Wall clock time and date at job start Tue Mar 31 2020 22:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39297 * 119.69244 * 69.51094 * 3 2 1 5 5 C 1.38697 * 119.21301 * 179.97438 * 4 3 2 6 6 C 1.38369 * 118.59967 * 359.74374 * 5 4 3 7 7 N 1.48015 * 120.33926 * 180.24671 * 6 5 4 8 8 O 1.21806 * 120.00393 * 355.59513 * 7 6 5 9 9 O 1.21807 * 120.00162 * 175.59542 * 7 6 5 10 10 C 1.39363 * 119.31812 * 0.50008 * 6 5 4 11 11 N 1.38986 * 119.62897 * 179.77115 * 10 6 5 12 12 C 1.46903 * 110.99667 * 239.15289 * 11 10 6 13 13 C 1.50696 * 109.46975 * 67.72972 * 12 11 10 14 14 H 1.08001 * 120.00484 * 4.30348 * 13 12 11 15 15 C 1.37884 * 120.00168 * 184.30042 * 13 12 11 16 16 N 1.31510 * 119.99718 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00117 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46812 * 60.00325 * 17 15 13 19 19 H 1.48501 * 109.46878 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46996 * 300.00170 * 17 15 13 21 21 C 1.46907 * 111.00248 * 115.20300 * 11 10 6 22 22 C 1.50697 * 109.47011 * 190.00000 * 21 11 10 23 23 C 1.38669 * 120.41700 * 270.30055 * 22 21 11 24 24 C 1.38630 * 118.42173 * 180.26461 * 23 22 21 25 25 C 1.38230 * 119.15884 * 359.43840 * 24 23 22 26 26 N 1.31854 * 120.76213 * 0.29615 * 25 24 23 27 27 C 1.31886 * 121.72996 * 359.97438 * 26 25 24 28 28 N 1.32141 * 120.73953 * 359.49220 * 10 6 5 29 29 H 1.07990 * 120.39457 * 359.95089 * 4 3 2 30 30 H 1.08000 * 120.69653 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.46961 * 187.72595 * 12 11 10 32 32 H 1.08996 * 109.47045 * 307.72516 * 12 11 10 33 33 H 0.96999 * 120.00165 * 180.02562 * 16 15 13 34 34 H 1.09000 * 109.46746 * 69.99656 * 21 11 10 35 35 H 1.09000 * 109.46806 * 309.99799 * 21 11 10 36 36 H 1.07998 * 120.79168 * 359.97438 * 23 22 21 37 37 H 1.08001 * 120.42376 * 179.71305 * 24 23 22 38 38 H 1.08002 * 119.61928 * 180.27535 * 25 24 23 39 39 H 1.07993 * 119.62058 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2582 -0.4226 -1.1335 5 6 4.6451 -0.4174 -1.1228 6 6 5.2971 0.0156 0.0182 7 7 6.7761 0.0422 0.0697 8 8 7.4260 -0.3930 -0.8641 9 8 7.3434 0.4993 1.0459 10 6 4.5469 0.4214 1.1204 11 7 5.1951 0.8530 2.2715 12 6 4.8246 0.0242 3.4265 13 6 5.3787 -1.3655 3.2459 14 1 6.0070 -1.5902 2.3967 15 6 5.0836 -2.3502 4.1648 16 7 4.3182 -2.0767 5.1986 17 14 5.7699 -4.0730 3.9405 18 1 7.2540 -4.0181 3.9376 19 1 5.3093 -4.9384 5.0559 20 1 5.2927 -4.6318 2.6501 21 6 4.9178 2.2721 2.5314 22 6 5.8203 2.7670 3.6320 23 6 5.4222 2.6826 4.9576 24 6 6.2827 3.1554 5.9364 25 6 7.5052 3.6807 5.5618 26 7 7.8530 3.7400 4.2913 27 6 7.0578 3.3047 3.3334 28 7 3.2261 0.4056 1.0813 29 1 2.7198 -0.7512 -2.0101 30 1 5.2043 -0.7402 -1.9886 31 1 5.2350 0.4637 4.3356 32 1 3.7386 -0.0249 3.5049 33 1 4.1108 -2.7693 5.8453 34 1 3.8773 2.3893 2.8343 35 1 5.0997 2.8496 1.6250 36 1 4.4626 2.2629 5.2211 37 1 6.0034 3.1098 6.9786 38 1 8.1832 4.0470 6.3184 39 1 7.3769 3.3702 2.3038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164006500.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:47 Heat of formation + Delta-G solvation = 135.431749 kcal Electronic energy + Delta-G solvation = -29202.045413 eV Core-core repulsion = 25114.776965 eV Total energy + Delta-G solvation = -4087.268448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.90878 -40.62898 -39.81670 -37.46281 -36.50825 -35.89189 -33.25864 -32.96542 -32.64668 -31.54173 -30.46340 -27.72113 -27.15401 -25.59822 -23.97114 -23.33270 -23.10934 -22.15278 -20.88176 -19.57089 -19.05124 -18.34954 -17.26971 -17.01494 -16.76213 -16.24369 -15.95195 -15.73685 -15.44900 -14.71341 -14.66220 -14.52060 -14.15751 -13.79571 -13.41413 -13.26951 -13.09763 -13.05371 -12.85954 -12.70935 -12.61515 -12.13284 -11.62804 -11.20883 -11.10668 -10.90815 -10.86145 -10.76533 -10.58265 -10.47256 -10.29975 -10.11617 -9.69125 -9.47925 -9.31070 -9.11377 -8.69537 -8.64908 -8.03112 -6.23614 -4.26043 -0.37074 0.68192 1.36566 1.43785 1.64998 1.69062 2.21600 2.53544 3.11469 3.20935 3.26141 3.30065 3.48227 3.67399 4.21105 4.26592 4.28063 4.35146 4.49880 4.74690 4.89777 5.03297 5.13838 5.14562 5.18696 5.28540 5.30176 5.36648 5.55972 5.67699 5.77394 5.94647 6.10668 6.45914 6.59687 6.66181 6.78210 6.96329 7.02612 7.03645 7.30210 7.39252 7.61270 7.78921 8.10342 8.14757 8.30407 8.76508 9.38370 10.86263 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.007663 B = 0.005388 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3653.103316 B = 5195.574539 C = 6093.419932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C 0.266 3.734 3 C 0.253 3.747 4 C -0.144 4.144 5 C -0.006 4.006 6 C -0.057 4.057 7 N 0.031 4.969 8 O -0.209 6.209 9 O -0.064 6.064 10 C 0.419 3.581 11 N -0.476 5.476 12 C 0.192 3.808 13 C -0.517 4.517 14 H 0.055 0.945 15 C 0.066 3.934 16 N -0.888 5.888 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.278 1.278 21 C 0.106 3.894 22 C -0.119 4.119 23 C -0.053 4.053 24 C -0.176 4.176 25 C 0.094 3.906 26 N -0.491 5.491 27 C 0.127 3.873 28 N -0.467 5.467 29 H 0.164 0.836 30 H 0.173 0.827 31 H 0.053 0.947 32 H 0.019 0.981 33 H 0.265 0.735 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.149 0.851 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.517 8.608 -8.559 12.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.049 5.049 2 C -0.052 4.052 3 C 0.112 3.888 4 C -0.168 4.168 5 C -0.033 4.033 6 C -0.145 4.145 7 N 0.556 4.444 8 O -0.408 6.408 9 O -0.302 6.302 10 C 0.188 3.812 11 N -0.200 5.200 12 C 0.070 3.930 13 C -0.556 4.556 14 H 0.073 0.927 15 C -0.137 4.137 16 N -0.526 5.526 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.204 1.204 21 C -0.021 4.021 22 C -0.122 4.122 23 C -0.079 4.079 24 C -0.196 4.196 25 C -0.063 4.063 26 N -0.199 5.199 27 C -0.030 4.030 28 N -0.182 5.182 29 H 0.181 0.819 30 H 0.190 0.810 31 H 0.071 0.929 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.167 0.833 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.194 9.018 -8.097 12.316 hybrid contribution -0.115 -1.917 -0.119 1.924 sum -2.308 7.101 -8.215 11.101 Atomic orbital electron populations 1.81246 1.11268 1.05973 1.06427 1.24828 0.91466 0.94802 0.94138 1.16567 0.86508 0.95229 0.90542 1.21887 0.93165 1.02222 0.99480 1.21390 0.94100 0.90893 0.96910 1.22216 0.82440 1.11728 0.98124 1.43049 1.02071 0.99068 1.00255 1.94496 1.64824 1.51095 1.30342 1.94684 1.71013 1.42727 1.21798 1.19617 0.84823 0.86120 0.90680 1.60887 1.52344 1.02947 1.03796 1.20131 0.96033 0.91337 0.85527 1.20924 1.30977 0.93629 1.10037 0.92676 1.24876 0.94857 0.98993 0.95005 1.69904 1.36183 1.34140 1.12389 0.86626 0.79948 0.83718 0.77701 1.19678 1.20954 1.20398 1.20885 0.97016 0.87620 0.96540 1.20496 0.97013 1.00086 0.94582 1.21565 1.00022 0.94127 0.92198 1.22051 0.95957 1.01115 1.00457 1.22660 0.94507 0.96002 0.93175 1.67678 1.34194 1.16964 1.01111 1.22541 0.88981 0.92770 0.98715 1.68265 1.09356 1.15440 1.25098 0.81858 0.80995 0.92925 0.96269 0.92531 0.92453 0.90733 0.84810 0.85152 0.83326 0.82944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -5.47 18.54 41.84 0.78 -4.69 16 2 C 0.27 3.55 15.53 -22.47 -0.35 3.20 16 3 C 0.25 3.32 6.58 -85.09 -0.56 2.76 16 4 C -0.14 -1.40 9.79 -39.02 -0.38 -1.79 16 5 C -0.01 -0.07 9.65 -39.36 -0.38 -0.45 16 6 C -0.06 -0.89 6.89 -79.48 -0.55 -1.44 16 7 N 0.03 0.56 4.45 34.19 0.15 0.71 16 8 O -0.21 -3.61 18.52 -29.46 -0.55 -4.15 16 9 O -0.06 -1.26 17.14 -29.46 -0.50 -1.77 16 10 C 0.42 7.32 4.60 -155.17 -0.71 6.60 16 11 N -0.48 -9.03 2.37 -175.93 -0.42 -9.45 16 12 C 0.19 4.45 4.47 -4.98 -0.02 4.43 16 13 C -0.52 -13.61 8.72 -34.44 -0.30 -13.91 16 14 H 0.06 1.48 7.75 -52.49 -0.41 1.08 16 15 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -24.78 13.29 55.43 0.74 -24.04 16 17 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C 0.11 1.66 4.94 -4.97 -0.02 1.64 16 22 C -0.12 -1.89 4.93 -104.48 -0.52 -2.41 16 23 C -0.05 -0.82 8.01 -39.28 -0.31 -1.14 16 24 C -0.18 -2.47 10.11 -39.44 -0.40 -2.86 16 25 C 0.09 1.32 11.18 -17.54 -0.20 1.12 16 26 N -0.49 -7.85 10.36 -13.25 -0.14 -7.98 16 27 C 0.13 1.99 10.86 -17.55 -0.19 1.80 16 28 N -0.47 -7.74 9.45 -10.35 -0.10 -7.83 16 29 H 0.16 0.91 8.06 -52.49 -0.42 0.48 16 30 H 0.17 1.43 7.69 -52.49 -0.40 1.02 16 31 H 0.05 1.28 5.37 -51.93 -0.28 1.00 16 32 H 0.02 0.49 7.61 -51.93 -0.40 0.09 16 33 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.06 0.89 8.07 -51.93 -0.42 0.47 16 35 H 0.07 1.00 8.01 -51.93 -0.42 0.58 16 36 H 0.13 2.09 7.84 -52.49 -0.41 1.68 16 37 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.15 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 359.58 15.07 5.42 5.42 Total: -1.00 -31.45 359.58 -8.19 -39.64 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -3.56 Total: -1.29 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -4.99 Total: -0.76 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 1.01 Total: -53.29 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -1.05 Total: -5.92 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.45 -8.19 -39.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164006500.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.070 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds