Wall clock time and date at job start Tue Mar 31 2020 22:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99864 * 2 1 4 4 H 1.48495 * 109.47405 * 240.00191 * 3 2 1 5 5 H 1.48501 * 109.47294 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47090 * 120.00196 * 3 2 1 7 7 C 1.38945 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00556 * 179.97438 * 7 2 1 9 9 N 1.37104 * 119.99713 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00010 * 180.02562 * 9 7 2 11 11 O 1.21303 * 119.99885 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00172 * 179.97438 * 10 9 7 13 13 N 1.46907 * 109.47095 * 179.97438 * 12 10 9 14 14 C 1.46902 * 110.99665 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46901 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.46886 * 180.02562 * 15 14 13 17 17 N 1.46499 * 109.46840 * 180.02562 * 16 15 14 18 18 C 1.34779 * 119.99872 * 180.02562 * 17 16 15 19 19 O 1.21553 * 119.99965 * 0.02562 * 18 17 16 20 20 C 1.47846 * 120.00003 * 180.02562 * 18 17 16 21 21 C 1.39602 * 120.14004 * 359.72516 * 20 18 17 22 22 C 1.37939 * 119.88134 * 179.76561 * 21 20 18 23 23 C 1.38354 * 120.16071 * 0.51261 * 22 21 20 24 24 C 1.38458 * 120.28016 * 359.73865 * 23 22 21 25 25 Cl 1.73598 * 119.94146 * 180.02562 * 24 23 22 26 26 C 1.38099 * 120.11545 * 0.02562 * 24 23 22 27 27 H 0.96999 * 120.00502 * 0.02562 * 1 2 3 28 28 H 0.96992 * 120.00196 * 359.97438 * 9 7 2 29 29 H 1.08995 * 109.47029 * 60.00037 * 12 10 9 30 30 H 1.08993 * 109.46943 * 299.99870 * 12 10 9 31 31 H 1.00898 * 110.99982 * 303.95307 * 13 12 10 32 32 H 1.09001 * 109.46712 * 60.00151 * 14 13 12 33 33 H 1.09002 * 109.47411 * 300.00262 * 14 13 12 34 34 H 1.09001 * 109.46652 * 60.00371 * 15 14 13 35 35 H 1.08992 * 109.47514 * 300.00460 * 15 14 13 36 36 H 1.09002 * 109.47398 * 300.00496 * 16 15 14 37 37 H 1.09001 * 109.47194 * 60.00677 * 16 15 14 38 38 H 0.97000 * 120.00420 * 0.02562 * 17 16 15 39 39 H 1.07996 * 120.05470 * 0.02562 * 21 20 18 40 40 H 1.07997 * 119.92008 * 180.22829 * 22 21 20 41 41 H 1.08006 * 119.86435 * 179.76055 * 23 22 21 42 42 H 1.08003 * 120.07804 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1986 -5.9794 -0.0007 14 6 1.4983 -7.2708 0.0005 15 6 2.5232 -8.4067 -0.0010 16 6 1.7938 -9.7517 -0.0004 17 7 2.7752 -10.8394 -0.0012 18 6 2.3601 -12.1216 -0.0014 19 8 1.1714 -12.3756 -0.0014 20 6 3.3505 -13.2193 -0.0016 21 6 4.7164 -12.9310 -0.0074 22 6 5.6358 -13.9593 -0.0027 23 6 5.2074 -15.2748 -0.0029 24 6 3.8543 -15.5684 -0.0025 25 17 3.3266 -17.2222 -0.0021 26 6 2.9239 -14.5479 -0.0023 27 1 -0.4851 0.8400 -0.0004 28 1 0.3535 -2.3907 0.0002 29 1 0.6169 -4.9208 -0.8897 30 1 0.6176 -4.9204 0.8902 31 1 2.8328 -5.9124 -0.7825 32 1 0.8724 -7.3454 -0.8888 33 1 0.8743 -7.3450 0.8911 34 1 3.1494 -8.3322 0.8881 35 1 3.1468 -8.3324 -0.8918 36 1 1.1699 -9.8264 0.8902 37 1 1.1680 -9.8260 -0.8898 38 1 3.7238 -10.6368 -0.0016 39 1 5.0525 -11.9047 -0.0113 40 1 6.6927 -13.7369 -0.0034 41 1 5.9315 -16.0762 -0.0031 42 1 1.8685 -14.7776 -0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171844346.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:29 Heat of formation + Delta-G solvation = -60.066938 kcal Electronic energy + Delta-G solvation = -24372.245574 eV Core-core repulsion = 20377.607160 eV Total energy + Delta-G solvation = -3994.638413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.70407 -38.97082 -38.32715 -36.96810 -36.61118 -35.01000 -33.86966 -32.31580 -31.57417 -31.24980 -30.75847 -27.26929 -25.29861 -24.18432 -23.32140 -22.86877 -21.79364 -20.83724 -19.27073 -18.65539 -17.88562 -16.89249 -16.57051 -16.35036 -16.03120 -15.80192 -15.48030 -15.36788 -14.70002 -14.45055 -14.44296 -14.38038 -14.06771 -13.87667 -13.52154 -13.41226 -12.92854 -12.56077 -12.16246 -12.11631 -12.01196 -11.88130 -11.82562 -11.51552 -11.48725 -11.45582 -11.09968 -10.96880 -10.45158 -10.38702 -10.22365 -9.73133 -9.51187 -9.47415 -9.35481 -8.49237 -8.09909 -7.97329 -6.42628 -3.83732 0.15425 0.55773 1.52347 2.31254 2.69147 3.19340 3.20472 3.25240 3.29473 3.89368 4.03699 4.08409 4.15717 4.26500 4.37266 4.46206 4.69072 4.75842 4.81637 4.95995 5.00111 5.14877 5.19692 5.24583 5.37822 5.43830 5.50996 5.57137 5.59205 5.62194 5.76807 5.89218 5.95643 5.97228 6.00668 6.08785 6.25203 7.04424 7.16115 7.53900 7.61445 7.76054 8.04872 8.60022 9.16543 9.53032 10.04380 10.74978 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.044076 B = 0.001261 C = 0.001227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.114167 B =22204.829144 C =22806.858855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.585 6.585 12 C 0.051 3.949 13 N -0.670 5.670 14 C 0.062 3.938 15 C -0.130 4.130 16 C 0.120 3.880 17 N -0.722 5.722 18 C 0.558 3.442 19 O -0.532 6.532 20 C -0.121 4.121 21 C -0.082 4.082 22 C -0.112 4.112 23 C -0.086 4.086 24 C -0.044 4.044 25 Cl -0.062 7.062 26 C -0.053 4.053 27 H 0.272 0.728 28 H 0.392 0.608 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.349 0.651 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.401 0.599 39 H 0.135 0.865 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.151 -31.338 -0.894 32.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.469 6.469 12 C -0.082 4.082 13 N -0.302 5.302 14 C -0.068 4.068 15 C -0.168 4.168 16 C -0.004 4.004 17 N -0.374 5.374 18 C 0.344 3.656 19 O -0.409 6.409 20 C -0.124 4.124 21 C -0.101 4.101 22 C -0.130 4.130 23 C -0.105 4.105 24 C -0.070 4.070 25 Cl -0.033 7.033 26 C -0.072 4.072 27 H 0.082 0.918 28 H 0.226 0.774 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.168 0.832 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.237 0.763 39 H 0.153 0.847 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.985 -31.443 -0.214 32.210 hybrid contribution -0.149 0.803 -0.894 1.211 sum 6.835 -30.640 -1.108 31.413 Atomic orbital electron populations 1.69600 1.05946 1.28300 1.50425 1.25258 0.95626 0.99721 0.97245 0.85914 0.78765 0.80442 0.79071 1.19918 1.20963 1.19874 1.19662 0.93359 0.82258 1.47814 0.87963 1.41855 1.09214 1.04596 1.64258 1.19808 0.88386 0.84735 0.84548 1.90519 1.13762 1.87087 1.55534 1.21669 0.94326 0.90898 1.01306 1.60045 1.18987 0.99895 1.51274 1.21824 0.95291 0.88763 1.00904 1.21752 0.99047 0.92268 1.03733 1.21396 0.91219 0.84832 1.02919 1.45907 1.10858 1.05481 1.75132 1.18127 0.88122 0.82650 0.76686 1.90809 1.16883 1.83912 1.49332 1.19898 0.93597 0.93421 1.05483 1.21472 0.91827 1.00235 0.96566 1.21119 1.00477 0.91540 0.99913 1.21322 0.93853 0.97816 0.97549 1.20851 0.94075 0.86128 1.05993 1.98396 1.90741 1.17236 1.96910 1.21175 1.00689 0.90146 0.95196 0.91795 0.77433 0.93802 0.89526 0.83189 0.95187 0.90704 0.90026 0.91178 0.90868 0.91096 0.76291 0.84722 0.84110 0.84318 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 9 N -0.56 -14.20 5.29 -10.96 -0.06 -14.25 16 10 C 0.44 10.30 7.82 -10.99 -0.09 10.21 16 11 O -0.58 -15.73 15.78 5.54 0.09 -15.64 16 12 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 13 N -0.67 -10.27 6.13 -115.05 -0.70 -10.97 16 14 C 0.06 0.69 5.69 -3.82 -0.02 0.67 16 15 C -0.13 -1.12 5.59 -26.73 -0.15 -1.27 16 16 C 0.12 1.02 5.67 -4.04 -0.02 1.00 16 17 N -0.72 -5.55 5.51 -61.25 -0.34 -5.88 16 18 C 0.56 5.52 7.77 -12.33 -0.10 5.43 16 19 O -0.53 -7.27 16.35 5.32 0.09 -7.18 16 20 C -0.12 -0.95 5.87 -104.97 -0.62 -1.56 16 21 C -0.08 -0.43 9.54 -39.18 -0.37 -0.80 16 22 C -0.11 -0.48 10.03 -39.65 -0.40 -0.88 16 23 C -0.09 -0.45 9.82 -39.46 -0.39 -0.83 16 24 C -0.04 -0.30 6.31 -39.55 -0.25 -0.55 16 25 Cl -0.06 -0.43 28.95 -51.86 -1.50 -1.93 16 26 C -0.05 -0.43 9.37 -39.15 -0.37 -0.80 16 27 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.35 5.46 8.43 -39.29 -0.33 5.13 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.40 2.01 6.51 -40.82 -0.27 1.75 16 39 H 0.14 0.37 6.40 -52.49 -0.34 0.04 16 40 H 0.14 0.26 8.06 -52.49 -0.42 -0.17 16 41 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 42 H 0.15 1.29 7.65 -52.48 -0.40 0.89 16 LS Contribution 380.37 15.07 5.73 5.73 Total: -1.00 -33.80 380.37 -9.43 -43.23 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -5.40 Total: 11.24 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -3.04 Total: 3.45 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.38 Total: -54.80 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: 0.17 Total: -22.82 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.50 Total: -1.93 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.80 -9.43 -43.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171844346.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.839 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds