Wall clock time and date at job start Tue Mar 31 2020 22:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29514 * 1 3 3 Si 1.86801 * 120.00252 * 2 1 4 4 H 1.48502 * 109.46980 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47011 * 299.99687 * 3 2 1 6 6 H 1.48502 * 109.47127 * 59.99962 * 3 2 1 7 7 C 1.46525 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00350 * 178.38640 * 7 2 1 9 9 C 1.40362 * 119.99972 * 358.39203 * 7 2 1 10 10 C 1.41336 * 120.25221 * 31.27183 * 9 7 2 11 11 C 1.36489 * 119.96449 * 180.02562 * 10 9 7 12 12 C 1.38662 * 120.49981 * 359.73241 * 11 10 9 13 13 N 1.48019 * 119.74482 * 180.29167 * 12 11 10 14 14 O 1.31693 * 120.00001 * 6.05007 * 13 12 11 15 15 O 1.31704 * 119.99933 * 186.04676 * 13 12 11 16 16 C 1.39493 * 120.51628 * 0.55169 * 12 11 10 17 17 N 1.39671 * 119.99414 * 179.72071 * 16 12 11 18 18 C 1.46504 * 120.00065 * 172.29473 * 17 16 12 19 19 C 1.50697 * 109.46852 * 179.97438 * 18 17 16 20 20 C 1.34998 * 125.68687 * 95.00320 * 19 18 17 21 21 N 1.36837 * 107.09955 * 179.97438 * 20 19 18 22 22 C 1.36459 * 132.73838 * 180.02562 * 21 20 19 23 23 C 1.35579 * 119.07734 * 179.97438 * 22 21 20 24 24 C 1.40206 * 119.32648 * 0.03642 * 23 22 21 25 25 N 1.31228 * 120.37714 * 359.97438 * 24 23 22 26 26 C 1.34094 * 120.92071 * 0.02562 * 25 24 23 27 27 N 1.32514 * 131.94360 * 180.02562 * 26 25 24 28 28 C 1.38170 * 120.01802 * 359.44829 * 16 12 11 29 29 H 0.96999 * 119.99481 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.02341 * 0.05503 * 10 9 7 31 31 H 1.07999 * 119.75013 * 180.02562 * 11 10 9 32 32 H 0.96999 * 119.99960 * 352.29182 * 17 16 12 33 33 H 1.08994 * 109.46885 * 60.00223 * 18 17 16 34 34 H 1.08998 * 109.46838 * 300.00118 * 18 17 16 35 35 H 1.08005 * 126.45361 * 359.95013 * 20 19 18 36 36 H 1.08001 * 120.46095 * 359.97357 * 22 21 20 37 37 H 1.08002 * 120.33463 * 180.02562 * 23 22 21 38 38 H 1.07999 * 119.81042 * 180.25765 * 24 23 22 39 39 H 1.07999 * 120.25196 * 180.24985 * 28 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2951 0.0000 0.0000 3 14 2.2292 1.6177 0.0000 4 1 3.6892 1.3462 0.0006 5 1 1.8706 2.3963 -1.2125 6 1 1.8705 2.3964 1.2125 7 6 2.0278 -1.2690 0.0006 8 1 3.1074 -1.2692 -0.0258 9 6 1.3263 -2.4843 0.0352 10 6 0.0516 -2.5881 -0.5663 11 6 -0.6255 -3.7726 -0.5287 12 6 -0.0701 -4.8813 0.0918 13 7 -0.8164 -6.1594 0.1172 14 8 -1.9466 -6.2752 -0.5487 15 8 -0.3499 -7.1807 0.8056 16 6 1.1840 -4.8002 0.6971 17 7 1.7306 -5.9222 1.3241 18 6 3.1120 -5.8892 1.8108 19 6 3.4539 -7.2141 2.4422 20 6 4.0698 -8.2449 1.8253 21 7 4.1906 -9.2503 2.7456 22 6 4.7240 -10.5048 2.6820 23 6 4.6965 -11.2892 3.7875 24 6 4.1215 -10.7944 4.9666 25 7 3.6152 -9.5842 5.0008 26 6 3.6357 -8.7977 3.9150 27 7 3.1973 -7.5647 3.7059 28 6 1.8882 -3.6117 0.6717 29 1 -0.4849 0.8401 -0.0004 30 1 -0.3863 -1.7308 -1.0559 31 1 -1.5992 -3.8482 -0.9898 32 1 1.1955 -6.7233 1.4374 33 1 3.2175 -5.0963 2.5511 34 1 3.7868 -5.6991 0.9761 35 1 4.4039 -8.2712 0.7986 36 1 5.1619 -10.8677 1.7639 37 1 5.1132 -12.2853 3.7600 38 1 4.0992 -11.4111 5.8529 39 1 2.8613 -3.5458 1.1356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161908402.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:43 Heat of formation + Delta-G solvation = 132.281040 kcal Electronic energy + Delta-G solvation = -27545.866799 eV Core-core repulsion = 23458.461726 eV Total energy + Delta-G solvation = -4087.405073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.06556 -40.64524 -39.40772 -38.52379 -37.07223 -35.75293 -35.46434 -34.59021 -32.64590 -32.27069 -31.09136 -29.77288 -28.63405 -27.47326 -25.47675 -24.88649 -24.36075 -22.95978 -22.65288 -21.53952 -19.88203 -19.25528 -18.88039 -18.68344 -18.48824 -17.56475 -17.42778 -17.12558 -16.71481 -16.48874 -16.36999 -15.48146 -15.28409 -15.07790 -14.94536 -14.83813 -14.62461 -13.90885 -13.86048 -13.77955 -13.59904 -13.43155 -13.15628 -12.93209 -12.90008 -12.75676 -11.95537 -11.77888 -11.64871 -11.57609 -11.49434 -11.45048 -11.31597 -10.92143 -10.80286 -10.12175 -9.98592 -9.28483 -9.17294 -8.53635 -6.87395 -1.11484 -0.39140 0.03436 0.76981 1.09110 1.09713 1.36510 1.42210 1.48708 1.54838 1.65418 2.09558 2.35578 2.47600 2.56762 2.82420 3.25557 3.27991 3.56844 3.68124 3.92382 4.01537 4.14073 4.28054 4.40099 4.48540 4.51850 4.60563 4.63392 4.69100 4.77544 4.86143 4.88707 5.13491 5.16316 5.34385 5.42578 5.60161 5.62295 5.67039 5.74305 6.05854 6.23872 6.30838 6.48678 6.51474 6.61730 6.89316 6.91107 7.68880 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013931 B = 0.002744 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.404772 B =10200.063708 C =11740.150902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.732 5.732 2 C 0.021 3.979 3 Si 1.013 2.987 4 H -0.238 1.238 5 H -0.256 1.256 6 H -0.264 1.264 7 C -0.326 4.326 8 H 0.133 0.867 9 C 0.089 3.911 10 C -0.133 4.133 11 C -0.078 4.078 12 C -0.127 4.127 13 N 0.055 4.945 14 O -0.404 6.404 15 O -0.405 6.405 16 C 0.279 3.721 17 N -0.731 5.731 18 C 0.204 3.796 19 C 0.032 3.968 20 C -0.060 4.060 21 N -0.404 5.404 22 C 0.101 3.899 23 C -0.192 4.192 24 C 0.178 3.822 25 N -0.493 5.493 26 C 0.353 3.647 27 N -0.517 5.517 28 C -0.298 4.298 29 H 0.321 0.679 30 H 0.148 0.852 31 H 0.115 0.885 32 H 0.404 0.596 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.225 0.775 36 H 0.219 0.781 37 H 0.219 0.781 38 H 0.223 0.777 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.873 -6.854 2.464 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.352 5.352 2 C -0.210 4.210 3 Si 0.829 3.171 4 H -0.160 1.160 5 H -0.180 1.180 6 H -0.188 1.188 7 C -0.351 4.351 8 H 0.151 0.849 9 C 0.083 3.917 10 C -0.155 4.155 11 C -0.099 4.099 12 C -0.243 4.243 13 N 0.440 4.560 14 O -0.536 6.536 15 O -0.529 6.529 16 C 0.169 3.831 17 N -0.375 5.375 18 C 0.080 3.920 19 C -0.099 4.099 20 C -0.193 4.193 21 N -0.081 5.081 22 C -0.029 4.029 23 C -0.214 4.214 24 C -0.007 4.007 25 N -0.206 5.206 26 C 0.004 3.996 27 N -0.241 5.241 28 C -0.326 4.326 29 H 0.135 0.865 30 H 0.166 0.834 31 H 0.133 0.867 32 H 0.253 0.747 33 H 0.092 0.908 34 H 0.127 0.873 35 H 0.242 0.758 36 H 0.236 0.764 37 H 0.236 0.764 38 H 0.239 0.761 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 17.882 -5.910 3.751 19.203 hybrid contribution -0.515 -1.025 -1.008 1.527 sum 17.367 -6.935 2.743 18.901 Atomic orbital electron populations 1.69046 1.10706 1.34611 1.20852 1.28975 0.95717 1.05904 0.90383 0.84644 0.80016 0.72832 0.79579 1.16020 1.18047 1.18831 1.22323 0.97376 0.88818 1.26605 0.84940 1.18045 0.91972 0.93297 0.88384 1.21612 0.96157 0.95370 1.02366 1.20105 0.99689 0.91403 0.98663 1.20238 0.96930 0.83431 1.23695 1.49901 1.01879 1.03655 1.00530 1.96021 1.12672 1.93243 1.51660 1.95616 1.74053 1.32821 1.50385 1.17453 0.88592 0.88601 0.88469 1.46229 1.14395 1.15293 1.61593 1.19670 0.83242 0.91075 0.97991 1.20931 1.01201 0.97867 0.89934 1.22916 1.11241 0.87574 0.97547 1.44084 1.38434 1.12965 1.12585 1.23237 0.94662 0.81046 1.03991 1.22451 1.03603 1.04149 0.91237 1.24294 0.87117 0.88675 1.00644 1.67948 1.21253 1.07556 1.23872 1.22059 1.00433 0.92873 0.84245 1.70439 1.25006 1.09983 1.18688 1.20625 1.04791 0.90847 1.16322 0.86507 0.83413 0.86695 0.74657 0.90833 0.87342 0.75839 0.76408 0.76394 0.76074 0.83896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -26.51 10.63 23.21 0.25 -26.26 16 2 C 0.02 0.68 5.58 87.20 0.49 1.16 16 3 Si 1.01 23.64 29.64 68.60 2.03 25.68 16 4 H -0.24 -5.20 7.11 99.48 0.71 -4.49 16 5 H -0.26 -5.82 7.11 99.48 0.71 -5.11 16 6 H -0.26 -6.29 7.11 99.48 0.71 -5.58 16 7 C -0.33 -11.78 9.30 24.95 0.23 -11.55 16 8 H 0.13 4.08 7.94 -2.91 -0.02 4.05 16 9 C 0.09 3.74 5.61 -21.29 -0.12 3.62 16 10 C -0.13 -5.94 8.71 22.62 0.20 -5.75 16 11 C -0.08 -3.88 9.50 21.96 0.21 -3.67 16 12 C -0.13 -6.78 6.92 36.78 0.25 -6.53 16 13 N 0.05 3.29 4.98 -45.50 -0.23 3.06 16 14 O -0.40 -25.41 19.14 3.53 0.07 -25.35 16 15 O -0.41 -24.62 16.29 3.51 0.06 -24.56 16 16 C 0.28 13.19 6.63 38.18 0.25 13.44 16 17 N -0.73 -32.42 5.60 -343.27 -1.92 -34.35 16 18 C 0.20 7.03 5.52 85.63 0.47 7.51 16 19 C 0.03 1.12 6.43 41.54 0.27 1.39 16 20 C -0.06 -1.58 11.67 83.17 0.97 -0.61 16 21 N -0.40 -9.98 2.95 -357.66 -1.05 -11.03 16 22 C 0.10 1.25 11.07 83.36 0.92 2.18 16 23 C -0.19 -1.51 10.06 22.13 0.22 -1.29 16 24 C 0.18 2.58 11.27 85.26 0.96 3.54 16 25 N -0.49 -14.15 10.48 -197.25 -2.07 -16.22 16 26 C 0.35 11.92 8.92 261.39 2.33 14.25 16 27 N -0.52 -20.84 11.31 -187.65 -2.12 -22.96 16 28 C -0.30 -12.44 9.08 22.97 0.21 -12.23 16 29 H 0.32 9.88 8.27 -92.71 -0.77 9.11 16 30 H 0.15 6.35 6.01 -2.91 -0.02 6.34 16 31 H 0.12 5.68 7.56 -2.91 -0.02 5.66 16 32 H 0.40 20.34 4.68 -112.26 -0.53 19.81 16 33 H 0.07 2.55 7.66 -2.39 -0.02 2.53 16 34 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 35 H 0.23 3.90 8.06 -2.91 -0.02 3.88 16 36 H 0.22 0.58 8.06 -2.91 -0.02 0.56 16 37 H 0.22 -0.71 8.06 -2.91 -0.02 -0.73 16 38 H 0.22 1.04 8.06 -2.91 -0.02 1.01 16 39 H 0.14 5.11 6.71 -2.91 -0.02 5.09 16 Total: -1.00 -84.94 347.79 3.49 -81.45 By element: Atomic # 1 Polarization: 44.46 SS G_CDS: 0.62 Total: 45.08 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 7.87 Total: 5.46 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -7.15 Total: -107.76 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: 0.12 Total: -49.90 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: 2.03 Total: 25.68 kcal Total: -84.94 3.49 -81.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161908402.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.726 kcal (2) G-P(sol) polarization free energy of solvation -84.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds