Wall clock time and date at job start Tue Mar 31 2020 22:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.43199 * 120.00044 * 84.29658 * 3 2 1 5 5 N 3.51036 * 140.68733 * 84.29225 * 2 1 3 6 6 C 1.41127 * 120.00124 * 264.29387 * 3 2 1 7 7 C 1.38955 * 119.99735 * 5.26299 * 6 3 2 8 8 H 1.08000 * 119.99922 * 342.09243 * 7 6 3 9 9 C 1.40868 * 119.99805 * 162.09321 * 7 6 3 10 10 N 1.30320 * 119.99782 * 349.57161 * 9 7 6 11 11 Si 1.86798 * 119.99970 * 169.56881 * 9 7 6 12 12 H 1.48502 * 109.46975 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47182 * 120.00117 * 11 9 7 14 14 H 1.48494 * 109.47179 * 240.00163 * 11 9 7 15 15 N 1.38429 * 120.00452 * 185.26264 * 6 3 2 16 16 C 1.38566 * 120.00091 * 118.85961 * 15 6 3 17 17 C 1.39871 * 119.98840 * 353.75097 * 16 15 6 18 18 N 1.31457 * 120.01728 * 179.70715 * 17 16 15 19 19 C 1.33300 * 120.00530 * 0.56824 * 18 17 16 20 20 C 1.47715 * 120.01350 * 179.68512 * 19 18 17 21 21 O 1.21478 * 120.00548 * 180.02562 * 20 19 18 22 22 O 1.34738 * 119.99749 * 0.02562 * 20 19 18 23 23 C 1.45197 * 116.99754 * 179.97438 * 22 20 19 24 24 C 1.53000 * 109.47133 * 179.97438 * 23 22 20 25 25 C 1.53001 * 117.50025 * 243.75157 * 24 23 22 26 26 C 1.52994 * 117.50456 * 175.08954 * 24 23 22 27 27 C 1.39479 * 119.98188 * 359.70784 * 19 18 17 28 28 N 1.32023 * 119.97668 * 359.97438 * 27 19 18 29 29 H 0.97005 * 119.99449 * 185.03892 * 10 9 7 30 30 H 0.97004 * 119.99807 * 298.59001 * 15 6 3 31 31 H 1.08003 * 119.99306 * 0.02562 * 17 16 15 32 32 H 1.08997 * 109.47707 * 300.00026 * 23 22 20 33 33 H 1.09008 * 109.47252 * 60.00133 * 23 22 20 34 34 H 1.09003 * 115.54586 * 29.41672 * 24 23 22 35 35 H 1.08993 * 117.49879 * 359.97438 * 25 24 23 36 36 H 1.09005 * 117.49315 * 145.01923 * 25 24 23 37 37 H 1.09000 * 117.50480 * 214.98346 * 26 24 23 38 38 H 1.09001 * 117.49624 * 359.97438 * 26 24 23 39 39 H 1.07997 * 120.01215 * 180.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2841 -0.1223 -1.2340 5 7 3.8520 -0.2212 -2.2130 6 6 3.2737 0.1225 1.2161 7 6 2.5832 0.1317 2.4220 8 1 1.5229 0.3363 2.4355 9 6 3.2664 -0.1257 3.6267 10 7 4.4913 -0.5699 3.5991 11 14 2.4167 0.1697 5.2638 12 1 1.0400 0.6719 5.0234 13 1 2.3539 -1.1033 6.0257 14 1 3.1810 1.1761 6.0437 15 7 4.6535 0.2328 1.2078 16 6 5.2612 1.3652 1.7259 17 6 4.4813 2.4511 2.1369 18 7 5.0569 3.5234 2.6339 19 6 6.3848 3.5807 2.7357 20 6 7.0321 4.7883 3.2876 21 8 8.2422 4.8405 3.3799 22 8 6.2803 5.8320 3.6887 23 6 6.9838 6.9850 4.2213 24 6 5.9715 8.0607 4.6201 25 6 6.0187 9.3902 3.8643 26 6 6.5090 9.3148 5.3124 27 6 7.1629 2.5001 2.3205 28 7 6.5838 1.4211 1.8274 29 1 4.9365 -0.8165 4.4249 30 1 5.1952 -0.4844 0.8428 31 1 3.4057 2.4066 2.0508 32 1 7.5609 6.6864 5.0964 33 1 7.6563 7.3833 3.4614 34 1 4.9938 7.6935 4.9321 35 1 6.7711 9.4986 3.0833 36 1 5.0719 9.8978 3.6794 37 1 5.8847 9.7729 6.0796 38 1 7.5838 9.3733 5.4841 39 1 8.2388 2.5458 2.4032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169078524.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:49 Heat of formation + Delta-G solvation = 40.863838 kcal Electronic energy + Delta-G solvation = -27499.443249 eV Core-core repulsion = 23408.074029 eV Total energy + Delta-G solvation = -4091.369220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.34515 -41.19395 -39.31128 -38.49277 -37.15270 -37.07421 -36.57106 -35.71008 -34.90329 -32.84877 -31.04535 -28.95044 -28.86582 -25.92502 -25.66751 -23.40566 -23.24802 -22.50526 -21.72457 -20.91365 -19.76093 -19.08498 -18.82453 -18.23671 -17.92458 -17.69017 -17.54916 -16.68259 -16.38487 -15.89568 -15.75620 -15.29167 -15.20716 -14.80395 -14.61177 -14.44913 -14.35193 -13.95009 -13.86012 -13.50025 -13.41363 -13.33029 -13.21768 -12.88694 -12.74251 -12.62263 -12.51290 -12.43481 -12.41656 -12.06849 -12.04285 -11.99554 -11.67123 -11.54223 -11.36804 -10.88478 -10.29244 -10.00328 -9.43310 -8.76055 -7.23513 -0.56345 0.13072 0.46479 1.33355 1.37745 1.44752 1.50475 1.53599 1.91787 2.02890 2.06001 2.22952 2.50969 2.52818 2.80386 2.82740 3.08745 3.32652 3.36564 3.47807 3.65754 3.80111 3.86325 3.93033 4.04124 4.16229 4.20313 4.40640 4.51788 4.52648 4.57722 4.59009 4.78204 5.00217 5.00991 5.13979 5.24294 5.28857 5.32903 5.45168 5.84350 5.93298 6.14314 6.36812 6.42580 6.70358 6.92145 7.15162 7.32397 7.55739 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.003145 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.840915 B = 8899.506197 C = 9410.868717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C 0.330 3.670 3 C -0.311 4.311 4 C 0.313 3.687 5 N -0.553 5.553 6 C 0.358 3.642 7 C -0.353 4.353 8 H 0.122 0.878 9 C 0.045 3.955 10 N -0.719 5.719 11 Si 0.972 3.028 12 H -0.244 1.244 13 H -0.253 1.253 14 H -0.265 1.265 15 N -0.607 5.607 16 C 0.425 3.575 17 C 0.001 3.999 18 N -0.367 5.367 19 C -0.079 4.079 20 C 0.546 3.454 21 O -0.525 6.525 22 O -0.343 6.343 23 C 0.092 3.908 24 C -0.176 4.176 25 C -0.177 4.177 26 C -0.153 4.153 27 C 0.184 3.816 28 N -0.518 5.518 29 H 0.315 0.685 30 H 0.413 0.587 31 H 0.185 0.815 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.714 11.664 11.974 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.230 5.230 2 C 0.023 3.977 3 C -0.330 4.330 4 C 0.007 3.993 5 N -0.236 5.236 6 C 0.255 3.745 7 C -0.380 4.380 8 H 0.140 0.860 9 C -0.187 4.187 10 N -0.337 5.337 11 Si 0.791 3.209 12 H -0.167 1.167 13 H -0.177 1.177 14 H -0.190 1.190 15 N -0.228 5.228 16 C 0.183 3.817 17 C -0.174 4.174 18 N -0.082 5.082 19 C -0.216 4.216 20 C 0.391 3.609 21 O -0.415 6.415 22 O -0.258 6.258 23 C 0.019 3.981 24 C -0.194 4.194 25 C -0.213 4.213 26 C -0.190 4.190 27 C 0.021 3.979 28 N -0.239 5.239 29 H 0.128 0.872 30 H 0.252 0.748 31 H 0.201 0.799 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.130 0.870 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.125 0.875 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 6.348 11.553 10.628 16.933 hybrid contribution 0.339 -0.569 0.648 0.927 sum 6.687 10.984 11.277 17.103 Atomic orbital electron populations 1.81094 1.12643 1.20149 1.09136 1.24690 0.91270 0.90005 0.91734 1.12705 0.82630 1.51336 0.86279 1.25305 0.92186 0.90009 0.91823 1.81101 1.10362 1.20648 1.11498 1.16723 0.79283 0.87865 0.90665 1.20695 0.98639 1.28709 0.89953 0.86037 1.27089 0.94882 0.91647 1.05076 1.69485 1.10846 1.18481 1.34877 0.85154 0.80486 0.80038 0.75186 1.16676 1.17713 1.18959 1.41159 1.05052 1.17281 1.59280 1.19404 0.89437 0.87143 0.85762 1.23560 1.02416 0.88917 1.02528 1.68186 1.10071 1.23794 1.06163 1.20582 0.91326 0.96244 1.13459 1.20334 0.84513 0.82190 0.73910 1.90806 1.14851 1.81884 1.53953 1.86665 1.41027 1.25319 1.72770 1.22802 0.93913 0.82653 0.98717 1.22105 1.00921 0.88754 1.07622 1.23218 1.03989 0.98517 0.95617 1.23122 1.02506 0.97505 0.95876 1.23675 1.02103 0.85319 0.86758 1.68161 1.09007 1.26160 1.20618 0.87177 0.74823 0.79860 0.90316 0.90678 0.87015 0.88270 0.87623 0.86793 0.87546 0.78508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -23.87 18.54 19.01 0.35 -23.52 16 2 C 0.33 13.67 13.88 88.33 1.23 14.90 16 3 C -0.31 -12.19 5.88 -20.08 -0.12 -12.31 16 4 C 0.31 13.15 14.82 88.33 1.31 14.46 16 5 N -0.55 -24.72 18.54 19.00 0.35 -24.37 16 6 C 0.36 12.93 4.95 38.98 0.19 13.12 16 7 C -0.35 -12.21 7.03 23.09 0.16 -12.05 16 8 H 0.12 4.22 6.96 -2.91 -0.02 4.20 16 9 C 0.05 1.45 4.69 85.56 0.40 1.85 16 10 N -0.72 -23.75 10.82 21.98 0.24 -23.52 16 11 Si 0.97 26.23 29.58 68.60 2.03 28.26 16 12 H -0.24 -6.66 7.11 99.48 0.71 -5.96 16 13 H -0.25 -6.60 7.11 99.48 0.71 -5.89 16 14 H -0.26 -7.45 7.11 99.48 0.71 -6.75 16 15 N -0.61 -21.18 3.31 -184.32 -0.61 -21.79 16 16 C 0.42 14.76 6.00 133.28 0.80 15.56 16 17 C 0.00 0.04 9.68 85.14 0.82 0.87 16 18 N -0.37 -12.68 10.26 -183.83 -1.89 -14.57 16 19 C -0.08 -2.58 6.74 41.73 0.28 -2.30 16 20 C 0.55 16.92 7.94 70.33 0.56 17.48 16 21 O -0.53 -16.66 16.12 19.91 0.32 -16.34 16 22 O -0.34 -9.93 10.05 -56.48 -0.57 -10.50 16 23 C 0.09 2.00 5.76 71.98 0.41 2.42 16 24 C -0.18 -3.10 6.06 -10.79 -0.07 -3.17 16 25 C -0.18 -2.50 10.18 30.62 0.31 -2.19 16 26 C -0.15 -1.86 10.25 30.62 0.31 -1.54 16 27 C 0.18 5.65 10.76 84.96 0.91 6.56 16 28 N -0.52 -17.40 10.52 -191.59 -2.02 -19.41 16 29 H 0.32 9.52 8.29 -92.70 -0.77 8.75 16 30 H 0.41 14.32 8.94 -92.71 -0.83 13.49 16 31 H 0.18 6.16 6.21 -2.91 -0.02 6.14 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 1.54 7.87 -2.38 -0.02 1.52 16 34 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.10 1.35 8.03 -2.39 -0.02 1.33 16 36 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.11 1.08 8.14 -2.39 -0.02 1.07 16 38 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.20 4.99 7.63 -2.91 -0.02 4.97 16 Total: -1.00 -49.20 368.33 6.07 -43.13 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.33 Total: 28.96 kcal Atomic # 6 Polarization: 46.14 SS G_CDS: 7.53 Total: 53.67 kcal Atomic # 7 Polarization: -123.61 SS G_CDS: -3.57 Total: -127.18 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.25 Total: -26.84 kcal Atomic # 14 Polarization: 26.23 SS G_CDS: 2.03 Total: 28.26 kcal Total: -49.20 6.07 -43.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169078524.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.995 kcal (2) G-P(sol) polarization free energy of solvation -49.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds