Wall clock time and date at job start Tue Mar 31 2020 22:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86799 * 119.99791 * 2 1 4 4 H 1.48504 * 109.47209 * 239.99828 * 3 2 1 5 5 H 1.48497 * 109.47396 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47024 * 120.00352 * 3 2 1 7 7 C 1.40022 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00008 * 193.41154 * 7 2 1 9 9 C 1.41555 * 120.00221 * 13.41061 * 7 2 1 10 10 C 1.41185 * 120.99112 * 206.76720 * 9 7 2 11 11 C 1.36560 * 119.14209 * 179.97438 * 10 9 7 12 12 N 1.32095 * 121.26821 * 359.73909 * 11 10 9 13 13 C 1.32526 * 122.21717 * 0.53306 * 12 11 10 14 14 N 1.39086 * 119.65770 * 179.74765 * 13 12 11 15 15 C 1.46989 * 110.99878 * 261.17205 * 14 13 12 16 16 C 1.53455 * 109.64302 * 53.62377 * 15 14 13 17 17 N 1.46337 * 108.21864 * 49.42246 * 16 15 14 18 18 N 1.39489 * 129.20735 * 163.62146 * 17 16 15 19 19 C 1.31061 * 106.53648 * 180.25786 * 18 17 16 20 20 C 1.50706 * 125.48561 * 179.97438 * 19 18 17 21 21 F 1.39896 * 109.46961 * 104.99887 * 20 19 18 22 22 F 1.39900 * 109.47013 * 225.00186 * 20 19 18 23 23 F 1.39902 * 109.47048 * 344.99815 * 20 19 18 24 24 N 1.33549 * 109.02799 * 359.94402 * 19 18 17 25 25 C 1.30122 * 109.71353 * 359.96244 * 24 19 18 26 26 C 1.47344 * 110.99929 * 25.38355 * 14 13 12 27 27 C 1.38751 * 120.68479 * 359.47225 * 13 12 11 28 28 H 0.96998 * 119.99989 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.43047 * 359.95540 * 10 9 7 30 30 H 1.08000 * 119.36095 * 180.02562 * 11 10 9 31 31 H 1.09002 * 109.44309 * 173.67341 * 15 14 13 32 32 H 1.09003 * 109.44417 * 293.60903 * 15 14 13 33 33 H 1.09001 * 109.71279 * 169.10647 * 16 15 14 34 34 H 1.08999 * 109.71009 * 289.69621 * 16 15 14 35 35 H 1.09000 * 109.73876 * 166.31141 * 26 14 13 36 36 H 1.09002 * 109.74063 * 45.61113 * 26 14 13 37 37 H 1.08001 * 120.66380 * 180.23218 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0953 1.6965 -1.2125 5 1 1.2765 2.7465 -0.0006 6 1 3.0953 1.6964 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0656 -1.2255 0.2164 9 6 1.3289 -2.4217 -0.2854 10 6 1.7939 -3.6538 0.2236 11 6 1.1095 -4.7973 -0.0745 12 7 0.0217 -4.7698 -0.8234 13 6 -0.4575 -3.6439 -1.3322 14 7 -1.6045 -3.6772 -2.1183 15 6 -1.2639 -3.6561 -3.5480 16 6 -0.2719 -4.7849 -3.8587 17 7 -0.7952 -6.0250 -3.2843 18 7 -0.4304 -7.3441 -3.5534 19 6 -1.1847 -8.1018 -2.7953 20 6 -1.1441 -9.6075 -2.7473 21 9 -0.5039 -10.0196 -1.5737 22 9 -2.4495 -10.1101 -2.7676 23 9 -0.4412 -10.0906 -3.8563 24 7 -1.9946 -7.3246 -2.0716 25 6 -1.7707 -6.0743 -2.3538 26 6 -2.4383 -4.8458 -1.7863 27 6 0.1697 -2.4314 -1.0841 28 1 -0.4850 0.8400 0.0004 29 1 2.6796 -3.6915 0.8404 30 1 1.4619 -5.7417 0.3133 31 1 -2.1692 -3.7960 -4.1387 32 1 -0.8113 -2.6968 -3.7991 33 1 -0.1667 -4.8953 -4.9380 34 1 0.6974 -4.5545 -3.4166 35 1 -3.4285 -4.7284 -2.2265 36 1 -2.5249 -4.9408 -0.7039 37 1 -0.2233 -1.5135 -1.4958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163716945.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:08 Heat of formation + Delta-G solvation = -22.513496 kcal Electronic energy + Delta-G solvation = -29626.558034 eV Core-core repulsion = 24990.583826 eV Total energy + Delta-G solvation = -4635.974208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.100 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.38077 -48.90746 -48.87505 -43.77938 -41.03226 -38.62578 -35.94722 -34.97316 -33.25345 -32.53671 -31.29677 -30.66002 -28.49361 -27.78968 -26.28678 -24.91178 -23.54605 -23.03914 -22.63963 -20.99755 -19.80260 -19.56136 -19.40306 -19.02735 -17.97464 -17.53020 -17.38395 -16.87195 -16.52208 -16.34914 -16.06992 -15.74372 -15.66268 -15.35181 -15.29359 -15.02009 -15.00486 -14.94723 -14.65341 -14.39455 -14.16882 -13.90324 -13.63682 -13.53746 -13.16729 -13.09657 -12.90371 -12.66996 -12.63297 -12.01679 -11.92283 -11.49927 -11.25306 -11.06238 -10.83344 -10.64594 -9.97899 -9.91952 -9.11100 -8.67808 -6.58169 0.15252 0.66926 0.75344 0.95213 1.27926 1.41612 1.42355 1.52383 1.55619 2.19518 2.19803 2.51580 2.67919 2.71094 3.09257 3.12348 3.28580 3.57732 3.70051 3.88850 3.99492 4.18638 4.29002 4.40069 4.52486 4.63341 4.68465 4.68627 4.85043 4.93774 4.99695 5.21235 5.23844 5.46733 5.50113 5.59316 5.74059 5.94797 6.28098 6.58311 6.64473 6.77982 6.80888 7.55906 8.25780 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.024927 B = 0.003078 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.000718 B = 9095.560577 C = 9502.002405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.043 3.957 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.264 1.264 7 C -0.485 4.485 8 H 0.080 0.920 9 C 0.108 3.892 10 C -0.283 4.283 11 C 0.111 3.889 12 N -0.603 5.603 13 C 0.270 3.730 14 N -0.466 5.466 15 C 0.048 3.952 16 C 0.095 3.905 17 N -0.346 5.346 18 N -0.277 5.277 19 C 0.115 3.885 20 C 0.586 3.414 21 F -0.164 7.164 22 F -0.155 7.155 23 F -0.158 7.158 24 N -0.526 5.526 25 C 0.302 3.698 26 C 0.148 3.852 27 C -0.199 4.199 28 H 0.294 0.706 29 H 0.107 0.893 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.134 0.866 34 H 0.069 0.931 35 H 0.153 0.847 36 H 0.101 0.899 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.602 -5.234 -8.508 10.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.175 4.175 3 Si 0.803 3.197 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.189 1.189 7 C -0.515 4.515 8 H 0.098 0.902 9 C 0.100 3.900 10 C -0.306 4.306 11 C -0.043 4.043 12 N -0.322 5.322 13 C 0.046 3.954 14 N -0.184 5.184 15 C -0.079 4.079 16 C -0.028 4.028 17 N -0.137 5.137 18 N -0.109 5.109 19 C -0.169 4.169 20 C 0.529 3.471 21 F -0.146 7.146 22 F -0.136 7.136 23 F -0.139 7.139 24 N -0.254 5.254 25 C 0.025 3.975 26 C 0.018 3.982 27 C -0.224 4.224 28 H 0.105 0.895 29 H 0.125 0.875 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.087 0.913 35 H 0.170 0.830 36 H 0.120 0.880 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.205 -5.776 -8.909 11.824 hybrid contribution 1.687 0.569 0.644 1.893 sum -3.518 -5.207 -8.265 10.383 Atomic orbital electron populations 1.69779 1.08743 1.31200 1.33313 1.26706 0.95550 1.04226 0.91002 0.85230 0.78793 0.75640 0.80001 1.18285 1.18986 1.18881 1.19842 0.97034 0.91448 1.43220 0.90219 1.18093 0.91356 0.92898 0.87692 1.21775 1.05407 0.94333 1.09131 1.21537 0.91069 0.96986 0.94660 1.67314 1.16544 1.29406 1.18913 1.19481 0.90620 0.89560 0.95769 1.60254 1.15363 1.37873 1.04959 1.23008 1.00247 0.98078 0.86598 1.22908 0.99353 0.78805 1.01718 1.50164 1.27693 1.04840 1.30954 1.77703 1.21385 0.88388 1.23432 1.23923 0.97855 0.96074 0.99057 1.16083 0.74468 0.82371 0.74213 1.93251 1.81919 1.91022 1.48387 1.93248 1.36151 1.88096 1.96105 1.93244 1.78925 1.88864 1.52880 1.69899 1.28049 1.00763 1.26724 1.25251 0.89108 0.95130 0.88050 1.21201 0.96414 0.78173 1.02454 1.21602 1.00137 0.96315 1.04303 0.89524 0.87520 0.85264 0.84993 0.85638 0.84859 0.91288 0.82954 0.88045 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.38 10.92 21.84 0.24 -37.14 16 2 C 0.04 1.95 5.25 85.29 0.45 2.40 16 3 Si 0.98 34.04 29.58 68.60 2.03 36.07 16 4 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 5 H -0.27 -8.69 7.11 99.48 0.71 -7.98 16 6 H -0.26 -9.11 7.11 99.48 0.71 -8.41 16 7 C -0.48 -23.61 9.12 23.52 0.21 -23.39 16 8 H 0.08 3.76 7.88 -2.91 -0.02 3.74 16 9 C 0.11 5.30 5.58 -21.12 -0.12 5.18 16 10 C -0.28 -13.08 9.85 22.60 0.22 -12.86 16 11 C 0.11 4.88 11.10 84.26 0.94 5.82 16 12 N -0.60 -25.68 7.19 -194.46 -1.40 -27.07 16 13 C 0.27 10.89 4.43 132.90 0.59 11.48 16 14 N -0.47 -14.57 4.94 -703.75 -3.48 -18.05 16 15 C 0.05 1.11 5.90 86.44 0.51 1.62 16 16 C 0.09 2.50 6.64 86.56 0.58 3.08 16 17 N -0.35 -11.20 3.74 -338.02 -1.26 -12.46 16 18 N -0.28 -9.72 12.55 -50.99 -0.64 -10.36 16 19 C 0.11 3.97 7.42 138.44 1.03 4.99 16 20 C 0.59 17.50 3.57 71.24 0.25 17.75 16 21 F -0.16 -5.02 17.30 44.97 0.78 -4.25 16 22 F -0.15 -4.33 17.30 44.97 0.78 -3.55 16 23 F -0.16 -4.43 17.15 44.97 0.77 -3.66 16 24 N -0.53 -18.72 11.18 -179.20 -2.00 -20.72 16 25 C 0.30 9.94 6.20 138.35 0.86 10.79 16 26 C 0.15 4.25 5.89 85.53 0.50 4.76 16 27 C -0.20 -9.12 8.62 23.01 0.20 -8.92 16 28 H 0.29 12.29 8.29 -92.71 -0.77 11.52 16 29 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 30 H 0.13 5.21 8.06 -2.91 -0.02 5.18 16 31 H 0.13 2.08 8.08 -2.39 -0.02 2.06 16 32 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.07 2.25 7.46 -2.39 -0.02 2.23 16 35 H 0.15 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.10 3.31 7.89 -2.39 -0.02 3.30 16 37 H 0.12 5.83 6.29 -2.91 -0.02 5.81 16 Total: -1.00 -59.28 329.19 3.18 -56.10 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 1.15 Total: 22.40 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: 6.22 Total: 22.69 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -8.54 Total: -125.81 kcal Atomic # 9 Polarization: -13.78 SS G_CDS: 2.33 Total: -11.45 kcal Atomic # 14 Polarization: 34.04 SS G_CDS: 2.03 Total: 36.07 kcal Total: -59.28 3.18 -56.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163716945.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.586 kcal (2) G-P(sol) polarization free energy of solvation -59.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds