Wall clock time and date at job start Tue Mar 31 2020 22:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.43199 * 120.00044 * 84.29658 * 3 2 1 5 5 N 3.51036 * 140.68733 * 84.29225 * 2 1 3 6 6 C 1.41127 * 120.00124 * 264.29387 * 3 2 1 7 7 C 1.38955 * 119.99735 * 5.26299 * 6 3 2 8 8 H 1.08000 * 119.99922 * 342.09243 * 7 6 3 9 9 C 1.40868 * 119.99805 * 162.09321 * 7 6 3 10 10 N 1.30320 * 119.99782 * 349.57161 * 9 7 6 11 11 Si 1.86798 * 119.99970 * 169.56881 * 9 7 6 12 12 H 1.48502 * 109.46975 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47182 * 120.00117 * 11 9 7 14 14 H 1.48494 * 109.47179 * 240.00163 * 11 9 7 15 15 N 1.38429 * 120.00452 * 185.26264 * 6 3 2 16 16 C 1.38566 * 120.00091 * 118.85961 * 15 6 3 17 17 C 1.39871 * 119.98840 * 353.75097 * 16 15 6 18 18 N 1.31457 * 120.01728 * 179.70715 * 17 16 15 19 19 C 1.33300 * 120.00530 * 0.56824 * 18 17 16 20 20 C 1.47715 * 120.01350 * 179.68512 * 19 18 17 21 21 O 1.21478 * 120.00548 * 180.02562 * 20 19 18 22 22 O 1.34738 * 119.99749 * 0.02562 * 20 19 18 23 23 C 1.45197 * 116.99754 * 179.97438 * 22 20 19 24 24 C 1.53000 * 109.47133 * 179.97438 * 23 22 20 25 25 C 1.53001 * 117.50025 * 243.75157 * 24 23 22 26 26 C 1.52994 * 117.50456 * 175.08954 * 24 23 22 27 27 C 1.39479 * 119.98188 * 359.70784 * 19 18 17 28 28 N 1.32023 * 119.97668 * 359.97438 * 27 19 18 29 29 H 0.97005 * 119.99449 * 185.03892 * 10 9 7 30 30 H 0.97004 * 119.99807 * 298.59001 * 15 6 3 31 31 H 1.08003 * 119.99306 * 0.02562 * 17 16 15 32 32 H 1.08997 * 109.47707 * 300.00026 * 23 22 20 33 33 H 1.09008 * 109.47252 * 60.00133 * 23 22 20 34 34 H 1.09003 * 115.54586 * 29.41672 * 24 23 22 35 35 H 1.08993 * 117.49879 * 359.97438 * 25 24 23 36 36 H 1.09005 * 117.49315 * 145.01923 * 25 24 23 37 37 H 1.09000 * 117.50480 * 214.98346 * 26 24 23 38 38 H 1.09001 * 117.49624 * 359.97438 * 26 24 23 39 39 H 1.07997 * 120.01215 * 180.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2841 -0.1223 -1.2340 5 7 3.8520 -0.2212 -2.2130 6 6 3.2737 0.1225 1.2161 7 6 2.5832 0.1317 2.4220 8 1 1.5229 0.3363 2.4355 9 6 3.2664 -0.1257 3.6267 10 7 4.4913 -0.5699 3.5991 11 14 2.4167 0.1697 5.2638 12 1 1.0400 0.6719 5.0234 13 1 2.3539 -1.1033 6.0257 14 1 3.1810 1.1761 6.0437 15 7 4.6535 0.2328 1.2078 16 6 5.2612 1.3652 1.7259 17 6 4.4813 2.4511 2.1369 18 7 5.0569 3.5234 2.6339 19 6 6.3848 3.5807 2.7357 20 6 7.0321 4.7883 3.2876 21 8 8.2422 4.8405 3.3799 22 8 6.2803 5.8320 3.6887 23 6 6.9838 6.9850 4.2213 24 6 5.9715 8.0607 4.6201 25 6 6.0187 9.3902 3.8643 26 6 6.5090 9.3148 5.3124 27 6 7.1629 2.5001 2.3205 28 7 6.5838 1.4211 1.8274 29 1 4.9365 -0.8165 4.4249 30 1 5.1952 -0.4844 0.8428 31 1 3.4057 2.4066 2.0508 32 1 7.5609 6.6864 5.0964 33 1 7.6563 7.3833 3.4614 34 1 4.9938 7.6935 4.9321 35 1 6.7711 9.4986 3.0833 36 1 5.0719 9.8978 3.6794 37 1 5.8847 9.7729 6.0796 38 1 7.5838 9.3733 5.4841 39 1 8.2388 2.5458 2.4032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169078524.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:49 Heat of formation + Delta-G solvation = 51.208728 kcal Electronic energy + Delta-G solvation = -27498.994661 eV Core-core repulsion = 23408.074029 eV Total energy + Delta-G solvation = -4090.920632 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.02188 -39.97940 -37.96571 -37.59087 -36.01592 -35.53372 -34.91127 -34.32441 -33.52032 -31.41981 -29.69268 -27.91086 -27.45051 -24.61712 -24.32577 -22.69680 -21.99259 -21.21155 -20.95544 -19.40525 -18.44914 -17.60108 -17.51807 -17.10332 -16.52214 -16.41986 -16.33770 -15.58577 -15.21461 -14.67170 -14.52995 -14.32119 -13.95737 -13.66525 -13.34873 -12.97490 -12.77896 -12.73594 -12.51006 -11.98324 -11.91312 -11.85759 -11.80971 -11.71780 -11.60272 -11.41481 -11.25633 -11.11547 -11.09477 -11.04178 -10.91588 -10.78150 -10.57886 -10.35127 -10.17241 -10.12720 -8.93164 -8.56937 -8.06875 -7.35756 -5.70691 0.76654 1.48128 1.86468 2.55093 2.57013 2.63213 2.68810 2.74900 3.23430 3.32847 3.50273 3.68900 3.89162 3.93586 4.11646 4.17648 4.25742 4.49718 4.57819 4.64203 4.71419 4.82364 4.96377 4.99986 5.11442 5.27568 5.32804 5.33662 5.34391 5.44596 5.58479 5.79914 5.86989 5.91215 5.95091 6.09377 6.33504 6.45351 6.75853 6.88094 7.28626 7.34750 7.52579 7.72726 7.80670 8.00080 8.30641 8.77312 8.90453 8.95496 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.003145 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.840915 B = 8899.506197 C = 9410.868717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C 0.323 3.677 3 C -0.300 4.300 4 C 0.304 3.696 5 N -0.523 5.523 6 C 0.360 3.640 7 C -0.366 4.366 8 H 0.122 0.878 9 C 0.064 3.936 10 N -0.715 5.715 11 Si 0.924 3.076 12 H -0.243 1.243 13 H -0.260 1.260 14 H -0.259 1.259 15 N -0.608 5.608 16 C 0.431 3.569 17 C 0.009 3.991 18 N -0.359 5.359 19 C -0.074 4.074 20 C 0.544 3.456 21 O -0.518 6.518 22 O -0.332 6.332 23 C 0.096 3.904 24 C -0.156 4.156 25 C -0.176 4.176 26 C -0.171 4.171 27 C 0.181 3.819 28 N -0.511 5.511 29 H 0.307 0.693 30 H 0.413 0.587 31 H 0.183 0.817 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.107 10.705 10.159 15.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.204 5.204 2 C 0.014 3.986 3 C -0.318 4.318 4 C -0.004 4.004 5 N -0.205 5.205 6 C 0.257 3.743 7 C -0.393 4.393 8 H 0.139 0.861 9 C -0.168 4.168 10 N -0.333 5.333 11 Si 0.745 3.255 12 H -0.165 1.165 13 H -0.184 1.184 14 H -0.183 1.183 15 N -0.228 5.228 16 C 0.188 3.812 17 C -0.167 4.167 18 N -0.074 5.074 19 C -0.210 4.210 20 C 0.388 3.612 21 O -0.407 6.407 22 O -0.247 6.247 23 C 0.022 3.978 24 C -0.174 4.174 25 C -0.213 4.213 26 C -0.208 4.208 27 C 0.017 3.983 28 N -0.232 5.232 29 H 0.119 0.881 30 H 0.252 0.748 31 H 0.200 0.800 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.138 0.862 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.737 10.591 8.821 14.930 hybrid contribution 0.430 -0.349 1.066 1.202 sum 6.167 10.242 9.887 15.514 Atomic orbital electron populations 1.81099 1.12076 1.18725 1.08499 1.24576 0.91163 0.90534 0.92307 1.12738 0.83131 1.49674 0.86236 1.25154 0.92662 0.90611 0.91933 1.81109 1.09543 1.19033 1.10808 1.16788 0.78958 0.87579 0.91000 1.20509 0.98545 1.30610 0.89621 0.86057 1.26630 0.94578 0.91926 1.03665 1.69490 1.10483 1.19570 1.33768 0.85864 0.81523 0.80240 0.77904 1.16501 1.18407 1.18288 1.41246 1.05374 1.17182 1.59005 1.19352 0.89145 0.87167 0.85495 1.23541 1.02276 0.88826 1.02072 1.68197 1.09450 1.23738 1.05998 1.20328 0.91491 0.95561 1.13635 1.20479 0.84682 0.82051 0.73993 1.90817 1.14675 1.81655 1.53529 1.86679 1.40391 1.24730 1.72944 1.22535 0.93278 0.83377 0.98570 1.22135 1.01422 0.88488 1.05379 1.23118 1.03414 0.99863 0.94879 1.23004 1.01684 1.00071 0.96062 1.23312 1.01114 0.86039 0.87804 1.68130 1.09183 1.25536 1.20393 0.88065 0.74800 0.80002 0.90806 0.91104 0.86215 0.88537 0.88315 0.88174 0.88542 0.80831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -11.42 18.54 41.84 0.78 -10.65 16 2 C 0.32 6.70 13.88 -22.47 -0.31 6.38 16 3 C -0.30 -5.89 5.88 -104.95 -0.62 -6.51 16 4 C 0.30 6.36 14.82 -22.47 -0.33 6.02 16 5 N -0.52 -11.61 18.54 41.84 0.78 -10.83 16 6 C 0.36 6.59 4.95 -83.52 -0.41 6.18 16 7 C -0.37 -6.51 7.03 -38.32 -0.27 -6.78 16 8 H 0.12 2.17 6.96 -52.49 -0.37 1.81 16 9 C 0.06 1.09 4.69 -17.20 -0.08 1.01 16 10 N -0.72 -12.39 10.82 55.60 0.60 -11.79 16 11 Si 0.92 13.63 29.58 -169.99 -5.03 8.60 16 12 H -0.24 -3.62 7.11 56.52 0.40 -3.22 16 13 H -0.26 -3.80 7.11 56.52 0.40 -3.40 16 14 H -0.26 -3.97 7.11 56.52 0.40 -3.56 16 15 N -0.61 -10.75 3.31 -9.61 -0.03 -10.78 16 16 C 0.43 7.65 6.00 -154.86 -0.93 6.72 16 17 C 0.01 0.16 9.68 -17.10 -0.17 -0.01 16 18 N -0.36 -6.33 10.26 -9.46 -0.10 -6.43 16 19 C -0.07 -1.23 6.74 -82.90 -0.56 -1.79 16 20 C 0.54 8.70 7.94 34.60 0.27 8.98 16 21 O -0.52 -8.56 16.12 -19.25 -0.31 -8.87 16 22 O -0.33 -4.95 10.05 -40.60 -0.41 -5.36 16 23 C 0.10 1.10 5.76 37.16 0.21 1.31 16 24 C -0.16 -1.48 6.06 -90.62 -0.55 -2.03 16 25 C -0.18 -1.40 10.18 -26.69 -0.27 -1.67 16 26 C -0.17 -1.24 10.25 -26.70 -0.27 -1.51 16 27 C 0.18 2.88 10.76 -17.01 -0.18 2.70 16 28 N -0.51 -8.85 10.52 -11.91 -0.13 -8.97 16 29 H 0.31 4.93 8.29 -40.82 -0.34 4.59 16 30 H 0.41 7.22 8.94 -40.82 -0.36 6.86 16 31 H 0.18 3.09 6.21 -52.48 -0.33 2.77 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.77 7.87 -51.92 -0.41 0.36 16 34 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.10 0.74 8.03 -51.93 -0.42 0.32 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.17 2.36 7.63 -52.49 -0.40 1.96 16 LS Contribution 368.33 15.07 5.55 5.55 Total: -1.00 -23.94 368.33 -6.30 -30.23 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -3.53 Total: 10.30 kcal Atomic # 6 Polarization: 23.47 SS G_CDS: -4.47 Total: 19.00 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 1.90 Total: -59.45 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.72 Total: -14.23 kcal Atomic # 14 Polarization: 13.63 SS G_CDS: -5.03 Total: 8.60 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -23.94 -6.30 -30.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169078524.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.441 kcal (2) G-P(sol) polarization free energy of solvation -23.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds