Wall clock time and date at job start Tue Mar 31 2020 22:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29490 * 1 3 3 Si 1.86800 * 119.99980 * 2 1 4 4 H 1.48497 * 109.47137 * 269.99983 * 3 2 1 5 5 H 1.48493 * 109.47103 * 30.00354 * 3 2 1 6 6 H 1.48504 * 109.47070 * 150.00350 * 3 2 1 7 7 C 1.46590 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00082 * 170.42787 * 7 2 1 9 9 C 1.39519 * 120.00209 * 350.42450 * 7 2 1 10 10 C 1.41749 * 120.17951 * 322.47338 * 9 7 2 11 11 C 1.35801 * 119.79953 * 180.02562 * 10 9 7 12 12 C 1.40183 * 120.19134 * 0.02562 * 11 10 9 13 13 N 1.37662 * 119.81045 * 179.97438 * 12 11 10 14 14 C 1.46496 * 120.00035 * 0.02562 * 13 12 11 15 15 C 1.50699 * 109.47057 * 180.02562 * 14 13 12 16 16 C 1.35005 * 125.69014 * 94.99720 * 15 14 13 17 17 N 1.36840 * 107.09924 * 179.97438 * 16 15 14 18 18 C 1.36448 * 132.73548 * 180.02562 * 17 16 15 19 19 C 1.35582 * 119.07653 * 179.97438 * 18 17 16 20 20 C 1.40206 * 119.32325 * 0.03131 * 19 18 17 21 21 N 1.31219 * 120.37835 * 359.97438 * 20 19 18 22 22 C 1.34086 * 120.92280 * 359.97438 * 21 20 19 23 23 N 1.32526 * 131.94427 * 180.02562 * 22 21 20 24 24 C 1.40139 * 120.37842 * 0.25917 * 12 11 10 25 25 C 1.35842 * 120.19049 * 359.43556 * 24 12 11 26 26 N 1.48009 * 120.09787 * 180.28033 * 25 24 12 27 27 O 1.31704 * 120.00001 * 353.89121 * 26 25 24 28 28 O 1.31698 * 120.00141 * 173.89938 * 26 25 24 29 29 H 0.97001 * 120.00206 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.10369 * 359.97438 * 10 9 7 31 31 H 1.08006 * 119.90514 * 179.97438 * 11 10 9 32 32 H 0.97003 * 119.99777 * 180.02562 * 13 12 11 33 33 H 1.08996 * 109.47291 * 60.00052 * 14 13 12 34 34 H 1.09000 * 109.47124 * 299.99644 * 14 13 12 35 35 H 1.08007 * 126.44778 * 359.96413 * 16 15 14 36 36 H 1.08005 * 120.46249 * 359.97438 * 18 17 16 37 37 H 1.08000 * 120.33418 * 180.02562 * 19 18 17 38 38 H 1.07996 * 119.80563 * 180.25789 * 20 19 18 39 39 H 1.08001 * 119.90920 * 179.72459 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2289 1.6177 0.0000 4 1 2.4764 2.0464 -1.4000 5 1 1.4264 2.6526 0.7001 6 1 3.5265 1.4401 0.7000 7 6 2.0278 -1.2695 -0.0006 8 1 3.0966 -1.2760 -0.1561 9 6 1.3448 -2.4695 0.1999 10 6 0.2677 -2.5313 1.1193 11 6 -0.3914 -3.7035 1.3088 12 6 -0.0090 -4.8500 0.5987 13 7 -0.6823 -6.0342 0.7973 14 6 -1.7952 -6.0936 1.7481 15 6 -2.3556 -7.4922 1.7788 16 6 -2.0160 -8.4576 2.6593 17 7 -2.7504 -9.5678 2.3422 18 6 -2.8184 -10.8186 2.8832 19 6 -3.6629 -11.7278 2.3368 20 6 -4.4437 -11.3621 1.2312 21 7 -4.3590 -10.1523 0.7300 22 6 -3.5289 -9.2430 1.2611 23 7 -3.2722 -7.9833 0.9395 24 6 1.0585 -4.7991 -0.3078 25 6 1.7245 -3.6333 -0.5139 26 7 2.8477 -3.5803 -1.4764 27 8 3.2810 -4.6868 -2.0443 28 8 3.4139 -2.4268 -1.7649 29 1 -0.4850 0.8400 0.0004 30 1 -0.0273 -1.6492 1.6682 31 1 -1.2120 -3.7526 2.0093 32 1 -0.4198 -6.8294 0.3076 33 1 -2.5742 -5.3964 1.4396 34 1 -1.4387 -5.8236 2.7421 35 1 -1.2994 -8.3701 3.4627 36 1 -2.2081 -11.0808 3.7348 37 1 -3.7332 -12.7235 2.7490 38 1 -5.1220 -12.0788 0.7924 39 1 1.3495 -5.6881 -0.8476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161904511.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:40 Heat of formation + Delta-G solvation = 132.630933 kcal Electronic energy + Delta-G solvation = -27113.287452 eV Core-core repulsion = 23025.897551 eV Total energy + Delta-G solvation = -4087.389901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.04039 -40.53019 -39.41608 -38.25225 -37.08277 -35.74471 -35.32819 -34.12016 -32.54608 -32.01604 -31.38663 -30.36292 -28.39199 -26.71635 -25.81384 -24.82548 -24.33501 -23.36056 -22.22143 -21.40103 -20.05536 -19.25691 -18.69471 -18.60702 -18.02718 -17.47256 -17.31449 -17.16668 -16.57819 -16.42892 -15.86036 -15.76753 -15.44170 -15.22861 -14.86064 -14.72444 -14.62237 -14.04952 -13.88438 -13.74283 -13.71157 -13.38861 -13.12763 -12.93564 -12.90144 -12.71471 -12.13714 -11.93434 -11.59865 -11.49088 -11.13398 -10.99578 -10.94253 -10.79536 -10.58648 -10.11274 -10.05914 -9.43289 -9.24323 -8.56972 -6.66617 -0.93555 -0.37702 0.05559 0.77012 1.07847 1.31378 1.39979 1.46804 1.48168 1.52583 1.67160 2.09369 2.25907 2.51641 2.57949 2.87661 3.11487 3.30596 3.59439 3.70525 4.02389 4.07370 4.19425 4.27890 4.31362 4.36308 4.50186 4.56194 4.65993 4.70849 4.73378 4.81908 5.03584 5.07183 5.17948 5.30712 5.38765 5.49589 5.60382 5.69168 5.79200 6.00782 6.05839 6.36469 6.51316 6.59036 6.79174 6.93849 7.19026 7.49630 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020717 B = 0.002248 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.252491 B =12449.813948 C =13306.036197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.694 5.694 2 C 0.019 3.981 3 Si 1.003 2.997 4 H -0.267 1.267 5 H -0.225 1.225 6 H -0.251 1.251 7 C -0.251 4.251 8 H 0.107 0.893 9 C 0.014 3.986 10 C -0.056 4.056 11 C -0.138 4.138 12 C 0.201 3.799 13 N -0.727 5.727 14 C 0.212 3.788 15 C 0.033 3.967 16 C -0.056 4.056 17 N -0.404 5.404 18 C 0.103 3.897 19 C -0.194 4.194 20 C 0.177 3.823 21 N -0.495 5.495 22 C 0.351 3.649 23 N -0.516 5.516 24 C -0.216 4.216 25 C -0.028 4.028 26 N 0.018 4.982 27 O -0.503 6.503 28 O -0.418 6.418 29 H 0.333 0.667 30 H 0.152 0.848 31 H 0.165 0.835 32 H 0.394 0.606 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.228 0.772 36 H 0.219 0.781 37 H 0.215 0.785 38 H 0.218 0.782 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.891 -14.465 19.848 29.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.317 5.317 2 C -0.213 4.213 3 Si 0.819 3.181 4 H -0.192 1.192 5 H -0.147 1.147 6 H -0.175 1.175 7 C -0.282 4.282 8 H 0.125 0.875 9 C 0.009 3.991 10 C -0.076 4.076 11 C -0.159 4.159 12 C 0.093 3.907 13 N -0.359 5.359 14 C 0.088 3.912 15 C -0.099 4.099 16 C -0.189 4.189 17 N -0.081 5.081 18 C -0.027 4.027 19 C -0.216 4.216 20 C -0.009 4.009 21 N -0.208 5.208 22 C 0.002 3.998 23 N -0.240 5.240 24 C -0.244 4.244 25 C -0.143 4.143 26 N 0.379 4.621 27 O -0.608 6.608 28 O -0.538 6.538 29 H 0.148 0.852 30 H 0.169 0.831 31 H 0.182 0.818 32 H 0.228 0.772 33 H 0.089 0.911 34 H 0.130 0.870 35 H 0.245 0.755 36 H 0.236 0.764 37 H 0.232 0.768 38 H 0.235 0.765 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.885 -13.585 18.475 28.478 hybrid contribution 1.797 -0.697 -0.323 1.955 sum -15.087 -14.283 18.152 27.588 Atomic orbital electron populations 1.68925 1.09784 1.35761 1.17213 1.28820 0.96040 1.04874 0.91576 0.84876 0.79758 0.72973 0.80501 1.19173 1.14706 1.17454 1.22755 0.97690 0.90799 1.16997 0.87533 1.17765 0.95819 0.91291 0.94264 1.21236 0.92929 0.98120 0.95279 1.20882 1.01849 0.90951 1.02207 1.17285 0.91139 0.87685 0.94590 1.43928 1.35546 1.08785 1.47616 1.19653 0.87733 0.89326 0.94526 1.20972 0.96998 0.97628 0.94332 1.23013 1.04089 0.84775 1.07015 1.44129 1.28949 1.11385 1.23663 1.23191 0.99284 0.80741 0.99505 1.22426 0.97502 1.03348 0.98364 1.24218 0.94818 0.90419 0.91403 1.67931 1.18799 1.03556 1.30538 1.22049 0.95568 0.93378 0.88821 1.70495 1.19465 1.05673 1.28331 1.19161 1.01755 0.96504 1.06947 1.19962 0.94992 0.98793 1.00553 1.49349 1.05844 0.99978 1.06936 1.95898 1.76438 1.21156 1.67270 1.95840 1.65155 1.13684 1.79079 0.85239 0.83053 0.81769 0.77225 0.91078 0.86991 0.75527 0.76397 0.76792 0.76534 0.88720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -25.91 11.55 23.22 0.27 -25.64 16 2 C 0.02 0.76 5.39 87.22 0.47 1.23 16 3 Si 1.00 30.08 29.65 68.60 2.03 32.11 16 4 H -0.27 -8.67 7.11 99.48 0.71 -7.96 16 5 H -0.22 -5.34 7.11 99.48 0.71 -4.63 16 6 H -0.25 -7.78 7.11 99.48 0.71 -7.07 16 7 C -0.25 -12.36 7.70 24.76 0.19 -12.17 16 8 H 0.11 5.78 6.05 -2.91 -0.02 5.76 16 9 C 0.01 0.71 5.48 -21.25 -0.12 0.60 16 10 C -0.06 -2.19 8.62 22.57 0.19 -1.99 16 11 C -0.14 -4.71 9.21 22.18 0.20 -4.51 16 12 C 0.20 7.78 6.67 39.16 0.26 8.04 16 13 N -0.73 -22.75 5.65 -342.68 -1.93 -24.68 16 14 C 0.21 4.99 5.40 85.63 0.46 5.45 16 15 C 0.03 0.81 6.43 41.54 0.27 1.08 16 16 C -0.06 -0.98 11.67 83.17 0.97 -0.01 16 17 N -0.40 -7.13 2.95 -357.65 -1.05 -8.19 16 18 C 0.10 0.71 11.07 83.36 0.92 1.64 16 19 C -0.19 -0.70 10.06 22.13 0.22 -0.47 16 20 C 0.18 1.82 11.27 85.26 0.96 2.78 16 21 N -0.49 -11.65 10.48 -197.25 -2.07 -13.72 16 22 C 0.35 9.44 8.92 261.39 2.33 11.77 16 23 N -0.52 -16.50 11.31 -187.64 -2.12 -18.62 16 24 C -0.22 -10.95 9.35 22.18 0.21 -10.74 16 25 C -0.03 -1.61 6.89 36.68 0.25 -1.35 16 26 N 0.02 1.20 4.98 -45.75 -0.23 0.97 16 27 O -0.50 -36.40 19.14 3.51 0.07 -36.33 16 28 O -0.42 -28.83 16.32 3.52 0.06 -28.78 16 29 H 0.33 10.03 8.27 -92.71 -0.77 9.26 16 30 H 0.15 5.23 6.92 -2.91 -0.02 5.21 16 31 H 0.16 3.99 6.66 -2.91 -0.02 3.97 16 32 H 0.39 12.92 8.45 -92.71 -0.78 12.14 16 33 H 0.07 1.78 7.91 -2.39 -0.02 1.76 16 34 H 0.11 1.86 7.91 -2.39 -0.02 1.84 16 35 H 0.23 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.22 -0.57 8.06 -2.91 -0.02 -0.59 16 37 H 0.22 -1.42 8.06 -2.91 -0.02 -1.44 16 38 H 0.22 0.32 8.06 -2.91 -0.02 0.30 16 39 H 0.09 5.10 7.55 -2.91 -0.02 5.08 16 Total: -1.00 -99.21 349.40 3.18 -96.03 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.36 Total: 25.52 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 7.80 Total: 1.34 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -7.14 Total: -89.89 kcal Atomic # 8 Polarization: -65.23 SS G_CDS: 0.12 Total: -65.11 kcal Atomic # 14 Polarization: 30.08 SS G_CDS: 2.03 Total: 32.11 kcal Total: -99.21 3.18 -96.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161904511.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.657 kcal (2) G-P(sol) polarization free energy of solvation -99.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds