * 359.95496 * 10 9 7 31 31 H 1.08004 * 119.83716 * 180.25886 * 12 11 10 32 32 H 1.09000 * 109.50481 * 293.70083 * 15 14 13 33 33 H 1.09003 * 109.49871 * 173.59605 * 15 14 13 34 34 H 1.08995 * 109.79498 * 288.21842 * 16 15 14 35 35 H 1.09001 * 109.79534 * 167.36528 * 16 15 14 36 36 H 1.09001 * 109.67781 * 47.29487 * 19 14 13 37 37 H 1.09003 * 109.67220 * 167.79980 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0951 1.6963 -1.2125 5 1 1.2764 2.7464 -0.0006 6 1 3.0950 1.6964 1.2125 7 6 2.0076 -1.2129 0.0005 8 1 3.0842 -1.2148 0.0853 9 6 1.3054 -2.4339 -0.1098 10 6 1.9984 -3.6566 -0.0388 11 7 1.3383 -4.7940 -0.1419 12 6 0.0270 -4.7907 -0.3064 13 6 -0.6722 -3.5813 -0.3837 14 7 -2.0490 -3.5863 -0.5618 15 6 -2.7060 -4.4426 0.4358 16 6 -2.2638 -4.0133 1.8437 17 6 -2.3918 -2.5208 1.9291 18 6 -2.5390 -1.7033 0.8785 19 6 -2.5883 -2.2170 -0.5433 20 7 -2.6284 -0.4242 1.2986 21 7 -2.5570 -0.2781 2.5243 22 6 -2.3919 -1.6146 3.1299 23 1 -3.2260 -1.8484 3.7914 24 6 -1.0626 -1.7095 3.8814 25 9 -0.0180 -1.3318 3.0310 26 9 -0.8622 -3.0260 4.3101 27 9 -1.0922 -0.8574 4.9907 28 7 -0.0234 -2.4332 -0.2821 29 1 -0.4850 0.8401 -0.0004 30 1 3.0694 -3.6638 0.0996 31 1 -0.5070 -5.7262 -0.3858 32 1 -2.4230 -5.4816 0.2665 33 1 -3.7876 -4.3406 0.3472 34 1 -1.2268 -4.3050 2.0100 35 1 -2.9042 -4.4820 2.5908 36 1 -1.9848 -1.5762 -1.1862 37 1 -3.6196 -2.2240 -0.8961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157346730.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:47 Heat of formation + Delta-G solvation = -1.914084 kcal Electronic energy + Delta-G solvation = -32055.761437 eV Core-core repulsion = 27420.680486 eV Total energy + Delta-G solvation = -4635.080951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.100 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.90468 -47.49828 -47.25334 -41.87244 -39.58340 -37.36900 -34.04263 -32.92627 -31.67821 -31.02652 -30.09889 -29.11213 -26.16211 -24.96591 -24.54851 -23.43744 -22.07244 -21.26505 -20.78456 -18.96795 -18.39063 -17.87023 -17.70030 -17.48091 -16.18799 -15.97104 -15.38896 -15.14398 -14.88320 -14.66755 -14.31873 -14.22180 -14.02192 -13.83881 -13.74649 -13.44672 -13.39675 -13.32712 -13.01578 -12.79733 -12.61665 -12.10278 -11.95258 -11.63087 -11.53563 -11.44493 -11.33307 -11.18541 -10.95712 -10.76035 -10.45132 -10.00372 -9.89572 -9.60224 -9.49111 -8.66547 -8.55510 -7.50568 -7.30559 -6.56679 -4.70612 0.52866 2.45092 2.85222 2.91748 3.04726 3.05282 3.07821 3.18344 3.62893 3.81047 3.85542 3.91596 4.19024 4.32990 4.61138 4.69096 4.77663 4.91204 5.07715 5.15401 5.30205 5.48208 5.65257 5.75159 5.77266 5.94548 5.99468 6.08761 6.18105 6.20779 6.35846 6.51607 6.74904 6.93067 7.02299 7.33055 7.38461 7.77761 8.03781 8.42076 8.43103 8.67164 9.23684 9.77014 10.10694 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009620 B = 0.008279 C = 0.006214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2909.921517 B = 3381.260925 C = 4504.834217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.694 5.694 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.404 4.404 8 H 0.087 0.913 9 C 0.230 3.770 10 C -0.086 4.086 11 N -0.415 5.415 12 C -0.132 4.132 13 C 0.278 3.722 14 N -0.469 5.469 15 C 0.065 3.935 16 C -0.089 4.089 17 C -0.150 4.150 18 C 0.020 3.980 19 C 0.136 3.864 20 N -0.099 5.099 21 N -0.164 5.164 22 C -0.074 4.074 23 H 0.167 0.833 24 C 0.492 3.508 25 F -0.145 7.145 26 F -0.178 7.178 27 F -0.177 7.177 28 N -0.476 5.476 29 H 0.281 0.719 30 H 0.129 0.871 31 H 0.123 0.877 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.128 0.872 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.407 -2.152 4.719 9.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.314 5.314 2 C -0.156 4.156 3 Si 0.729 3.271 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.435 4.435 8 H 0.105 0.895 9 C 0.103 3.897 10 C -0.257 4.257 11 N -0.127 5.127 12 C -0.293 4.293 13 C 0.036 3.964 14 N -0.186 5.186 15 C -0.062 4.062 16 C -0.128 4.128 17 C -0.164 4.164 18 C -0.087 4.087 19 C 0.007 3.993 20 N 0.012 4.988 21 N -0.058 5.058 22 C -0.185 4.185 23 H 0.184 0.816 24 C 0.435 3.565 25 F -0.126 7.126 26 F -0.160 7.160 27 F -0.158 7.158 28 N -0.198 5.198 29 H 0.093 0.907 30 H 0.147 0.853 31 H 0.141 0.859 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.146 0.854 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.853 -0.945 4.221 9.853 hybrid contribution 0.996 -0.238 1.175 1.559 sum -7.857 -1.183 5.395 9.604 Atomic orbital electron populations 1.69899 1.06961 1.28941 1.25568 1.25994 0.95043 1.00932 0.93662 0.86407 0.80252 0.80579 0.79908 1.18883 1.19926 1.18980 1.19572 0.94729 0.89236 1.40013 0.89521 1.19090 0.88069 0.93189 0.89324 1.23011 0.99357 0.89079 1.14212 1.67596 1.08033 1.30654 1.06391 1.21951 0.90990 0.95532 1.20801 1.20677 0.89235 0.92546 0.93931 1.59415 1.02797 1.10767 1.45600 1.22352 0.98741 0.98068 0.87064 1.20868 1.03860 0.88260 0.99854 1.23422 1.02230 0.97935 0.92814 1.23128 0.98173 0.88469 0.98965 1.20755 1.00293 0.88347 0.89910 1.72196 0.99033 1.20213 1.07376 1.79001 1.10098 1.14890 1.01847 1.24445 0.97587 0.96040 1.00458 0.81629 1.19148 0.85944 0.73836 0.77530 1.93434 1.59089 1.90722 1.69314 1.93191 1.95736 1.36603 1.90426 1.93196 1.96776 1.71034 1.54835 1.69381 1.08655 1.22651 1.19078 0.90708 0.85340 0.85918 0.88788 0.89901 0.88750 0.89503 0.85398 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.30 10.53 55.55 0.59 -15.71 16 2 C 0.07 1.69 5.49 -17.34 -0.10 1.60 16 3 Si 0.90 18.10 29.56 -169.99 -5.03 13.08 16 4 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.40 -10.01 9.15 -37.74 -0.35 -10.36 16 8 H 0.09 2.04 7.85 -52.49 -0.41 1.63 16 9 C 0.23 5.83 6.54 -84.83 -0.55 5.28 16 10 C -0.09 -2.12 10.97 -16.58 -0.18 -2.30 16 11 N -0.42 -9.96 10.47 -12.11 -0.13 -10.09 16 12 C -0.13 -2.91 9.82 -16.78 -0.16 -3.08 16 13 C 0.28 5.99 4.83 -155.01 -0.75 5.24 16 14 N -0.47 -8.26 4.98 -173.36 -0.86 -9.13 16 15 C 0.07 0.90 5.58 -3.42 -0.02 0.88 16 16 C -0.09 -1.31 5.18 -27.84 -0.14 -1.46 16 17 C -0.15 -2.49 5.16 -101.31 -0.52 -3.01 16 18 C 0.02 0.35 5.72 -82.47 -0.47 -0.12 16 19 C 0.14 2.35 5.82 -4.55 -0.03 2.33 16 20 N -0.10 -1.85 11.27 33.37 0.38 -1.47 16 21 N -0.16 -2.96 12.41 -5.33 -0.07 -3.03 16 22 C -0.07 -1.19 3.76 -68.58 -0.26 -1.44 16 23 H 0.17 2.07 8.14 -51.93 -0.42 1.65 16 24 C 0.49 8.76 2.91 37.16 0.11 8.87 16 25 F -0.14 -3.22 16.91 2.25 0.04 -3.18 16 26 F -0.18 -3.03 16.50 2.25 0.04 -2.99 16 27 F -0.18 -2.99 17.32 2.25 0.04 -2.95 16 28 N -0.48 -11.38 5.58 -10.14 -0.06 -11.44 16 29 H 0.28 6.38 8.29 -40.82 -0.34 6.04 16 30 H 0.13 2.94 8.06 -52.49 -0.42 2.52 16 31 H 0.12 2.40 7.04 -52.48 -0.37 2.03 16 32 H 0.09 1.19 6.99 -51.93 -0.36 0.83 16 33 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 34 H 0.09 1.71 7.05 -51.93 -0.37 1.34 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.13 2.61 7.36 -51.93 -0.38 2.23 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 322.91 15.07 4.87 4.87 Total: -1.00 -27.57 322.91 -6.76 -34.33 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -3.14 Total: 5.30 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -3.42 Total: 2.41 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.15 Total: -50.87 kcal Atomic # 9 Polarization: -9.24 SS G_CDS: 0.11 Total: -9.12 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.08 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.57 -6.76 -34.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157346730.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.418 kcal (2) G-P(sol) polarization free energy of solvation -27.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds