Wall clock time and date at job start Tue Mar 31 2020 22:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30721 * 1 3 3 Si 1.86806 * 120.00218 * 2 1 4 4 H 1.48501 * 109.47041 * 239.99656 * 3 2 1 5 5 H 1.48491 * 109.47067 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47063 * 119.99620 * 3 2 1 7 7 C 1.40060 * 120.00295 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00493 * 185.20129 * 7 2 1 9 9 C 1.41280 * 119.99259 * 5.20049 * 7 2 1 10 10 C 1.40717 * 120.15021 * 183.35423 * 9 7 2 11 11 N 1.31909 * 119.92680 * 179.97438 * 10 9 7 12 12 C 1.32164 * 120.26910 * 359.72791 * 11 10 9 13 13 C 1.39913 * 120.31925 * 0.52611 * 12 11 10 14 14 N 1.38833 * 119.96752 * 179.74814 * 13 12 11 15 15 C 1.46976 * 110.99742 * 52.09925 * 14 13 12 16 16 C 1.53690 * 109.29381 * 53.65155 * 15 14 13 17 17 C 1.50039 * 107.78742 * 47.79444 * 16 15 14 18 18 C 1.33923 * 124.88216 * 344.97504 * 17 16 15 19 19 C 1.47175 * 111.00123 * 176.96214 * 14 13 12 20 20 N 1.34929 * 109.97845 * 179.81559 * 18 17 16 21 21 N 1.23640 * 114.63915 * 0.05874 * 20 18 17 22 22 C 1.47655 * 107.81851 * 359.97438 * 21 20 18 23 23 H 1.08994 * 110.95018 * 241.61355 * 22 21 20 24 24 C 1.53002 * 110.78125 * 118.24004 * 22 21 20 25 25 F 1.39895 * 109.47620 * 306.83560 * 24 22 21 26 26 F 1.39897 * 109.47083 * 186.83044 * 24 22 21 27 27 F 1.39906 * 109.46833 * 66.83700 * 24 22 21 28 28 N 1.32262 * 120.06647 * 359.48072 * 13 12 11 29 29 H 0.97003 * 119.99750 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.04141 * 359.95496 * 10 9 7 31 31 H 1.08004 * 119.83716 * 180.25886 * 12 11 10 32 32 H 1.09000 * 109.50481 * 293.70083 * 15 14 13 33 33 H 1.09003 * 109.49871 * 173.59605 * 15 14 13 34 34 H 1.08995 * 109.79498 * 288.21842 * 16 15 14 35 35 H 1.09001 * 109.79534 * 167.36528 * 16 15 14 36 36 H 1.09001 * 109.67781 * 47.29487 * 19 14 13 37 37 H 1.09003 * 109.67220 * 167.79980 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0951 1.6963 -1.2125 5 1 1.2764 2.7464 -0.0006 6 1 3.0950 1.6964 1.2125 7 6 2.0076 -1.2129 0.0005 8 1 3.0842 -1.2148 0.0853 9 6 1.3054 -2.4339 -0.1098 10 6 1.9984 -3.6566 -0.0388 11 7 1.3383 -4.7940 -0.1419 12 6 0.0270 -4.7907 -0.3064 13 6 -0.6722 -3.5813 -0.3837 14 7 -2.0490 -3.5863 -0.5618 15 6 -2.7060 -4.4426 0.4358 16 6 -2.2638 -4.0133 1.8437 17 6 -2.3918 -2.5208 1.9291 18 6 -2.5390 -1.7033 0.8785 19 6 -2.5883 -2.2170 -0.5433 20 7 -2.6284 -0.4242 1.2986 21 7 -2.5570 -0.2781 2.5243 22 6 -2.3919 -1.6146 3.1299 23 1 -3.2260 -1.8484 3.7914 24 6 -1.0626 -1.7095 3.8814 25 9 -0.0180 -1.3318 3.0310 26 9 -0.8622 -3.0260 4.3101 27 9 -1.0922 -0.8574 4.9907 28 7 -0.0234 -2.4332 -0.2821 29 1 -0.4850 0.8401 -0.0004 30 1 3.0694 -3.6638 0.0996 31 1 -0.5070 -5.7262 -0.3858 32 1 -2.4230 -5.4816 0.2665 33 1 -3.7876 -4.3406 0.3472 34 1 -1.2268 -4.3050 2.0100 35 1 -2.9042 -4.4820 2.5908 36 1 -1.9848 -1.5762 -1.1862 37 1 -3.6196 -2.2240 -0.8961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157346730.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:46 Heat of formation + Delta-G solvation = -20.819586 kcal Electronic energy + Delta-G solvation = -32056.581241 eV Core-core repulsion = 27420.680486 eV Total energy + Delta-G solvation = -4635.900755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.100 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.34198 -48.87904 -48.79355 -43.20644 -41.19177 -38.88573 -35.83154 -34.33266 -33.34032 -32.47386 -31.44458 -30.69899 -27.89549 -26.33715 -26.05271 -24.77151 -23.79954 -22.69859 -22.25609 -20.38239 -19.82262 -19.41629 -19.19876 -18.97261 -17.81238 -17.37284 -16.97955 -16.77961 -16.46886 -16.11194 -15.71532 -15.62778 -15.41193 -15.25429 -15.16285 -14.94825 -14.91887 -14.91518 -14.46098 -14.23038 -13.99581 -13.52170 -13.38350 -13.24981 -13.15607 -12.97028 -12.74575 -12.67875 -12.42866 -12.18048 -12.05311 -11.65697 -11.34930 -11.27774 -11.20952 -10.24145 -9.97620 -9.28493 -8.94749 -8.33212 -6.55384 -0.79559 0.71143 1.18365 1.38655 1.46999 1.49394 1.51236 1.72301 2.18272 2.30996 2.48603 2.58356 2.72921 2.91368 2.98599 3.31342 3.49591 3.68909 3.81906 3.91152 3.97022 4.17152 4.18141 4.28866 4.36436 4.48442 4.59874 4.75607 4.82112 4.89048 4.95196 5.03102 5.14374 5.19280 5.32729 5.67448 5.82381 6.09837 6.24185 6.63242 6.86700 7.08921 7.42994 7.97974 8.32937 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009620 B = 0.008279 C = 0.006214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2909.921517 B = 3381.260925 C = 4504.834217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.700 5.700 2 C 0.038 3.962 3 Si 0.964 3.036 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.432 4.432 8 H 0.086 0.914 9 C 0.208 3.792 10 C -0.122 4.122 11 N -0.426 5.426 12 C -0.133 4.133 13 C 0.281 3.719 14 N -0.467 5.467 15 C 0.063 3.937 16 C -0.087 4.087 17 C -0.142 4.142 18 C 0.002 3.998 19 C 0.140 3.860 20 N -0.115 5.115 21 N -0.180 5.180 22 C -0.070 4.070 23 H 0.207 0.793 24 C 0.490 3.510 25 F -0.176 7.176 26 F -0.173 7.173 27 F -0.172 7.172 28 N -0.485 5.485 29 H 0.281 0.719 30 H 0.130 0.870 31 H 0.151 0.849 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.061 0.939 35 H 0.129 0.871 36 H 0.092 0.908 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.659 -2.849 5.205 12.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.319 5.319 2 C -0.189 4.189 3 Si 0.786 3.214 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.463 4.463 8 H 0.104 0.896 9 C 0.082 3.918 10 C -0.290 4.290 11 N -0.138 5.138 12 C -0.295 4.295 13 C 0.038 3.962 14 N -0.183 5.183 15 C -0.063 4.063 16 C -0.126 4.126 17 C -0.156 4.156 18 C -0.105 4.105 19 C 0.011 3.989 20 N -0.003 5.003 21 N -0.073 5.073 22 C -0.182 4.182 23 H 0.224 0.776 24 C 0.434 3.566 25 F -0.157 7.157 26 F -0.155 7.155 27 F -0.154 7.154 28 N -0.207 5.207 29 H 0.092 0.908 30 H 0.148 0.852 31 H 0.168 0.832 32 H 0.128 0.872 33 H 0.140 0.860 34 H 0.080 0.920 35 H 0.146 0.854 36 H 0.111 0.889 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.093 -1.639 4.710 12.163 hybrid contribution 1.582 -0.140 1.052 1.905 sum -9.512 -1.779 5.762 11.262 Atomic orbital electron populations 1.69978 1.07570 1.29277 1.25076 1.26591 0.95864 1.03077 0.93413 0.85500 0.79066 0.77133 0.79668 1.18416 1.19400 1.19325 1.19789 0.94976 0.90109 1.41463 0.89628 1.19367 0.89054 0.93620 0.89760 1.23032 0.99702 0.89382 1.16856 1.67576 1.09150 1.30492 1.06574 1.22449 0.90590 0.96933 1.19510 1.21032 0.91142 0.91782 0.92226 1.59418 1.00649 1.11511 1.46770 1.22630 1.00574 0.97872 0.85221 1.20957 1.02727 0.87155 1.01798 1.23731 1.00491 0.98879 0.92547 1.23190 0.99502 0.88461 0.99382 1.20716 1.01432 0.87471 0.89285 1.72163 0.99496 1.20968 1.07714 1.78933 1.10528 1.16058 1.01830 1.24588 0.97626 0.95172 1.00781 0.77637 1.19365 0.85828 0.73948 0.77473 1.93375 1.60825 1.91098 1.70445 1.93197 1.95751 1.36177 1.90339 1.93202 1.96723 1.70944 1.54498 1.69414 1.08073 1.23858 1.19364 0.90832 0.85244 0.83180 0.87167 0.85995 0.92043 0.85352 0.88933 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -33.37 10.53 21.84 0.23 -33.14 16 2 C 0.04 1.79 5.49 85.30 0.47 2.26 16 3 Si 0.96 37.71 29.56 68.60 2.03 39.74 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.43 -22.16 9.15 23.46 0.21 -21.95 16 8 H 0.09 4.21 7.85 -2.91 -0.02 4.19 16 9 C 0.21 10.89 6.54 40.17 0.26 11.15 16 10 C -0.12 -6.19 10.97 85.29 0.94 -5.26 16 11 N -0.43 -20.58 10.47 -192.23 -2.01 -22.59 16 12 C -0.13 -5.71 9.82 85.05 0.83 -4.87 16 13 C 0.28 11.90 4.83 133.35 0.64 12.54 16 14 N -0.47 -15.31 4.98 -702.39 -3.50 -18.81 16 15 C 0.06 1.47 5.58 86.52 0.48 1.96 16 16 C -0.09 -2.28 5.18 29.87 0.15 -2.12 16 17 C -0.14 -4.38 5.16 -17.72 -0.09 -4.47 16 18 C 0.00 0.07 5.72 41.28 0.24 0.31 16 19 C 0.14 4.59 5.82 85.68 0.50 5.09 16 20 N -0.11 -4.18 11.27 -48.34 -0.54 -4.73 16 21 N -0.18 -6.28 12.41 -170.77 -2.12 -8.40 16 22 C -0.07 -2.11 3.76 43.94 0.17 -1.94 16 23 H 0.21 4.36 8.14 -2.39 -0.02 4.34 16 24 C 0.49 16.93 2.91 71.98 0.21 17.14 16 25 F -0.18 -7.92 16.91 44.97 0.76 -7.16 16 26 F -0.17 -5.64 16.50 44.97 0.74 -4.90 16 27 F -0.17 -5.63 17.32 44.97 0.78 -4.85 16 28 N -0.48 -23.43 5.58 -186.00 -1.04 -24.47 16 29 H 0.28 12.89 8.29 -92.71 -0.77 12.12 16 30 H 0.13 6.26 8.06 -2.91 -0.02 6.23 16 31 H 0.15 5.48 7.04 -2.91 -0.02 5.46 16 32 H 0.11 2.28 6.99 -2.39 -0.02 2.26 16 33 H 0.12 2.01 8.08 -2.39 -0.02 1.99 16 34 H 0.06 2.10 7.05 -2.39 -0.02 2.08 16 35 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.09 3.77 7.36 -2.39 -0.02 3.75 16 37 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -61.78 322.91 1.50 -60.28 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 1.16 Total: 19.21 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 5.02 Total: 9.83 kcal Atomic # 7 Polarization: -103.16 SS G_CDS: -8.98 Total: -112.14 kcal Atomic # 9 Polarization: -19.19 SS G_CDS: 2.28 Total: -16.91 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.74 kcal Total: -61.78 1.50 -60.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157346730.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.456 kcal (2) G-P(sol) polarization free energy of solvation -61.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds