Wall clock time and date at job start Tue Mar 31 2020 22:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00250 * 2 1 4 4 H 1.48498 * 109.47128 * 270.00086 * 3 2 1 5 5 H 1.48499 * 109.46905 * 29.99633 * 3 2 1 6 6 H 1.48497 * 109.47203 * 150.00184 * 3 2 1 7 7 C 1.38820 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99943 * 0.02562 * 7 2 1 9 9 N 1.36938 * 119.99921 * 180.02562 * 7 2 1 10 10 C 1.46494 * 120.00003 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47080 * 179.97438 * 10 9 7 12 12 H 1.08989 * 109.47108 * 304.99203 * 11 10 9 13 13 C 1.54804 * 109.46723 * 184.99482 * 11 10 9 14 14 N 1.45121 * 109.53004 * 172.10457 * 13 11 10 15 15 C 1.34783 * 118.75922 * 269.29856 * 14 13 11 16 16 O 1.21525 * 119.99443 * 5.85394 * 15 14 13 17 17 C 1.48066 * 119.99787 * 185.85828 * 15 14 13 18 18 C 1.39867 * 120.93701 * 53.52192 * 17 15 14 19 19 C 1.38081 * 119.02458 * 180.02562 * 18 17 15 20 20 N 1.31848 * 120.93547 * 0.02562 * 19 18 17 21 21 C 1.31756 * 122.07568 * 359.69944 * 20 19 18 22 22 C 1.38358 * 120.86747 * 0.59218 * 21 20 19 23 23 Cl 1.73601 * 120.52072 * 179.69833 * 22 21 20 24 24 C 1.47505 * 122.48482 * 89.56956 * 14 13 11 25 25 C 1.53946 * 110.82270 * 317.98010 * 24 14 13 26 26 C 1.51532 * 109.72727 * 320.30406 * 25 24 14 27 27 O 1.38020 * 109.46964 * 64.98656 * 11 10 9 28 28 H 0.96998 * 119.99682 * 0.02562 * 1 2 3 29 29 H 0.97004 * 119.99758 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.47512 * 59.99817 * 10 9 7 31 31 H 1.09006 * 109.46814 * 300.00019 * 10 9 7 32 32 H 1.09005 * 109.46123 * 52.08893 * 13 11 10 33 33 H 1.09001 * 109.45862 * 292.11750 * 13 11 10 34 34 H 1.08002 * 120.48804 * 0.04224 * 18 17 15 35 35 H 1.07997 * 119.53380 * 180.02562 * 19 18 17 36 36 H 1.07995 * 119.57010 * 180.31597 * 21 20 19 37 37 H 1.09006 * 109.16575 * 78.50090 * 24 14 13 38 38 H 1.09000 * 109.16597 * 197.69336 * 24 14 13 39 39 H 1.08997 * 109.45964 * 200.17678 * 25 24 14 40 40 H 1.08998 * 109.29559 * 80.33263 * 25 24 14 41 41 H 1.09001 * 109.58699 * 331.51041 * 26 25 24 42 42 H 1.08997 * 109.59258 * 211.07851 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3797 -1.2023 0.0011 10 6 4.1121 -2.4710 0.0011 11 6 5.6163 -2.1914 0.0011 12 1 5.8659 -1.5457 -0.8407 13 6 6.3892 -3.5267 -0.1260 14 7 7.8021 -3.2535 -0.3137 15 6 8.2769 -3.1263 -1.5687 16 8 7.5106 -3.1343 -2.5119 17 6 9.7320 -2.9771 -1.7981 18 6 10.6415 -3.8994 -1.2702 19 6 11.9900 -3.7218 -1.5081 20 7 12.4239 -2.7009 -2.2208 21 6 11.6027 -1.8116 -2.7412 22 6 10.2361 -1.9086 -2.5479 23 17 9.1630 -0.7275 -3.2313 24 6 8.7393 -3.1154 0.8170 25 6 8.1071 -2.2931 1.9545 26 6 7.3112 -1.1424 1.3727 27 8 5.9681 -1.5664 1.1803 28 1 -0.4849 0.8401 -0.0004 29 1 3.8647 -0.3622 0.0007 30 1 3.8491 -3.0424 -0.8891 31 1 3.8484 -3.0427 0.8909 32 1 6.0106 -4.0854 -0.9819 33 1 6.2505 -4.1143 0.7815 34 1 10.2941 -4.7382 -0.6853 35 1 12.6994 -4.4292 -1.1047 36 1 12.0018 -0.9938 -3.3227 37 1 8.9999 -4.1064 1.1888 38 1 9.6439 -2.6141 0.4727 39 1 8.8934 -1.9011 2.5996 40 1 7.4456 -2.9339 2.5375 41 1 7.7418 -0.8473 0.4158 42 1 7.3327 -0.2979 2.0614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201483469.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:18 Heat of formation + Delta-G solvation = -40.005791 kcal Electronic energy + Delta-G solvation = -27776.741145 eV Core-core repulsion = 23782.972648 eV Total energy + Delta-G solvation = -3993.768497 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.19847 -40.96168 -39.63018 -37.80202 -37.09869 -36.41227 -34.46770 -33.86210 -33.03144 -32.22497 -30.57533 -28.17403 -27.05987 -25.69729 -24.67472 -23.97635 -22.92681 -22.42518 -20.89059 -19.83215 -19.07915 -18.16058 -17.75799 -17.63326 -17.58077 -17.01417 -16.74046 -16.45714 -15.86603 -15.64123 -15.37233 -15.21311 -15.07983 -14.87731 -14.81385 -14.56367 -14.03280 -13.82247 -13.63141 -13.41839 -13.20281 -13.15002 -12.89695 -12.68777 -12.45100 -12.37092 -12.23111 -12.07700 -11.85953 -11.61398 -11.46526 -11.05862 -10.94194 -10.67502 -10.62364 -10.14156 -9.79959 -9.34291 -8.06241 -5.38985 -0.49183 -0.22147 0.84897 1.31000 1.33333 1.35582 1.43925 1.70830 2.44725 2.48191 2.62773 3.01823 3.25638 3.33131 3.42097 3.51804 3.64204 3.74441 3.88466 3.96573 3.99792 4.05858 4.18071 4.21433 4.34455 4.39903 4.48052 4.54956 4.62391 4.65599 4.74435 4.78001 4.83574 5.03242 5.06604 5.12575 5.31760 5.38904 5.70650 6.02301 6.17603 6.64382 6.65004 6.82072 7.03116 7.79204 7.98454 9.15252 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016736 B = 0.003318 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.682328 B = 8435.854074 C = 9081.200162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.061 4.061 3 Si 0.951 3.049 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.258 1.258 7 C -0.234 4.234 8 H 0.062 0.938 9 N -0.755 5.755 10 C 0.166 3.834 11 C 0.099 3.901 12 H 0.025 0.975 13 C 0.095 3.905 14 N -0.595 5.595 15 C 0.547 3.453 16 O -0.550 6.550 17 C -0.085 4.085 18 C -0.118 4.118 19 C 0.114 3.886 20 N -0.471 5.471 21 C 0.117 3.883 22 C -0.074 4.074 23 Cl -0.055 7.055 24 C 0.098 3.902 25 C -0.156 4.156 26 C 0.062 3.938 27 O -0.395 6.395 28 H 0.259 0.741 29 H 0.364 0.636 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.181 0.819 35 H 0.211 0.789 36 H 0.185 0.815 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.084 0.916 41 H 0.036 0.964 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.947 -9.454 2.390 35.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.252 4.252 3 Si 0.778 3.222 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.183 1.183 7 C -0.364 4.364 8 H 0.080 0.920 9 N -0.400 5.400 10 C 0.039 3.961 11 C 0.039 3.961 12 H 0.043 0.957 13 C -0.029 4.029 14 N -0.327 5.327 15 C 0.334 3.666 16 O -0.427 6.427 17 C -0.097 4.097 18 C -0.138 4.138 19 C -0.043 4.043 20 N -0.180 5.180 21 C -0.040 4.040 22 C -0.103 4.103 23 Cl -0.026 7.026 24 C -0.022 4.022 25 C -0.194 4.194 26 C -0.014 4.014 27 O -0.315 6.315 28 H 0.068 0.932 29 H 0.197 0.803 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.133 0.867 34 H 0.198 0.802 35 H 0.227 0.773 36 H 0.202 0.798 37 H 0.128 0.872 38 H 0.110 0.890 39 H 0.137 0.863 40 H 0.103 0.897 41 H 0.054 0.946 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 34.006 -9.358 1.872 35.319 hybrid contribution -1.310 1.337 -0.545 1.949 sum 32.695 -8.021 1.327 33.691 Atomic orbital electron populations 1.69868 1.06870 1.26689 1.59765 1.25436 0.96117 1.00995 1.02687 0.85459 0.78659 0.80117 0.77928 1.20822 1.21455 1.18276 1.19075 0.82406 0.93766 1.41192 0.91972 1.42612 1.02613 1.03943 1.90877 1.20749 0.87914 0.88136 0.99311 1.21945 0.94154 0.93578 0.86458 0.95734 1.22212 0.79442 0.96717 1.04554 1.47918 1.09104 1.69632 1.06007 1.18645 0.87813 0.76668 0.83482 1.90866 1.58876 1.49959 1.43039 1.20272 0.93839 0.96508 0.99069 1.22717 0.93316 0.98964 0.98770 1.23570 0.94187 0.94237 0.92287 1.67822 1.38723 1.03116 1.08323 1.23053 0.86155 0.98288 0.96499 1.22387 0.93581 0.93882 1.00495 1.98445 1.64855 1.56018 1.83303 1.22532 0.91200 1.02919 0.85539 1.22497 1.01362 0.97446 0.98129 1.22416 0.81260 0.97762 0.99916 1.86357 1.29855 1.77263 1.37979 0.93218 0.80341 0.94006 0.94075 0.89642 0.86688 0.80196 0.77283 0.79775 0.87160 0.89033 0.86276 0.89696 0.94574 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.11 13.97 21.65 0.30 -64.80 16 2 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 3 Si 0.95 48.57 27.74 68.60 1.90 50.48 16 4 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 5 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 6 H -0.26 -12.31 6.52 99.48 0.65 -11.66 16 7 C -0.23 -14.14 10.47 84.04 0.88 -13.26 16 8 H 0.06 4.03 8.06 -2.91 -0.02 4.01 16 9 N -0.76 -38.78 5.34 -343.45 -1.83 -40.62 16 10 C 0.17 6.81 5.92 86.38 0.51 7.32 16 11 C 0.10 3.30 2.68 31.21 0.08 3.38 16 12 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 13 C 0.09 2.33 4.82 87.25 0.42 2.75 16 14 N -0.59 -11.78 2.18 -820.38 -1.79 -13.57 16 15 C 0.55 13.24 6.63 86.85 0.58 13.81 16 16 O -0.55 -18.66 15.75 -3.80 -0.06 -18.72 16 17 C -0.08 -1.51 4.45 -19.87 -0.09 -1.60 16 18 C -0.12 -1.05 8.03 22.63 0.18 -0.86 16 19 C 0.11 0.83 11.17 84.65 0.95 1.78 16 20 N -0.47 -6.09 10.33 -195.92 -2.02 -8.11 16 21 C 0.12 1.72 10.99 84.73 0.93 2.66 16 22 C -0.07 -1.41 6.37 22.71 0.14 -1.27 16 23 Cl -0.06 -1.35 27.56 -2.72 -0.07 -1.43 16 24 C 0.10 1.06 5.04 86.51 0.44 1.49 16 25 C -0.16 -1.99 5.79 30.43 0.18 -1.81 16 26 C 0.06 1.39 6.38 71.50 0.46 1.84 16 27 O -0.40 -12.63 9.38 -117.93 -1.11 -13.74 16 28 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 29 H 0.36 18.46 5.52 -92.71 -0.51 17.95 16 30 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.09 2.32 7.36 -2.38 -0.02 2.30 16 33 H 0.12 2.25 8.11 -2.39 -0.02 2.23 16 34 H 0.18 0.48 7.68 -2.91 -0.02 0.46 16 35 H 0.21 -0.17 8.06 -2.91 -0.02 -0.20 16 36 H 0.19 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.11 0.47 8.07 -2.38 -0.02 0.45 16 38 H 0.09 0.81 5.78 -2.39 -0.01 0.80 16 39 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.08 1.18 8.01 -2.39 -0.02 1.16 16 41 H 0.04 0.87 7.41 -2.39 -0.02 0.86 16 42 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -83.84 358.35 1.92 -81.92 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.48 Total: 15.67 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 6.12 Total: 12.92 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -5.35 Total: -127.11 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -1.17 Total: -32.46 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 1.90 Total: 50.48 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.07 Total: -1.43 kcal Total: -83.84 1.92 -81.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201483469.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.918 kcal (2) G-P(sol) polarization free energy of solvation -83.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds