Wall clock time and date at job start Tue Mar 31 2020 22:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86799 * 119.99791 * 2 1 4 4 H 1.48504 * 109.47209 * 239.99828 * 3 2 1 5 5 H 1.48497 * 109.47396 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47024 * 120.00352 * 3 2 1 7 7 C 1.40022 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00008 * 193.41154 * 7 2 1 9 9 C 1.41555 * 120.00221 * 13.41061 * 7 2 1 10 10 C 1.41185 * 120.99112 * 206.76720 * 9 7 2 11 11 C 1.36560 * 119.14209 * 179.97438 * 10 9 7 12 12 N 1.32095 * 121.26821 * 359.73909 * 11 10 9 13 13 C 1.32526 * 122.21717 * 0.53306 * 12 11 10 14 14 N 1.39086 * 119.65770 * 179.74765 * 13 12 11 15 15 C 1.46989 * 110.99878 * 261.17205 * 14 13 12 16 16 C 1.53455 * 109.64302 * 53.62377 * 15 14 13 17 17 N 1.46337 * 108.21864 * 49.42246 * 16 15 14 18 18 N 1.39489 * 129.20735 * 163.62146 * 17 16 15 19 19 C 1.31061 * 106.53648 * 180.25786 * 18 17 16 20 20 C 1.50706 * 125.48561 * 179.97438 * 19 18 17 21 21 F 1.39896 * 109.46961 * 104.99887 * 20 19 18 22 22 F 1.39900 * 109.47013 * 225.00186 * 20 19 18 23 23 F 1.39902 * 109.47048 * 344.99815 * 20 19 18 24 24 N 1.33549 * 109.02799 * 359.94402 * 19 18 17 25 25 C 1.30122 * 109.71353 * 359.96244 * 24 19 18 26 26 C 1.47344 * 110.99929 * 25.38355 * 14 13 12 27 27 C 1.38751 * 120.68479 * 359.47225 * 13 12 11 28 28 H 0.96998 * 119.99989 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.43047 * 359.95540 * 10 9 7 30 30 H 1.08000 * 119.36095 * 180.02562 * 11 10 9 31 31 H 1.09002 * 109.44309 * 173.67341 * 15 14 13 32 32 H 1.09003 * 109.44417 * 293.60903 * 15 14 13 33 33 H 1.09001 * 109.71279 * 169.10647 * 16 15 14 34 34 H 1.08999 * 109.71009 * 289.69621 * 16 15 14 35 35 H 1.09000 * 109.73876 * 166.31141 * 26 14 13 36 36 H 1.09002 * 109.74063 * 45.61113 * 26 14 13 37 37 H 1.08001 * 120.66380 * 180.23218 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0953 1.6965 -1.2125 5 1 1.2765 2.7465 -0.0006 6 1 3.0953 1.6964 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0656 -1.2255 0.2164 9 6 1.3289 -2.4217 -0.2854 10 6 1.7939 -3.6538 0.2236 11 6 1.1095 -4.7973 -0.0745 12 7 0.0217 -4.7698 -0.8234 13 6 -0.4575 -3.6439 -1.3322 14 7 -1.6045 -3.6772 -2.1183 15 6 -1.2639 -3.6561 -3.5480 16 6 -0.2719 -4.7849 -3.8587 17 7 -0.7952 -6.0250 -3.2843 18 7 -0.4304 -7.3441 -3.5534 19 6 -1.1847 -8.1018 -2.7953 20 6 -1.1441 -9.6075 -2.7473 21 9 -0.5039 -10.0196 -1.5737 22 9 -2.4495 -10.1101 -2.7676 23 9 -0.4412 -10.0906 -3.8563 24 7 -1.9946 -7.3246 -2.0716 25 6 -1.7707 -6.0743 -2.3538 26 6 -2.4383 -4.8458 -1.7863 27 6 0.1697 -2.4314 -1.0841 28 1 -0.4850 0.8400 0.0004 29 1 2.6796 -3.6915 0.8404 30 1 1.4619 -5.7417 0.3133 31 1 -2.1692 -3.7960 -4.1387 32 1 -0.8113 -2.6968 -3.7991 33 1 -0.1667 -4.8953 -4.9380 34 1 0.6974 -4.5545 -3.4166 35 1 -3.4285 -4.7284 -2.2265 36 1 -2.5249 -4.9408 -0.7039 37 1 -0.2233 -1.5135 -1.4958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163716945.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:09 Heat of formation + Delta-G solvation = -7.279513 kcal Electronic energy + Delta-G solvation = -29625.897439 eV Core-core repulsion = 24990.583826 eV Total energy + Delta-G solvation = -4635.313613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.100 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.16869 -47.70247 -47.66635 -42.45912 -39.51854 -37.14227 -34.27359 -33.63760 -31.89954 -30.83846 -29.99501 -29.12616 -27.15811 -26.12404 -24.94150 -23.65081 -21.86399 -21.65782 -21.21638 -19.57748 -18.58024 -18.28982 -18.08312 -17.51510 -16.60914 -16.24321 -15.84270 -15.36699 -15.18743 -14.88405 -14.52724 -14.45045 -14.37333 -14.08796 -13.99151 -13.81504 -13.80182 -13.45919 -13.38751 -12.85171 -12.80125 -12.45558 -12.26523 -12.21393 -11.85050 -11.55360 -11.49531 -11.32451 -11.03661 -10.45154 -10.24697 -10.14070 -9.73884 -9.60532 -9.50590 -9.20002 -8.27182 -8.18365 -7.50939 -6.99393 -4.79064 1.48540 1.91854 2.41540 2.57772 2.63914 2.69974 2.92734 2.94497 3.05993 3.44066 3.73006 3.80679 3.93627 4.30298 4.35468 4.40429 4.47190 4.81445 4.97718 5.31554 5.34094 5.42918 5.52996 5.63213 5.70763 5.79646 5.96098 6.21287 6.32661 6.57563 6.64953 6.74400 6.81238 6.94952 7.01347 7.25852 7.31637 7.69398 7.94991 8.00959 8.30923 8.52442 8.56281 9.26555 9.91978 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.024927 B = 0.003078 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.000718 B = 9095.560577 C = 9502.002405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.077 3.923 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.452 4.452 8 H 0.082 0.918 9 C 0.133 3.867 10 C -0.269 4.269 11 C 0.118 3.882 12 N -0.600 5.600 13 C 0.252 3.748 14 N -0.462 5.462 15 C 0.045 3.955 16 C 0.096 3.904 17 N -0.344 5.344 18 N -0.261 5.261 19 C 0.124 3.876 20 C 0.579 3.421 21 F -0.162 7.162 22 F -0.161 7.161 23 F -0.164 7.164 24 N -0.507 5.507 25 C 0.307 3.693 26 C 0.145 3.855 27 C -0.181 4.181 28 H 0.286 0.714 29 H 0.102 0.898 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.768 -5.856 -7.296 10.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.144 4.144 3 Si 0.738 3.262 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.483 4.483 8 H 0.100 0.900 9 C 0.124 3.876 10 C -0.292 4.292 11 C -0.036 4.036 12 N -0.319 5.319 13 C 0.030 3.970 14 N -0.180 5.180 15 C -0.083 4.083 16 C -0.027 4.027 17 N -0.134 5.134 18 N -0.092 5.092 19 C -0.160 4.160 20 C 0.522 3.478 21 F -0.144 7.144 22 F -0.142 7.142 23 F -0.145 7.145 24 N -0.235 5.235 25 C 0.029 3.971 26 C 0.015 3.985 27 C -0.206 4.206 28 H 0.097 0.903 29 H 0.120 0.880 30 H 0.134 0.866 31 H 0.110 0.890 32 H 0.134 0.866 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.128 0.872 36 H 0.137 0.863 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.369 -6.388 -7.687 10.908 hybrid contribution 1.479 0.833 0.286 1.721 sum -2.890 -5.555 -7.401 9.695 Atomic orbital electron populations 1.69739 1.07544 1.29948 1.33171 1.25972 0.94869 1.01541 0.91985 0.86265 0.80093 0.79721 0.80167 1.18676 1.20056 1.18830 1.19595 0.96836 0.90343 1.41552 0.89967 1.17742 0.90436 0.92284 0.87094 1.21656 1.04844 0.94228 1.08469 1.21276 0.90918 0.96660 0.94734 1.67178 1.16699 1.29061 1.18927 1.19302 0.90411 0.90617 0.96687 1.60302 1.17028 1.37356 1.03344 1.22806 0.98597 0.98123 0.88793 1.22723 1.00492 0.79473 1.00028 1.49974 1.27863 1.04658 1.30955 1.77761 1.20967 0.87693 1.22824 1.23553 0.98067 0.95127 0.99231 1.16277 0.74210 0.83206 0.74149 1.93256 1.81825 1.91115 1.48176 1.93237 1.36557 1.88306 1.96126 1.93233 1.79014 1.89063 1.53197 1.69912 1.27311 1.00104 1.26173 1.24931 0.89013 0.94934 0.88191 1.21012 0.95024 0.79392 1.03113 1.21690 0.99625 0.95857 1.03390 0.90269 0.87980 0.86571 0.88980 0.86635 0.88215 0.88468 0.87201 0.86328 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.03 10.92 55.55 0.61 -17.43 16 2 C 0.08 1.72 5.25 -17.34 -0.09 1.63 16 3 Si 0.91 16.79 29.58 -169.99 -5.03 11.77 16 4 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 5 H -0.28 -4.96 7.11 56.52 0.40 -4.55 16 6 H -0.26 -4.87 7.11 56.52 0.40 -4.46 16 7 C -0.45 -10.77 9.12 -37.65 -0.34 -11.12 16 8 H 0.08 1.89 7.88 -52.48 -0.41 1.47 16 9 C 0.13 3.18 5.58 -106.56 -0.59 2.59 16 10 C -0.27 -6.06 9.85 -39.07 -0.38 -6.44 16 11 C 0.12 2.57 11.10 -18.04 -0.20 2.37 16 12 N -0.60 -12.81 7.19 -12.82 -0.09 -12.91 16 13 C 0.25 5.15 4.43 -154.97 -0.69 4.46 16 14 N -0.46 -7.65 4.94 -173.79 -0.86 -8.51 16 15 C 0.05 0.59 5.90 -3.54 -0.02 0.56 16 16 C 0.10 1.37 6.64 -3.89 -0.03 1.34 16 17 N -0.34 -5.86 3.74 -58.19 -0.22 -6.08 16 18 N -0.26 -4.74 12.55 32.53 0.41 -4.33 16 19 C 0.12 2.21 7.42 -156.29 -1.16 1.05 16 20 C 0.58 8.94 3.57 36.01 0.13 9.07 16 21 F -0.16 -2.54 17.30 2.25 0.04 -2.50 16 22 F -0.16 -2.35 17.30 2.25 0.04 -2.31 16 23 F -0.16 -2.39 17.15 2.25 0.04 -2.35 16 24 N -0.51 -9.34 11.18 -7.99 -0.09 -9.43 16 25 C 0.31 5.31 6.20 -155.77 -0.97 4.35 16 26 C 0.15 2.25 5.89 -4.64 -0.03 2.22 16 27 C -0.18 -4.10 8.62 -38.44 -0.33 -4.43 16 28 H 0.29 6.04 8.29 -40.82 -0.34 5.70 16 29 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 30 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 31 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 32 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.10 1.62 7.46 -51.93 -0.39 1.23 16 35 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.12 2.01 7.89 -51.93 -0.41 1.60 16 37 H 0.13 3.10 6.29 -52.49 -0.33 2.77 16 LS Contribution 329.19 15.07 4.96 4.96 Total: -1.00 -27.26 329.19 -8.10 -35.36 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -3.21 Total: 6.10 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: -4.70 Total: 7.66 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.24 Total: -58.68 kcal Atomic # 9 Polarization: -7.29 SS G_CDS: 0.12 Total: -7.17 kcal Atomic # 14 Polarization: 16.79 SS G_CDS: -5.03 Total: 11.77 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.26 -8.10 -35.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163716945.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.085 kcal (2) G-P(sol) polarization free energy of solvation -27.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds