Wall clock time and date at job start Tue Mar 31 2020 22:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29490 * 1 3 3 Si 1.86800 * 119.99980 * 2 1 4 4 H 1.48497 * 109.47137 * 269.99983 * 3 2 1 5 5 H 1.48493 * 109.47103 * 30.00354 * 3 2 1 6 6 H 1.48504 * 109.47070 * 150.00350 * 3 2 1 7 7 C 1.46590 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00082 * 170.42787 * 7 2 1 9 9 C 1.39519 * 120.00209 * 350.42450 * 7 2 1 10 10 C 1.41749 * 120.17951 * 322.47338 * 9 7 2 11 11 C 1.35801 * 119.79953 * 180.02562 * 10 9 7 12 12 C 1.40183 * 120.19134 * 0.02562 * 11 10 9 13 13 N 1.37662 * 119.81045 * 179.97438 * 12 11 10 14 14 C 1.46496 * 120.00035 * 0.02562 * 13 12 11 15 15 C 1.50699 * 109.47057 * 180.02562 * 14 13 12 16 16 C 1.35005 * 125.69014 * 94.99720 * 15 14 13 17 17 N 1.36840 * 107.09924 * 179.97438 * 16 15 14 18 18 C 1.36448 * 132.73548 * 180.02562 * 17 16 15 19 19 C 1.35582 * 119.07653 * 179.97438 * 18 17 16 20 20 C 1.40206 * 119.32325 * 0.03131 * 19 18 17 21 21 N 1.31219 * 120.37835 * 359.97438 * 20 19 18 22 22 C 1.34086 * 120.92280 * 359.97438 * 21 20 19 23 23 N 1.32526 * 131.94427 * 180.02562 * 22 21 20 24 24 C 1.40139 * 120.37842 * 0.25917 * 12 11 10 25 25 C 1.35842 * 120.19049 * 359.43556 * 24 12 11 26 26 N 1.48009 * 120.09787 * 180.28033 * 25 24 12 27 27 O 1.31704 * 120.00001 * 353.89121 * 26 25 24 28 28 O 1.31698 * 120.00141 * 173.89938 * 26 25 24 29 29 H 0.97001 * 120.00206 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.10369 * 359.97438 * 10 9 7 31 31 H 1.08006 * 119.90514 * 179.97438 * 11 10 9 32 32 H 0.97003 * 119.99777 * 180.02562 * 13 12 11 33 33 H 1.08996 * 109.47291 * 60.00052 * 14 13 12 34 34 H 1.09000 * 109.47124 * 299.99644 * 14 13 12 35 35 H 1.08007 * 126.44778 * 359.96413 * 16 15 14 36 36 H 1.08005 * 120.46249 * 359.97438 * 18 17 16 37 37 H 1.08000 * 120.33418 * 180.02562 * 19 18 17 38 38 H 1.07996 * 119.80563 * 180.25789 * 20 19 18 39 39 H 1.08001 * 119.90920 * 179.72459 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2289 1.6177 0.0000 4 1 2.4764 2.0464 -1.4000 5 1 1.4264 2.6526 0.7001 6 1 3.5265 1.4401 0.7000 7 6 2.0278 -1.2695 -0.0006 8 1 3.0966 -1.2760 -0.1561 9 6 1.3448 -2.4695 0.1999 10 6 0.2677 -2.5313 1.1193 11 6 -0.3914 -3.7035 1.3088 12 6 -0.0090 -4.8500 0.5987 13 7 -0.6823 -6.0342 0.7973 14 6 -1.7952 -6.0936 1.7481 15 6 -2.3556 -7.4922 1.7788 16 6 -2.0160 -8.4576 2.6593 17 7 -2.7504 -9.5678 2.3422 18 6 -2.8184 -10.8186 2.8832 19 6 -3.6629 -11.7278 2.3368 20 6 -4.4437 -11.3621 1.2312 21 7 -4.3590 -10.1523 0.7300 22 6 -3.5289 -9.2430 1.2611 23 7 -3.2722 -7.9833 0.9395 24 6 1.0585 -4.7991 -0.3078 25 6 1.7245 -3.6333 -0.5139 26 7 2.8477 -3.5803 -1.4764 27 8 3.2810 -4.6868 -2.0443 28 8 3.4139 -2.4268 -1.7649 29 1 -0.4850 0.8400 0.0004 30 1 -0.0273 -1.6492 1.6682 31 1 -1.2120 -3.7526 2.0093 32 1 -0.4198 -6.8294 0.3076 33 1 -2.5742 -5.3964 1.4396 34 1 -1.4387 -5.8236 2.7421 35 1 -1.2994 -8.3701 3.4627 36 1 -2.2081 -11.0808 3.7348 37 1 -3.7332 -12.7235 2.7490 38 1 -5.1220 -12.0788 0.7924 39 1 1.3495 -5.6881 -0.8476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161904511.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:41 Heat of formation + Delta-G solvation = 156.291581 kcal Electronic energy + Delta-G solvation = -27112.261449 eV Core-core repulsion = 23025.897551 eV Total energy + Delta-G solvation = -4086.363898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.33733 -38.97451 -38.51596 -36.64605 -35.41302 -34.86597 -33.75814 -32.34358 -31.57100 -30.31685 -30.21816 -29.10598 -27.07533 -25.27200 -24.10624 -23.92508 -23.66191 -21.64372 -21.06082 -19.92974 -18.56660 -18.14837 -18.01212 -17.07767 -16.67489 -16.47720 -16.20450 -15.67716 -15.25237 -14.87444 -14.79607 -14.64653 -14.10744 -14.03484 -13.71666 -13.29149 -13.16204 -12.99952 -12.79917 -12.64108 -12.31217 -12.15885 -11.82974 -11.49827 -11.39871 -11.05193 -10.75405 -10.50992 -10.33844 -10.12248 -9.88261 -9.45960 -9.31266 -9.21470 -8.91696 -8.75649 -8.49716 -8.23711 -7.57344 -6.88110 -4.69235 0.12223 0.66157 1.08998 2.00813 2.29798 2.48672 2.81369 2.86775 2.90896 2.98113 3.18707 3.23589 3.33299 3.55322 3.85157 3.98293 4.03959 4.25211 4.31997 4.59579 4.74878 4.88894 4.99302 5.10855 5.20946 5.52336 5.70238 5.74440 5.84331 5.85731 6.15703 6.25032 6.26662 6.37409 6.47648 6.80749 6.84466 7.09935 7.19104 7.33397 7.42391 7.62548 7.65749 7.95330 8.01885 8.12928 8.24663 8.45930 8.98170 9.33637 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020717 B = 0.002248 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.252491 B =12449.813948 C =13306.036197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.721 5.721 2 C 0.058 3.942 3 Si 0.936 3.064 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.248 1.248 7 C -0.328 4.328 8 H 0.124 0.876 9 C 0.078 3.922 10 C -0.085 4.085 11 C -0.136 4.136 12 C 0.125 3.875 13 N -0.743 5.743 14 C 0.215 3.785 15 C 0.068 3.932 16 C -0.074 4.074 17 N -0.401 5.401 18 C 0.113 3.887 19 C -0.209 4.209 20 C 0.167 3.833 21 N -0.434 5.434 22 C 0.374 3.626 23 N -0.453 5.453 24 C -0.131 4.131 25 C -0.061 4.061 26 N 0.038 4.962 27 O -0.369 6.369 28 O -0.290 6.290 29 H 0.303 0.697 30 H 0.127 0.873 31 H 0.110 0.890 32 H 0.393 0.607 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.191 0.809 36 H 0.175 0.825 37 H 0.165 0.835 38 H 0.182 0.818 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.279 -15.343 13.835 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.343 5.343 2 C -0.172 4.172 3 Si 0.757 3.243 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.171 1.171 7 C -0.357 4.357 8 H 0.141 0.859 9 C 0.073 3.927 10 C -0.105 4.105 11 C -0.158 4.158 12 C 0.024 3.976 13 N -0.379 5.379 14 C 0.089 3.911 15 C -0.065 4.065 16 C -0.206 4.206 17 N -0.078 5.078 18 C -0.020 4.020 19 C -0.232 4.232 20 C -0.021 4.021 21 N -0.145 5.145 22 C 0.026 3.974 23 N -0.175 5.175 24 C -0.156 4.156 25 C -0.165 4.165 26 N 0.451 4.549 27 O -0.508 6.508 28 O -0.447 6.447 29 H 0.116 0.884 30 H 0.145 0.855 31 H 0.128 0.872 32 H 0.227 0.773 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.208 0.792 36 H 0.192 0.808 37 H 0.182 0.818 38 H 0.199 0.801 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.502 -14.354 12.677 22.870 hybrid contribution 1.318 -0.610 0.827 1.671 sum -11.185 -14.965 13.504 23.052 Atomic orbital electron populations 1.69056 1.09158 1.32479 1.23575 1.27936 0.94912 1.03170 0.91211 0.85799 0.80665 0.77054 0.80734 1.17989 1.19435 1.17112 1.21963 0.97684 0.88658 1.27376 0.85864 1.17239 0.92819 0.91355 0.91313 1.20976 0.95829 0.96415 0.97284 1.20426 1.01003 0.92617 1.01717 1.17010 0.94813 0.86366 0.99461 1.43491 1.36053 1.09984 1.48335 1.19380 0.89284 0.88330 0.94106 1.21043 0.95685 0.97059 0.92735 1.22554 1.04878 0.85627 1.07566 1.44010 1.29597 1.09949 1.24266 1.22213 0.98726 0.82430 0.98595 1.21820 0.99668 1.01659 1.00080 1.23327 0.95423 0.91716 0.91608 1.67895 1.16839 1.01595 1.28148 1.22003 0.94506 0.93441 0.87476 1.70684 1.17232 1.03537 1.26001 1.19293 0.97443 0.97150 1.01748 1.19391 0.97217 0.97738 1.02118 1.49610 1.02270 1.00993 1.01990 1.96049 1.72670 1.20195 1.61868 1.96026 1.61671 1.12956 1.74021 0.88405 0.85514 0.87182 0.77323 0.90795 0.90865 0.79190 0.80793 0.81777 0.80066 0.86649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -15.42 11.55 55.99 0.65 -14.77 16 2 C 0.06 1.26 5.39 -15.17 -0.08 1.18 16 3 Si 0.94 16.40 29.65 -169.99 -5.04 11.36 16 4 H -0.26 -4.63 7.11 56.52 0.40 -4.22 16 5 H -0.27 -4.36 7.11 56.52 0.40 -3.96 16 6 H -0.25 -4.35 7.11 56.52 0.40 -3.95 16 7 C -0.33 -8.08 7.70 -35.74 -0.28 -8.35 16 8 H 0.12 3.18 6.05 -52.48 -0.32 2.86 16 9 C 0.08 1.95 5.48 -106.75 -0.58 1.37 16 10 C -0.09 -1.84 8.62 -39.11 -0.34 -2.17 16 11 C -0.14 -2.62 9.21 -39.72 -0.37 -2.99 16 12 C 0.13 2.49 6.67 -83.80 -0.56 1.93 16 13 N -0.74 -12.17 5.65 -59.67 -0.34 -12.51 16 14 C 0.21 2.88 5.40 -5.20 -0.03 2.85 16 15 C 0.07 0.90 6.43 -82.96 -0.53 0.37 16 16 C -0.07 -0.76 11.67 -16.47 -0.19 -0.95 16 17 N -0.40 -4.06 2.95 -64.40 -0.19 -4.24 16 18 C 0.11 0.64 11.07 -16.45 -0.18 0.46 16 19 C -0.21 -0.88 10.06 -39.79 -0.40 -1.28 16 20 C 0.17 1.10 11.27 -17.07 -0.19 0.91 16 21 N -0.43 -5.24 10.48 -13.70 -0.14 -5.39 16 22 C 0.37 5.13 8.92 -322.52 -2.88 2.25 16 23 N -0.45 -7.20 11.31 -10.66 -0.12 -7.32 16 24 C -0.13 -3.07 9.35 -39.73 -0.37 -3.44 16 25 C -0.06 -1.61 6.89 -79.49 -0.55 -2.16 16 26 N 0.04 1.13 4.98 34.19 0.17 1.30 16 27 O -0.37 -11.15 19.14 -31.57 -0.60 -11.75 16 28 O -0.29 -8.67 16.32 -31.57 -0.52 -9.18 16 29 H 0.30 5.63 8.27 -40.82 -0.34 5.29 16 30 H 0.13 2.61 6.92 -52.48 -0.36 2.24 16 31 H 0.11 1.75 6.66 -52.48 -0.35 1.40 16 32 H 0.39 6.39 8.45 -40.82 -0.34 6.05 16 33 H 0.07 1.06 7.91 -51.93 -0.41 0.65 16 34 H 0.07 0.82 7.91 -51.93 -0.41 0.41 16 35 H 0.19 1.27 8.06 -52.48 -0.42 0.85 16 36 H 0.17 0.31 8.06 -52.48 -0.42 -0.11 16 37 H 0.16 0.02 8.06 -52.49 -0.42 -0.40 16 38 H 0.18 0.47 8.06 -52.49 -0.42 0.05 16 39 H 0.12 2.71 7.55 -52.49 -0.40 2.31 16 LS Contribution 349.40 15.07 5.27 5.27 Total: -1.00 -35.99 349.40 -11.81 -47.80 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -3.42 Total: 9.46 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -7.53 Total: -10.02 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.03 Total: -42.93 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -1.12 Total: -20.94 kcal Atomic # 14 Polarization: 16.40 SS G_CDS: -5.04 Total: 11.36 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.99 -11.81 -47.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161904511.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.096 kcal (2) G-P(sol) polarization free energy of solvation -35.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds