Wall clock time and date at job start Tue Mar 31 2020 22:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.44093 * 2 1 4 4 O 1.43037 * 109.45646 * 119.95521 * 2 1 3 5 5 C 1.35845 * 116.65923 * 166.15217 * 4 2 1 6 6 C 1.38425 * 120.82182 * 147.58151 * 5 4 2 7 7 C 1.39463 * 118.21009 * 180.31476 * 6 5 4 8 8 N 1.39926 * 120.41530 * 179.78524 * 7 6 5 9 9 C 1.38259 * 119.99921 * 187.38449 * 8 7 6 10 10 C 1.39018 * 119.99912 * 60.67426 * 9 8 7 11 11 H 1.07995 * 120.00326 * 198.65809 * 10 9 8 12 12 C 1.40826 * 119.99800 * 18.66266 * 10 9 8 13 13 N 1.30347 * 120.00158 * 9.54019 * 12 10 9 14 14 Si 1.86800 * 119.99914 * 189.54428 * 12 10 9 15 15 H 1.48498 * 109.47188 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47237 * 119.99782 * 14 12 10 17 17 H 1.48501 * 109.46987 * 239.99901 * 14 12 10 18 18 C 1.41165 * 120.00040 * 240.67156 * 9 8 7 19 19 C 1.43209 * 119.99928 * 174.74988 * 18 9 8 20 20 N 9.32995 * 166.88560 * 333.85979 * 4 1 2 21 21 C 1.43198 * 120.00558 * 354.47716 * 18 9 8 22 22 N 8.66135 * 126.38870 * 127.92380 * 2 1 3 23 23 C 1.38773 * 119.16592 * 359.51292 * 7 6 5 24 24 N 1.31960 * 120.98911 * 0.23245 * 23 7 6 25 25 C 1.32180 * 121.67908 * 0.02562 * 24 23 7 26 26 N 1.39990 * 120.48133 * 180.10399 * 25 24 23 27 27 C 1.35018 * 119.11421 * 195.41302 * 26 25 24 28 28 O 1.21284 * 120.07151 * 181.61749 * 27 26 25 29 29 H 1.08998 * 109.47233 * 300.04498 * 1 2 3 30 30 H 1.09004 * 109.46951 * 60.04398 * 1 2 3 31 31 H 1.08999 * 109.47185 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47290 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46781 * 299.95596 * 3 2 1 34 34 H 1.09000 * 109.46910 * 59.95251 * 3 2 1 35 35 H 1.08004 * 120.89243 * 0.08385 * 6 5 4 36 36 H 0.96997 * 120.00335 * 7.39199 * 8 7 6 37 37 H 0.96998 * 120.00059 * 184.98670 * 13 12 10 38 38 H 1.08003 * 119.50041 * 180.25471 * 23 7 6 39 39 H 0.96998 * 120.44533 * 15.37459 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0393 1.4428 0.0000 4 8 2.0065 -0.6734 1.1685 5 6 3.3209 -1.0161 1.1812 6 6 4.0376 -1.0351 2.3654 7 6 5.3857 -1.3886 2.3145 8 7 6.1548 -1.4185 3.4830 9 6 7.5205 -1.6198 3.4068 10 6 8.3179 -0.7194 2.7097 11 1 9.3074 -1.0101 2.3891 12 6 7.8355 0.5720 2.4217 13 7 6.7254 0.9888 2.9631 14 14 8.7863 1.6875 1.2637 15 1 10.0038 0.9836 0.7869 16 1 7.9308 2.0398 0.1021 17 1 9.1804 2.9260 1.9820 18 6 8.1052 -2.7396 4.0368 19 6 9.5009 -3.0103 3.8647 20 7 10.6080 -3.2250 3.7282 21 6 7.3041 -3.6016 4.8528 22 7 6.6685 -4.2854 5.5001 23 6 5.9533 -1.7158 1.0912 24 7 5.2384 -1.6921 -0.0177 25 6 3.9596 -1.3576 -0.0121 26 7 3.2242 -1.3429 -1.2032 27 6 2.0325 -0.7089 -1.2317 28 8 1.3674 -0.7104 -2.2459 29 1 -0.3633 0.5145 0.8896 30 1 -0.3633 0.5132 -0.8904 31 1 -0.3633 -1.0277 0.0005 32 1 3.1292 1.4434 0.0005 33 1 1.6763 1.9562 -0.8904 34 1 1.6750 1.9566 0.8896 35 1 3.5663 -0.7794 3.3029 36 1 5.7298 -1.2982 4.3466 37 1 6.3552 1.8487 2.7096 38 1 6.9959 -1.9944 1.0461 39 1 3.5665 -1.7819 -1.9976 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169083028.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:01 Heat of formation + Delta-G solvation = 31.143372 kcal Electronic energy + Delta-G solvation = -28851.131215 eV Core-core repulsion = 24759.340483 eV Total energy + Delta-G solvation = -4091.790731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.71154 -39.66618 -38.24007 -37.43962 -35.59972 -34.89493 -34.76183 -33.65918 -33.51273 -31.70427 -29.97999 -27.89736 -27.69445 -27.28800 -24.43686 -23.51185 -23.27029 -21.64281 -19.78333 -19.02292 -18.87599 -17.95455 -17.33034 -16.91380 -16.43171 -16.15905 -15.94976 -15.48985 -15.18984 -14.74935 -14.60769 -14.03736 -13.94660 -13.57834 -13.22131 -12.90518 -12.73089 -12.70084 -12.63393 -12.46244 -12.44308 -12.35410 -12.07979 -11.89317 -11.77611 -11.71116 -11.65235 -11.45101 -11.28130 -11.04554 -10.99968 -10.64042 -10.28117 -10.17947 -9.85568 -9.44740 -8.78841 -8.26401 -7.81188 -6.80886 -5.59884 1.21353 1.46307 1.96414 2.35951 2.62464 2.69214 2.71483 2.75646 3.06588 3.30222 3.72268 3.78221 3.85088 3.96332 4.05629 4.11726 4.28626 4.47364 4.52360 4.70257 5.04621 5.04873 5.22471 5.28611 5.34179 5.40075 5.44962 5.45858 5.61594 5.77051 5.82854 5.94012 6.03745 6.07706 6.27881 6.46029 6.58050 6.68682 6.89179 7.08979 7.28911 7.47917 7.60141 7.76027 7.98592 8.20522 8.30449 8.85030 9.00953 9.03981 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013123 B = 0.004010 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.208182 B = 6980.807387 C = 7977.289164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.105 3.895 3 C -0.170 4.170 4 O -0.295 6.295 5 C 0.087 3.913 6 C -0.149 4.149 7 C 0.231 3.769 8 N -0.645 5.645 9 C 0.374 3.626 10 C -0.375 4.375 11 H 0.114 0.886 12 C 0.073 3.927 13 N -0.716 5.716 14 Si 0.919 3.081 15 H -0.245 1.245 16 H -0.261 1.261 17 H -0.262 1.262 18 C -0.307 4.307 19 C 0.323 3.677 20 N -0.528 5.528 21 C 0.308 3.692 22 N -0.530 5.530 23 C 0.049 3.951 24 N -0.442 5.442 25 C 0.212 3.788 26 N -0.638 5.638 27 C 0.505 3.495 28 O -0.519 6.519 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.145 0.855 36 H 0.406 0.594 37 H 0.302 0.698 38 H 0.174 0.826 39 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.261 8.590 -5.996 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.063 3.937 3 C -0.228 4.228 4 O -0.209 6.209 5 C 0.037 3.963 6 C -0.179 4.179 7 C 0.123 3.877 8 N -0.265 5.265 9 C 0.271 3.729 10 C -0.403 4.403 11 H 0.132 0.868 12 C -0.159 4.159 13 N -0.334 5.334 14 Si 0.740 3.260 15 H -0.168 1.168 16 H -0.185 1.185 17 H -0.187 1.187 18 C -0.325 4.325 19 C 0.015 3.985 20 N -0.210 5.210 21 C 0.001 3.999 22 N -0.212 5.212 23 C -0.115 4.115 24 N -0.155 5.155 25 C -0.019 4.019 26 N -0.287 5.287 27 C 0.290 3.710 28 O -0.394 6.394 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.163 0.837 36 H 0.244 0.756 37 H 0.115 0.885 38 H 0.191 0.809 39 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -9.791 7.244 -6.205 13.668 hybrid contribution -0.066 1.087 0.011 1.090 sum -9.857 8.331 -6.194 14.316 Atomic orbital electron populations 1.21710 0.88602 1.04215 1.03972 1.22062 0.97382 0.92646 0.81584 1.22347 1.02576 0.93454 1.04389 1.86230 1.21567 1.73412 1.39699 1.18866 0.83782 1.00812 0.92834 1.20188 0.92169 1.08039 0.97553 1.18235 0.89506 0.91810 0.88197 1.41338 1.05024 1.74505 1.05660 1.16752 0.80638 0.87607 0.87934 1.20390 1.01649 0.93605 1.24608 0.86815 1.26457 0.95275 0.99101 0.95077 1.69493 1.15439 1.20184 1.28322 0.85964 0.81173 0.79398 0.79502 1.16778 1.18490 1.18663 1.12909 0.85191 1.07282 1.27121 1.24674 0.91246 0.91518 0.91100 1.81081 1.12392 1.11971 1.15571 1.25169 0.92314 0.91429 0.91024 1.81095 1.10450 1.12768 1.16906 1.22321 1.00514 1.03503 0.85209 1.66800 1.03796 1.13658 1.31240 1.18179 0.90280 1.08449 0.84951 1.43400 1.19116 1.53507 1.12652 1.21243 0.80462 0.78658 0.90638 1.90750 1.55512 1.59722 1.33401 0.90207 0.89202 0.91100 0.91448 0.90179 0.89616 0.83721 0.75645 0.88549 0.80926 0.74555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 8.43 37.16 0.31 -0.90 16 2 C 0.10 1.26 1.10 -91.75 -0.10 1.16 16 3 C -0.17 -1.75 8.58 37.16 0.32 -1.43 16 4 O -0.30 -4.06 9.82 -19.25 -0.19 -4.25 16 5 C 0.09 1.30 5.86 -39.01 -0.23 1.07 16 6 C -0.15 -2.21 10.00 -39.06 -0.39 -2.60 16 7 C 0.23 3.71 5.00 -83.51 -0.42 3.29 16 8 N -0.65 -10.61 3.34 -8.04 -0.03 -10.64 16 9 C 0.37 6.78 4.96 -83.57 -0.41 6.37 16 10 C -0.38 -6.74 7.09 -38.31 -0.27 -7.01 16 11 H 0.11 2.11 6.97 -52.49 -0.37 1.75 16 12 C 0.07 1.21 4.77 -17.20 -0.08 1.13 16 13 N -0.72 -11.78 10.82 55.59 0.60 -11.18 16 14 Si 0.92 13.68 29.58 -169.99 -5.03 8.65 16 15 H -0.25 -3.78 7.11 56.52 0.40 -3.38 16 16 H -0.26 -3.96 7.11 56.52 0.40 -3.56 16 17 H -0.26 -3.92 7.11 56.52 0.40 -3.51 16 18 C -0.31 -6.06 5.88 -104.93 -0.62 -6.68 16 19 C 0.32 6.83 13.88 -22.47 -0.31 6.52 16 20 N -0.53 -11.81 18.54 41.83 0.78 -11.03 16 21 C 0.31 6.41 14.81 -22.47 -0.33 6.07 16 22 N -0.53 -11.65 18.54 41.84 0.78 -10.88 16 23 C 0.05 0.81 9.75 -17.30 -0.17 0.64 16 24 N -0.44 -7.32 10.38 -11.94 -0.12 -7.45 16 25 C 0.21 3.32 7.61 -154.06 -1.17 2.15 16 26 N -0.64 -9.10 5.50 -11.11 -0.06 -9.16 16 27 C 0.50 7.10 6.89 -10.86 -0.07 7.02 16 28 O -0.52 -8.14 17.00 5.55 0.09 -8.04 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.79 7.86 -51.93 -0.41 0.38 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.79 7.81 -51.93 -0.41 0.39 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.15 1.90 8.06 -52.48 -0.42 1.48 16 36 H 0.41 6.37 8.84 -40.82 -0.36 6.00 16 37 H 0.30 4.58 8.29 -40.82 -0.34 4.24 16 38 H 0.17 2.93 6.28 -52.48 -0.33 2.60 16 39 H 0.42 5.43 8.94 -40.82 -0.36 5.06 16 LS Contribution 355.06 15.07 5.35 5.35 Total: -1.00 -24.02 355.06 -5.27 -29.28 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -3.48 Total: 12.53 kcal Atomic # 6 Polarization: 20.76 SS G_CDS: -3.95 Total: 16.81 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: 1.94 Total: -60.33 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.09 Total: -12.29 kcal Atomic # 14 Polarization: 13.68 SS G_CDS: -5.03 Total: 8.65 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -24.02 -5.27 -29.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083028.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.427 kcal (2) G-P(sol) polarization free energy of solvation -24.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds