Wall clock time and date at job start Tue Mar 31 2020 22:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39297 * 119.69244 * 69.51094 * 3 2 1 5 5 C 1.38697 * 119.21301 * 179.97438 * 4 3 2 6 6 C 1.38369 * 118.59967 * 359.74374 * 5 4 3 7 7 N 1.48015 * 120.33926 * 180.24671 * 6 5 4 8 8 O 1.21806 * 120.00393 * 355.59513 * 7 6 5 9 9 O 1.21807 * 120.00162 * 175.59542 * 7 6 5 10 10 C 1.39363 * 119.31812 * 0.50008 * 6 5 4 11 11 N 1.38986 * 119.62897 * 179.77115 * 10 6 5 12 12 C 1.46903 * 110.99667 * 239.15289 * 11 10 6 13 13 C 1.50696 * 109.46975 * 67.72972 * 12 11 10 14 14 H 1.08001 * 120.00484 * 4.30348 * 13 12 11 15 15 C 1.37884 * 120.00168 * 184.30042 * 13 12 11 16 16 N 1.31510 * 119.99718 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00117 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46812 * 60.00325 * 17 15 13 19 19 H 1.48501 * 109.46878 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46996 * 300.00170 * 17 15 13 21 21 C 1.46907 * 111.00248 * 115.20300 * 11 10 6 22 22 C 1.50697 * 109.47011 * 190.00000 * 21 11 10 23 23 C 1.38669 * 120.41700 * 270.30055 * 22 21 11 24 24 C 1.38630 * 118.42173 * 180.26461 * 23 22 21 25 25 C 1.38230 * 119.15884 * 359.43840 * 24 23 22 26 26 N 1.31854 * 120.76213 * 0.29615 * 25 24 23 27 27 C 1.31886 * 121.72996 * 359.97438 * 26 25 24 28 28 N 1.32141 * 120.73953 * 359.49220 * 10 6 5 29 29 H 1.07990 * 120.39457 * 359.95089 * 4 3 2 30 30 H 1.08000 * 120.69653 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.46961 * 187.72595 * 12 11 10 32 32 H 1.08996 * 109.47045 * 307.72516 * 12 11 10 33 33 H 0.96999 * 120.00165 * 180.02562 * 16 15 13 34 34 H 1.09000 * 109.46746 * 69.99656 * 21 11 10 35 35 H 1.09000 * 109.46806 * 309.99799 * 21 11 10 36 36 H 1.07998 * 120.79168 * 359.97438 * 23 22 21 37 37 H 1.08001 * 120.42376 * 179.71305 * 24 23 22 38 38 H 1.08002 * 119.61928 * 180.27535 * 25 24 23 39 39 H 1.07993 * 119.62058 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2582 -0.4226 -1.1335 5 6 4.6451 -0.4174 -1.1228 6 6 5.2971 0.0156 0.0182 7 7 6.7761 0.0422 0.0697 8 8 7.4260 -0.3930 -0.8641 9 8 7.3434 0.4993 1.0459 10 6 4.5469 0.4214 1.1204 11 7 5.1951 0.8530 2.2715 12 6 4.8246 0.0242 3.4265 13 6 5.3787 -1.3655 3.2459 14 1 6.0070 -1.5902 2.3967 15 6 5.0836 -2.3502 4.1648 16 7 4.3182 -2.0767 5.1986 17 14 5.7699 -4.0730 3.9405 18 1 7.2540 -4.0181 3.9376 19 1 5.3093 -4.9384 5.0559 20 1 5.2927 -4.6318 2.6501 21 6 4.9178 2.2721 2.5314 22 6 5.8203 2.7670 3.6320 23 6 5.4222 2.6826 4.9576 24 6 6.2827 3.1554 5.9364 25 6 7.5052 3.6807 5.5618 26 7 7.8530 3.7400 4.2913 27 6 7.0578 3.3047 3.3334 28 7 3.2261 0.4056 1.0813 29 1 2.7198 -0.7512 -2.0101 30 1 5.2043 -0.7402 -1.9886 31 1 5.2350 0.4637 4.3356 32 1 3.7386 -0.0249 3.5049 33 1 4.1108 -2.7693 5.8453 34 1 3.8773 2.3893 2.8343 35 1 5.0997 2.8496 1.6250 36 1 4.4626 2.2629 5.2211 37 1 6.0034 3.1098 6.9786 38 1 8.1832 4.0470 6.3184 39 1 7.3769 3.3702 2.3038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164006500.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:46 Heat of formation + Delta-G solvation = 117.690356 kcal Electronic energy + Delta-G solvation = -29202.814737 eV Core-core repulsion = 25114.776965 eV Total energy + Delta-G solvation = -4088.037773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.17940 -41.85554 -40.99685 -38.73709 -37.68234 -37.23625 -34.90188 -34.37574 -33.87206 -32.70782 -31.76688 -29.44308 -28.35801 -26.89625 -25.53721 -24.55599 -24.31217 -23.51085 -22.17205 -20.77341 -20.25794 -19.62320 -18.87713 -18.38027 -17.96655 -17.71887 -17.22385 -17.06519 -16.84712 -16.33484 -15.82004 -15.50380 -15.32671 -15.00825 -14.72060 -14.52873 -14.30778 -14.14208 -14.03144 -14.01297 -14.00201 -13.77720 -13.32374 -12.79014 -12.70983 -12.48935 -12.38244 -12.20131 -12.04706 -11.92217 -11.59099 -11.50251 -11.33389 -10.76688 -10.64442 -10.49059 -10.33091 -9.90051 -9.51193 -8.28454 -6.36311 -1.52944 -0.33075 0.08180 0.25291 0.43264 0.46046 1.12168 1.30531 1.34361 1.40845 1.41331 2.05123 2.28770 2.40141 2.49677 3.02543 3.06750 3.26389 3.30899 3.48345 3.62158 3.73715 3.87062 3.96279 4.13594 4.17620 4.19337 4.41154 4.46744 4.53992 4.76509 4.80683 4.95629 5.03782 5.14937 5.27507 5.37773 5.42088 5.48250 5.84820 5.88127 5.94855 6.05702 6.20125 6.25828 6.72312 6.77913 7.11789 7.31241 8.81185 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.007663 B = 0.005388 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3653.103316 B = 5195.574539 C = 6093.419932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C 0.283 3.717 3 C 0.241 3.759 4 C -0.102 4.102 5 C 0.011 3.989 6 C -0.072 4.072 7 N 0.034 4.966 8 O -0.177 6.177 9 O -0.131 6.131 10 C 0.393 3.607 11 N -0.480 5.480 12 C 0.215 3.785 13 C -0.522 4.522 14 H 0.045 0.955 15 C 0.018 3.982 16 N -0.918 5.918 17 Si 0.945 3.055 18 H -0.273 1.273 19 H -0.278 1.278 20 H -0.270 1.270 21 C 0.111 3.889 22 C -0.131 4.131 23 C -0.071 4.071 24 C -0.175 4.175 25 C 0.092 3.908 26 N -0.509 5.509 27 C 0.120 3.880 28 N -0.498 5.498 29 H 0.221 0.779 30 H 0.214 0.786 31 H 0.035 0.965 32 H -0.010 1.010 33 H 0.265 0.735 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.156 0.844 38 H 0.183 0.817 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.426 7.866 -11.080 13.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.073 5.073 2 C -0.035 4.035 3 C 0.101 3.899 4 C -0.124 4.124 5 C -0.015 4.015 6 C -0.160 4.160 7 N 0.554 4.446 8 O -0.387 6.387 9 O -0.353 6.353 10 C 0.161 3.839 11 N -0.203 5.203 12 C 0.091 3.909 13 C -0.561 4.561 14 H 0.063 0.937 15 C -0.182 4.182 16 N -0.558 5.558 17 Si 0.771 3.229 18 H -0.198 1.198 19 H -0.203 1.203 20 H -0.195 1.195 21 C -0.015 4.015 22 C -0.133 4.133 23 C -0.097 4.097 24 C -0.194 4.194 25 C -0.065 4.065 26 N -0.218 5.218 27 C -0.037 4.037 28 N -0.213 5.213 29 H 0.237 0.763 30 H 0.231 0.769 31 H 0.053 0.947 32 H 0.008 0.992 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.142 0.858 37 H 0.174 0.826 38 H 0.200 0.800 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.102 8.345 -10.521 13.592 hybrid contribution -0.210 -1.686 0.473 1.764 sum -2.311 6.659 -10.048 12.274 Atomic orbital electron populations 1.81272 1.11935 1.06888 1.07174 1.24783 0.91313 0.94003 0.93415 1.16832 0.86280 0.95777 0.91035 1.22461 0.92412 0.98158 0.99415 1.21970 0.94665 0.88698 0.96213 1.22406 0.80920 1.13218 0.99485 1.43314 1.03042 0.98406 0.99831 1.94440 1.65592 1.49031 1.29666 1.94712 1.71942 1.45852 1.22823 1.19514 0.85344 0.88235 0.90793 1.60642 1.53093 1.03619 1.02992 1.19576 0.93578 0.90824 0.86879 1.21170 1.30328 0.95179 1.09408 0.93651 1.25596 0.95302 1.02326 0.94927 1.70007 1.37531 1.35054 1.13164 0.85794 0.79063 0.80040 0.78027 1.19846 1.20331 1.19539 1.20900 0.96652 0.86465 0.97503 1.20563 0.97385 1.00582 0.94760 1.21678 1.00274 0.94888 0.92892 1.22353 0.95603 1.00114 1.01374 1.23224 0.94931 0.95146 0.93223 1.67715 1.34524 1.17549 1.01969 1.22684 0.88875 0.92853 0.99296 1.68078 1.09224 1.16718 1.27256 0.76258 0.76942 0.94743 0.99217 0.92587 0.93045 0.88684 0.85765 0.82628 0.80006 0.82124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -11.09 18.54 19.00 0.35 -10.74 16 2 C 0.28 7.05 15.53 88.33 1.37 8.42 16 3 C 0.24 5.79 6.58 40.48 0.27 6.06 16 4 C -0.10 -1.49 9.79 22.63 0.22 -1.27 16 5 C 0.01 0.20 9.65 22.41 0.22 0.41 16 6 C -0.07 -2.15 6.89 36.68 0.25 -1.89 16 7 N 0.03 1.19 4.45 -45.74 -0.20 0.98 16 8 O -0.18 -5.70 18.52 18.88 0.35 -5.35 16 9 O -0.13 -5.29 17.14 18.88 0.32 -4.96 16 10 C 0.39 13.75 4.60 133.20 0.61 14.36 16 11 N -0.48 -18.95 2.37 -710.52 -1.68 -20.63 16 12 C 0.22 10.50 4.47 85.56 0.38 10.89 16 13 C -0.52 -28.28 8.72 25.60 0.22 -28.05 16 14 H 0.05 2.50 7.75 -2.91 -0.02 2.47 16 15 C 0.02 1.01 5.46 84.66 0.46 1.48 16 16 N -0.92 -52.63 13.29 21.45 0.28 -52.34 16 17 Si 0.95 43.70 29.54 68.60 2.03 45.73 16 18 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 C 0.11 3.66 4.94 85.55 0.42 4.08 16 22 C -0.13 -4.35 4.93 -19.77 -0.10 -4.44 16 23 C -0.07 -2.33 8.01 22.47 0.18 -2.15 16 24 C -0.17 -4.92 10.11 22.36 0.23 -4.69 16 25 C 0.09 2.53 11.18 84.69 0.95 3.47 16 26 N -0.51 -16.35 10.36 -195.84 -2.03 -18.38 16 27 C 0.12 3.86 10.86 84.67 0.92 4.78 16 28 N -0.50 -16.41 9.45 -186.65 -1.76 -18.17 16 29 H 0.22 0.81 8.06 -2.92 -0.02 0.79 16 30 H 0.21 2.16 7.69 -2.91 -0.02 2.14 16 31 H 0.03 1.79 5.37 -2.39 -0.01 1.78 16 32 H -0.01 -0.54 7.61 -2.39 -0.02 -0.56 16 33 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 34 H 0.05 1.72 8.07 -2.39 -0.02 1.70 16 35 H 0.09 2.65 8.01 -2.39 -0.02 2.63 16 36 H 0.12 4.23 7.84 -2.91 -0.02 4.20 16 37 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 38 H 0.18 3.64 8.06 -2.91 -0.02 3.62 16 39 H 0.16 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -72.14 359.58 5.38 -66.76 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 1.12 Total: 5.64 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 6.61 Total: 11.46 kcal Atomic # 7 Polarization: -114.24 SS G_CDS: -5.04 Total: -119.28 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.67 Total: -10.31 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -72.14 5.38 -66.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164006500.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.446 kcal (2) G-P(sol) polarization free energy of solvation -72.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds