Wall clock time and date at job start Tue Mar 31 2020 22:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.44093 * 2 1 4 4 O 1.43037 * 109.45646 * 119.95521 * 2 1 3 5 5 C 1.35845 * 116.65923 * 166.15217 * 4 2 1 6 6 C 1.38425 * 120.82182 * 147.58151 * 5 4 2 7 7 C 1.39463 * 118.21009 * 180.31476 * 6 5 4 8 8 N 1.39926 * 120.41530 * 179.78524 * 7 6 5 9 9 C 1.38259 * 119.99921 * 187.38449 * 8 7 6 10 10 C 1.39018 * 119.99912 * 60.67426 * 9 8 7 11 11 H 1.07995 * 120.00326 * 198.65809 * 10 9 8 12 12 C 1.40826 * 119.99800 * 18.66266 * 10 9 8 13 13 N 1.30347 * 120.00158 * 9.54019 * 12 10 9 14 14 Si 1.86800 * 119.99914 * 189.54428 * 12 10 9 15 15 H 1.48498 * 109.47188 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47237 * 119.99782 * 14 12 10 17 17 H 1.48501 * 109.46987 * 239.99901 * 14 12 10 18 18 C 1.41165 * 120.00040 * 240.67156 * 9 8 7 19 19 C 1.43209 * 119.99928 * 174.74988 * 18 9 8 20 20 N 9.32995 * 166.88560 * 333.85979 * 4 1 2 21 21 C 1.43198 * 120.00558 * 354.47716 * 18 9 8 22 22 N 8.66135 * 126.38870 * 127.92380 * 2 1 3 23 23 C 1.38773 * 119.16592 * 359.51292 * 7 6 5 24 24 N 1.31960 * 120.98911 * 0.23245 * 23 7 6 25 25 C 1.32180 * 121.67908 * 0.02562 * 24 23 7 26 26 N 1.39990 * 120.48133 * 180.10399 * 25 24 23 27 27 C 1.35018 * 119.11421 * 195.41302 * 26 25 24 28 28 O 1.21284 * 120.07151 * 181.61749 * 27 26 25 29 29 H 1.08998 * 109.47233 * 300.04498 * 1 2 3 30 30 H 1.09004 * 109.46951 * 60.04398 * 1 2 3 31 31 H 1.08999 * 109.47185 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47290 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46781 * 299.95596 * 3 2 1 34 34 H 1.09000 * 109.46910 * 59.95251 * 3 2 1 35 35 H 1.08004 * 120.89243 * 0.08385 * 6 5 4 36 36 H 0.96997 * 120.00335 * 7.39199 * 8 7 6 37 37 H 0.96998 * 120.00059 * 184.98670 * 13 12 10 38 38 H 1.08003 * 119.50041 * 180.25471 * 23 7 6 39 39 H 0.96998 * 120.44533 * 15.37459 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0393 1.4428 0.0000 4 8 2.0065 -0.6734 1.1685 5 6 3.3209 -1.0161 1.1812 6 6 4.0376 -1.0351 2.3654 7 6 5.3857 -1.3886 2.3145 8 7 6.1548 -1.4185 3.4830 9 6 7.5205 -1.6198 3.4068 10 6 8.3179 -0.7194 2.7097 11 1 9.3074 -1.0101 2.3891 12 6 7.8355 0.5720 2.4217 13 7 6.7254 0.9888 2.9631 14 14 8.7863 1.6875 1.2637 15 1 10.0038 0.9836 0.7869 16 1 7.9308 2.0398 0.1021 17 1 9.1804 2.9260 1.9820 18 6 8.1052 -2.7396 4.0368 19 6 9.5009 -3.0103 3.8647 20 7 10.6080 -3.2250 3.7282 21 6 7.3041 -3.6016 4.8528 22 7 6.6685 -4.2854 5.5001 23 6 5.9533 -1.7158 1.0912 24 7 5.2384 -1.6921 -0.0177 25 6 3.9596 -1.3576 -0.0121 26 7 3.2242 -1.3429 -1.2032 27 6 2.0325 -0.7089 -1.2317 28 8 1.3674 -0.7104 -2.2459 29 1 -0.3633 0.5145 0.8896 30 1 -0.3633 0.5132 -0.8904 31 1 -0.3633 -1.0277 0.0005 32 1 3.1292 1.4434 0.0005 33 1 1.6763 1.9562 -0.8904 34 1 1.6750 1.9566 0.8896 35 1 3.5663 -0.7794 3.3029 36 1 5.7298 -1.2982 4.3466 37 1 6.3552 1.8487 2.7096 38 1 6.9959 -1.9944 1.0461 39 1 3.5665 -1.7819 -1.9976 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169083028.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:00 Heat of formation + Delta-G solvation = 18.162846 kcal Electronic energy + Delta-G solvation = -28851.694093 eV Core-core repulsion = 24759.340483 eV Total energy + Delta-G solvation = -4092.353609 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.83415 -40.88849 -39.43701 -38.72547 -37.13332 -36.50889 -36.09326 -34.97045 -34.50643 -33.02864 -31.25637 -29.16408 -28.77758 -28.46121 -25.51259 -24.66620 -24.49378 -23.00063 -21.10378 -20.26914 -20.06961 -19.24070 -18.69328 -18.17317 -17.66855 -17.42404 -17.13435 -16.70424 -16.26229 -15.93959 -15.72656 -15.26600 -15.19500 -14.74328 -14.53954 -14.33668 -14.14758 -13.93639 -13.87233 -13.49045 -13.45325 -13.36328 -13.34329 -13.21476 -13.17198 -13.07415 -12.92781 -12.81449 -12.62983 -12.39003 -12.24294 -11.98009 -11.57752 -11.30354 -11.10580 -10.67533 -10.06075 -9.60717 -9.13434 -8.11374 -7.11572 -0.01205 0.23707 0.63933 1.20600 1.38950 1.52293 1.53151 1.58878 1.93857 2.06629 2.11137 2.28324 2.41174 2.61959 2.71780 2.82513 2.86615 3.44687 3.50863 3.61925 3.64093 3.85339 3.92081 4.01978 4.27523 4.48646 4.54396 4.60666 4.70464 4.70995 4.73507 4.76252 4.98031 5.01656 5.14545 5.23967 5.40513 5.43506 5.54309 5.69461 6.03902 6.14943 6.19975 6.60521 6.69397 6.87255 7.03011 7.23450 7.38826 7.69890 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013123 B = 0.004010 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.208182 B = 6980.807387 C = 7977.289164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.099 3.901 3 C -0.166 4.166 4 O -0.295 6.295 5 C 0.088 3.912 6 C -0.142 4.142 7 C 0.225 3.775 8 N -0.643 5.643 9 C 0.375 3.625 10 C -0.368 4.368 11 H 0.106 0.894 12 C 0.055 3.945 13 N -0.710 5.710 14 Si 0.963 3.037 15 H -0.256 1.256 16 H -0.262 1.262 17 H -0.257 1.257 18 C -0.321 4.321 19 C 0.328 3.672 20 N -0.558 5.558 21 C 0.317 3.683 22 N -0.557 5.557 23 C 0.035 3.965 24 N -0.453 5.453 25 C 0.210 3.790 26 N -0.639 5.639 27 C 0.502 3.498 28 O -0.537 6.537 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.164 0.836 36 H 0.410 0.590 37 H 0.313 0.687 38 H 0.165 0.835 39 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.844 10.611 -6.246 17.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.059 3.941 3 C -0.223 4.223 4 O -0.209 6.209 5 C 0.038 3.962 6 C -0.172 4.172 7 C 0.117 3.883 8 N -0.264 5.264 9 C 0.271 3.729 10 C -0.395 4.395 11 H 0.124 0.876 12 C -0.178 4.178 13 N -0.327 5.327 14 Si 0.784 3.216 15 H -0.179 1.179 16 H -0.186 1.186 17 H -0.181 1.181 18 C -0.340 4.340 19 C 0.022 3.978 20 N -0.241 5.241 21 C 0.011 3.989 22 N -0.240 5.240 23 C -0.128 4.128 24 N -0.167 5.167 25 C -0.022 4.022 26 N -0.288 5.288 27 C 0.288 3.712 28 O -0.413 6.413 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.124 0.876 35 H 0.182 0.818 36 H 0.248 0.752 37 H 0.126 0.874 38 H 0.183 0.817 39 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -11.396 9.266 -6.444 16.039 hybrid contribution 0.312 0.577 -0.035 0.657 sum -11.083 9.843 -6.479 16.177 Atomic orbital electron populations 1.21786 0.86503 1.04374 1.05575 1.22405 0.98840 0.93048 0.79844 1.22363 1.01466 0.92374 1.06133 1.86241 1.20597 1.73575 1.40472 1.18907 0.84394 1.00334 0.92554 1.20360 0.91569 1.06951 0.98307 1.18241 0.90013 0.92303 0.87714 1.41217 1.04337 1.74816 1.06012 1.16647 0.81449 0.87087 0.87759 1.20497 1.01209 0.94154 1.23643 0.87643 1.26779 0.95917 0.99163 0.95918 1.69450 1.15057 1.20707 1.27523 0.85300 0.79844 0.78270 0.78216 1.17895 1.18599 1.18092 1.12942 0.84575 1.08180 1.28264 1.24894 0.91466 0.90923 0.90529 1.81067 1.13166 1.12956 1.16911 1.25267 0.91914 0.91041 0.90643 1.81088 1.11256 1.13610 1.18084 1.22237 1.00427 1.04447 0.85706 1.66766 1.04367 1.14209 1.31368 1.18349 0.90140 1.08075 0.85642 1.43470 1.19250 1.53594 1.12481 1.21724 0.79990 0.78243 0.91223 1.90740 1.55864 1.60379 1.34318 0.87878 0.88297 0.91717 0.93109 0.88805 0.87557 0.81825 0.75162 0.87389 0.81748 0.74280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.43 71.98 0.61 -1.42 16 2 C 0.10 2.15 1.10 -11.53 -0.01 2.14 16 3 C -0.17 -2.94 8.58 71.98 0.62 -2.32 16 4 O -0.30 -7.39 9.82 -91.81 -0.90 -8.29 16 5 C 0.09 2.48 5.86 22.64 0.13 2.62 16 6 C -0.14 -3.92 10.00 22.61 0.23 -3.70 16 7 C 0.23 6.97 5.00 38.27 0.19 7.16 16 8 N -0.64 -20.52 3.34 -179.36 -0.60 -21.12 16 9 C 0.37 13.42 4.96 39.04 0.19 13.61 16 10 C -0.37 -12.98 7.09 23.09 0.16 -12.81 16 11 H 0.11 3.90 6.97 -2.91 -0.02 3.88 16 12 C 0.05 1.73 4.77 85.55 0.41 2.14 16 13 N -0.71 -21.80 10.82 21.98 0.24 -21.56 16 14 Si 0.96 26.59 29.58 68.60 2.03 28.62 16 15 H -0.26 -7.50 7.11 99.48 0.71 -6.79 16 16 H -0.26 -7.28 7.11 99.48 0.71 -6.57 16 17 H -0.26 -6.89 7.11 99.48 0.71 -6.18 16 18 C -0.32 -12.71 5.88 -20.07 -0.12 -12.82 16 19 C 0.33 14.05 13.88 88.34 1.23 15.28 16 20 N -0.56 -25.22 18.54 19.01 0.35 -24.87 16 21 C 0.32 13.23 14.81 88.33 1.31 14.54 16 22 N -0.56 -24.52 18.54 19.00 0.35 -24.17 16 23 C 0.03 1.15 9.75 84.80 0.83 1.98 16 24 N -0.45 -14.79 10.38 -191.68 -1.99 -16.78 16 25 C 0.21 6.33 7.61 132.90 1.01 7.34 16 26 N -0.64 -17.64 5.50 -307.32 -1.69 -19.33 16 27 C 0.50 13.37 6.89 87.63 0.60 13.97 16 28 O -0.54 -16.13 17.00 -3.04 -0.05 -16.18 16 29 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.10 1.45 7.86 -2.39 -0.02 1.43 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.05 1.08 7.81 -2.39 -0.02 1.06 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.16 3.86 8.06 -2.91 -0.02 3.83 16 36 H 0.41 12.36 8.84 -92.71 -0.82 11.54 16 37 H 0.31 8.62 8.29 -92.71 -0.77 7.85 16 38 H 0.17 5.62 6.28 -2.91 -0.02 5.60 16 39 H 0.42 10.73 8.94 -92.71 -0.83 9.90 16 Total: -1.00 -49.98 355.06 4.65 -45.32 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: -0.47 Total: 30.65 kcal Atomic # 6 Polarization: 40.33 SS G_CDS: 7.38 Total: 47.71 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -3.34 Total: -127.83 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.95 Total: -24.48 kcal Atomic # 14 Polarization: 26.59 SS G_CDS: 2.03 Total: 28.62 kcal Total: -49.98 4.65 -45.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083028.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.486 kcal (2) G-P(sol) polarization free energy of solvation -49.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds