Wall clock time and date at job start Tue Mar 31 2020 22:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99864 * 2 1 4 4 H 1.48495 * 109.47405 * 240.00191 * 3 2 1 5 5 H 1.48501 * 109.47294 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47090 * 120.00196 * 3 2 1 7 7 C 1.38945 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00556 * 179.97438 * 7 2 1 9 9 N 1.37104 * 119.99713 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00010 * 180.02562 * 9 7 2 11 11 O 1.21303 * 119.99885 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00172 * 179.97438 * 10 9 7 13 13 N 1.46907 * 109.47095 * 179.97438 * 12 10 9 14 14 C 1.46902 * 110.99665 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46901 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.46886 * 180.02562 * 15 14 13 17 17 N 1.46499 * 109.46840 * 180.02562 * 16 15 14 18 18 C 1.34779 * 119.99872 * 180.02562 * 17 16 15 19 19 O 1.21553 * 119.99965 * 0.02562 * 18 17 16 20 20 C 1.47846 * 120.00003 * 180.02562 * 18 17 16 21 21 C 1.39602 * 120.14004 * 359.72516 * 20 18 17 22 22 C 1.37939 * 119.88134 * 179.76561 * 21 20 18 23 23 C 1.38354 * 120.16071 * 0.51261 * 22 21 20 24 24 C 1.38458 * 120.28016 * 359.73865 * 23 22 21 25 25 Cl 1.73598 * 119.94146 * 180.02562 * 24 23 22 26 26 C 1.38099 * 120.11545 * 0.02562 * 24 23 22 27 27 H 0.96999 * 120.00502 * 0.02562 * 1 2 3 28 28 H 0.96992 * 120.00196 * 359.97438 * 9 7 2 29 29 H 1.08995 * 109.47029 * 60.00037 * 12 10 9 30 30 H 1.08993 * 109.46943 * 299.99870 * 12 10 9 31 31 H 1.00898 * 110.99982 * 303.95307 * 13 12 10 32 32 H 1.09001 * 109.46712 * 60.00151 * 14 13 12 33 33 H 1.09002 * 109.47411 * 300.00262 * 14 13 12 34 34 H 1.09001 * 109.46652 * 60.00371 * 15 14 13 35 35 H 1.08992 * 109.47514 * 300.00460 * 15 14 13 36 36 H 1.09002 * 109.47398 * 300.00496 * 16 15 14 37 37 H 1.09001 * 109.47194 * 60.00677 * 16 15 14 38 38 H 0.97000 * 120.00420 * 0.02562 * 17 16 15 39 39 H 1.07996 * 120.05470 * 0.02562 * 21 20 18 40 40 H 1.07997 * 119.92008 * 180.22829 * 22 21 20 41 41 H 1.08006 * 119.86435 * 179.76055 * 23 22 21 42 42 H 1.08003 * 120.07804 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1986 -5.9794 -0.0007 14 6 1.4983 -7.2708 0.0005 15 6 2.5232 -8.4067 -0.0010 16 6 1.7938 -9.7517 -0.0004 17 7 2.7752 -10.8394 -0.0012 18 6 2.3601 -12.1216 -0.0014 19 8 1.1714 -12.3756 -0.0014 20 6 3.3505 -13.2193 -0.0016 21 6 4.7164 -12.9310 -0.0074 22 6 5.6358 -13.9593 -0.0027 23 6 5.2074 -15.2748 -0.0029 24 6 3.8543 -15.5684 -0.0025 25 17 3.3266 -17.2222 -0.0021 26 6 2.9239 -14.5479 -0.0023 27 1 -0.4851 0.8400 -0.0004 28 1 0.3535 -2.3907 0.0002 29 1 0.6169 -4.9208 -0.8897 30 1 0.6176 -4.9204 0.8902 31 1 2.8328 -5.9124 -0.7825 32 1 0.8724 -7.3454 -0.8888 33 1 0.8743 -7.3450 0.8911 34 1 3.1494 -8.3322 0.8881 35 1 3.1468 -8.3324 -0.8918 36 1 1.1699 -9.8264 0.8902 37 1 1.1680 -9.8260 -0.8898 38 1 3.7238 -10.6368 -0.0016 39 1 5.0525 -11.9047 -0.0113 40 1 6.6927 -13.7369 -0.0034 41 1 5.9315 -16.0762 -0.0031 42 1 1.8685 -14.7776 -0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171844346.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:29 Heat of formation + Delta-G solvation = -84.880484 kcal Electronic energy + Delta-G solvation = -24373.321570 eV Core-core repulsion = 20377.607160 eV Total energy + Delta-G solvation = -3995.714409 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.34242 -40.14878 -39.53871 -37.65857 -37.45585 -36.16221 -35.68549 -33.31679 -32.98788 -32.07778 -31.48434 -28.60107 -26.66217 -25.30092 -24.08649 -23.53387 -22.59021 -21.53579 -21.04319 -19.90329 -19.24149 -17.89190 -17.41369 -17.23719 -17.05024 -16.66146 -16.39987 -16.38250 -15.97190 -15.92730 -15.57396 -15.11763 -15.07672 -14.79487 -14.56510 -14.46480 -14.21582 -13.55037 -13.36951 -13.18883 -12.98289 -12.85099 -12.74943 -12.54084 -12.53400 -12.41978 -12.39886 -12.11508 -12.03098 -11.84530 -11.49068 -11.17099 -10.34548 -10.33545 -10.05674 -10.01120 -9.84803 -9.32396 -8.45799 -5.94899 -0.34787 0.09924 1.02706 1.40896 1.42936 1.53834 1.69325 2.01794 2.05991 2.30407 2.67106 2.94926 3.21618 3.51963 3.54426 3.75973 3.95011 4.01152 4.03358 4.14194 4.16841 4.27065 4.34155 4.47062 4.50231 4.57480 4.60270 4.70819 4.77367 4.80190 5.05193 5.13807 5.15134 5.19946 5.22354 5.35261 5.41389 5.63434 5.89024 6.10300 6.40795 6.44645 6.60631 7.08162 7.12991 7.56887 8.11835 8.71292 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.044076 B = 0.001261 C = 0.001227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.114167 B =22204.829144 C =22806.858855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.064 3.936 13 N -0.683 5.683 14 C 0.062 3.938 15 C -0.115 4.115 16 C 0.126 3.874 17 N -0.708 5.708 18 C 0.555 3.445 19 O -0.580 6.580 20 C -0.138 4.138 21 C -0.075 4.075 22 C -0.105 4.105 23 C -0.082 4.082 24 C -0.055 4.055 25 Cl -0.069 7.069 26 C -0.071 4.071 27 H 0.278 0.722 28 H 0.396 0.604 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.346 0.654 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.416 0.584 39 H 0.162 0.838 40 H 0.176 0.824 41 H 0.161 0.839 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.749 -31.495 -1.003 32.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.510 6.510 12 C -0.068 4.068 13 N -0.315 5.315 14 C -0.067 4.067 15 C -0.154 4.154 16 C 0.001 3.999 17 N -0.361 5.361 18 C 0.343 3.657 19 O -0.461 6.461 20 C -0.141 4.141 21 C -0.093 4.093 22 C -0.123 4.123 23 C -0.101 4.101 24 C -0.081 4.081 25 Cl -0.040 7.040 26 C -0.091 4.091 27 H 0.087 0.913 28 H 0.230 0.770 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.165 0.835 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.255 0.745 39 H 0.179 0.821 40 H 0.193 0.807 41 H 0.178 0.822 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.591 -31.608 -0.322 32.756 hybrid contribution -0.600 0.783 -0.857 1.307 sum 7.990 -30.825 -1.179 31.866 Atomic orbital electron populations 1.69664 1.06870 1.29379 1.50213 1.26036 0.96518 1.02423 0.96188 0.84988 0.77760 0.76608 0.78982 1.19605 1.19563 1.19713 1.19658 0.92774 0.84062 1.50119 0.90206 1.41935 1.09344 1.04745 1.64993 1.20897 0.88289 0.86186 0.82220 1.90485 1.15787 1.87981 1.56706 1.21531 0.94064 0.88132 1.03106 1.60045 1.19183 1.00869 1.51422 1.21910 0.95863 0.87350 1.01618 1.21592 0.98366 0.91111 1.04282 1.21263 0.91282 0.84990 1.02320 1.45779 1.11602 1.04663 1.74028 1.18498 0.87884 0.83546 0.75795 1.90779 1.18924 1.84636 1.51789 1.19805 0.94437 0.92405 1.07470 1.21790 0.90514 1.02035 0.94986 1.21537 1.01967 0.90656 0.98095 1.21675 0.93230 0.99140 0.96048 1.20946 0.94790 0.85532 1.06873 1.98389 1.90973 1.17601 1.96999 1.21117 1.00215 0.91064 0.96681 0.91298 0.76985 0.91565 0.87882 0.83540 0.94071 0.90333 0.89975 0.90116 0.91678 0.91659 0.74525 0.82053 0.80693 0.82160 0.85380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.44 13.05 21.66 0.28 -49.15 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 3 Si 0.99 42.51 29.55 68.60 2.03 44.54 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.34 -19.01 9.68 84.04 0.81 -18.19 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.57 -29.17 5.29 -306.98 -1.62 -30.79 16 10 C 0.44 20.45 7.82 87.66 0.69 21.13 16 11 O -0.62 -33.91 15.78 -3.10 -0.05 -33.96 16 12 C 0.06 2.12 6.17 85.56 0.53 2.65 16 13 N -0.68 -19.85 6.13 -517.92 -3.17 -23.02 16 14 C 0.06 1.25 5.69 86.30 0.49 1.74 16 15 C -0.12 -1.75 5.59 30.59 0.17 -1.58 16 16 C 0.13 1.99 5.67 86.38 0.49 2.48 16 17 N -0.71 -9.98 5.51 -465.97 -2.57 -12.54 16 18 C 0.55 10.98 7.77 86.79 0.67 11.66 16 19 O -0.58 -16.61 16.35 -3.88 -0.06 -16.68 16 20 C -0.14 -2.09 5.87 -20.09 -0.12 -2.21 16 21 C -0.07 -0.58 9.54 22.53 0.21 -0.37 16 22 C -0.10 -0.55 10.03 22.23 0.22 -0.32 16 23 C -0.08 -0.66 9.82 22.35 0.22 -0.44 16 24 C -0.05 -0.73 6.31 22.29 0.14 -0.59 16 25 Cl -0.07 -0.95 28.95 -2.72 -0.08 -1.03 16 26 C -0.07 -1.20 9.37 22.55 0.21 -0.99 16 27 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 28 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 29 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.35 10.38 8.43 -89.70 -0.76 9.62 16 32 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.42 3.16 6.51 -92.71 -0.60 2.56 16 39 H 0.16 0.29 6.40 -2.91 -0.02 0.28 16 40 H 0.18 -0.24 8.06 -2.91 -0.02 -0.26 16 41 H 0.16 0.56 8.06 -2.91 -0.02 0.53 16 42 H 0.13 2.56 7.65 -2.91 -0.02 2.53 16 Total: -1.00 -75.02 380.37 -1.04 -76.05 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -1.01 Total: 31.79 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 5.21 Total: 14.80 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -7.08 Total: -115.51 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -0.11 Total: -50.64 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.03 kcal Total: -75.02 -1.04 -76.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171844346.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.826 kcal (2) G-P(sol) polarization free energy of solvation -75.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds