Wall clock time and date at job start Tue Mar 31 2020 22:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00292 * 2 1 4 4 H 1.48499 * 109.47105 * 240.00090 * 3 2 1 5 5 H 1.48504 * 109.47018 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47069 * 120.00236 * 3 2 1 7 7 C 1.38811 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00370 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00167 * 359.97438 * 7 2 1 10 10 C 1.46491 * 120.00320 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47423 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.46818 * 304.99608 * 11 10 9 13 13 C 1.54801 * 109.47194 * 184.99814 * 11 10 9 14 14 N 1.45121 * 109.53026 * 172.10509 * 13 11 10 15 15 C 1.34775 * 118.75579 * 269.28927 * 14 13 11 16 16 O 1.21514 * 120.00222 * 186.28190 * 15 14 13 17 17 C 1.48086 * 119.99996 * 6.29029 * 15 14 13 18 18 N 1.32778 * 119.73584 * 6.39888 * 17 15 14 19 19 C 1.31467 * 121.65106 * 180.02562 * 18 17 15 20 20 C 1.38640 * 120.94587 * 0.27476 * 19 18 17 21 21 C 1.38515 * 119.36966 * 359.47950 * 20 19 18 22 22 C 1.38801 * 118.47902 * 0.50647 * 21 20 19 23 23 Cl 1.73598 * 120.48740 * 179.75522 * 22 21 20 24 24 C 1.47502 * 122.48554 * 89.57078 * 14 13 11 25 25 C 1.53949 * 110.82287 * 317.97265 * 24 14 13 26 26 C 1.51538 * 109.72685 * 320.31348 * 25 24 14 27 27 O 1.38010 * 109.46769 * 64.98302 * 11 10 9 28 28 H 0.97001 * 119.99730 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99660 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47445 * 59.99606 * 10 9 7 31 31 H 1.08999 * 109.47043 * 299.99719 * 10 9 7 32 32 H 1.08999 * 109.45997 * 52.08585 * 13 11 10 33 33 H 1.09004 * 109.46169 * 292.12623 * 13 11 10 34 34 H 1.08006 * 119.52246 * 180.02562 * 19 18 17 35 35 H 1.07999 * 120.31418 * 179.72314 * 20 19 18 36 36 H 1.08005 * 120.75942 * 180.22069 * 21 20 19 37 37 H 1.09004 * 109.16966 * 78.49572 * 24 14 13 38 38 H 1.09000 * 109.16714 * 197.69360 * 24 14 13 39 39 H 1.08991 * 109.46468 * 200.17385 * 25 24 14 40 40 H 1.09004 * 109.27731 * 80.31946 * 25 24 14 41 41 H 1.09001 * 109.58352 * 331.50229 * 26 25 24 42 42 H 1.09001 * 109.58537 * 211.07412 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8198 0.0001 12 1 0.3800 -4.7127 0.8422 13 6 1.8335 -6.1568 0.1273 14 7 0.8905 -7.2436 0.3155 15 6 0.5436 -7.5909 1.5707 16 8 -0.1532 -8.5682 1.7601 17 6 1.0114 -6.7814 2.7190 18 7 1.6638 -5.6455 2.5018 19 6 2.0963 -4.8979 3.4930 20 6 1.8906 -5.2734 4.8116 21 6 1.2099 -6.4484 5.0850 22 6 0.7643 -7.2184 4.0197 23 17 -0.0888 -8.7037 4.3025 24 6 0.3019 -7.9865 -0.8147 25 6 -0.0946 -7.0281 -1.9524 26 6 -0.6928 -5.7632 -1.3705 27 8 0.3461 -4.8121 -1.1787 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.6847 -3.7146 0.8894 31 1 2.6846 -3.7146 -0.8905 32 1 2.5071 -6.1080 0.9829 33 1 2.4117 -6.3307 -0.7803 34 1 2.6229 -3.9800 3.2768 35 1 2.2542 -4.6538 5.6179 36 1 1.0340 -6.7606 6.1039 37 1 1.0296 -8.7077 -1.1867 38 1 -0.5845 -8.5191 -0.4701 39 1 -0.8274 -7.5131 -2.5970 40 1 0.7912 -6.7757 -2.5354 41 1 -1.1634 -5.9883 -0.4134 42 1 -1.4351 -5.3597 -2.0592 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201900430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:49 Heat of formation + Delta-G solvation = 6.981711 kcal Electronic energy + Delta-G solvation = -28372.687142 eV Core-core repulsion = 24380.956176 eV Total energy + Delta-G solvation = -3991.730966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.19776 -39.60400 -38.35599 -36.71226 -35.30357 -34.72518 -33.37239 -32.36573 -31.46172 -30.76951 -28.62009 -26.73853 -25.45523 -24.39155 -23.72720 -22.64839 -21.50370 -20.85281 -19.82258 -17.69991 -17.45323 -17.11628 -16.56007 -16.35591 -16.22466 -15.58855 -15.39287 -14.98650 -14.64725 -14.33216 -14.21543 -13.69291 -13.45055 -13.37737 -13.13568 -13.00259 -12.53815 -12.38759 -12.23997 -12.19054 -11.92773 -11.74633 -11.34133 -11.19561 -10.86940 -10.76523 -10.67991 -10.31662 -10.11960 -9.99527 -9.89321 -9.65166 -9.34499 -9.21309 -9.12319 -8.80505 -8.40654 -6.81740 -5.68319 -2.95975 0.33185 0.80377 1.88477 2.58626 2.81937 3.46842 3.51632 3.52786 3.54333 3.90398 4.11459 4.34618 4.49140 4.63284 4.64518 4.79290 4.92964 5.01896 5.07338 5.18970 5.34250 5.42279 5.47926 5.54168 5.64205 5.65796 5.70916 5.74046 5.80491 5.96645 6.07765 6.13638 6.24576 6.33191 6.41158 6.53525 6.76751 6.89866 7.23474 7.47051 7.74347 8.03253 8.16597 8.50215 9.61394 10.22085 10.57321 11.54508 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012245 B = 0.004038 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.039095 B = 6931.763202 C = 8657.514359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.172 3.828 11 C 0.101 3.899 12 H 0.052 0.948 13 C 0.072 3.928 14 N -0.589 5.589 15 C 0.560 3.440 16 O -0.519 6.519 17 C 0.082 3.918 18 N -0.425 5.425 19 C 0.106 3.894 20 C -0.134 4.134 21 C -0.078 4.078 22 C -0.041 4.041 23 Cl -0.023 7.023 24 C 0.112 3.888 25 C -0.165 4.165 26 C 0.075 3.925 27 O -0.374 6.374 28 H 0.254 0.746 29 H 0.386 0.614 30 H 0.036 0.964 31 H 0.021 0.979 32 H 0.118 0.882 33 H 0.073 0.927 34 H 0.177 0.823 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.045 0.955 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.839 -17.916 7.315 19.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.370 5.370 10 C 0.044 3.956 11 C 0.041 3.959 12 H 0.070 0.930 13 C -0.052 4.052 14 N -0.321 5.321 15 C 0.346 3.654 16 O -0.394 6.394 17 C -0.057 4.057 18 N -0.137 5.137 19 C -0.053 4.053 20 C -0.154 4.154 21 C -0.105 4.105 22 C -0.071 4.071 23 Cl 0.006 6.994 24 C -0.010 4.010 25 C -0.203 4.203 26 C -0.002 4.002 27 O -0.292 6.292 28 H 0.064 0.936 29 H 0.219 0.781 30 H 0.054 0.946 31 H 0.039 0.961 32 H 0.136 0.864 33 H 0.091 0.909 34 H 0.194 0.806 35 H 0.168 0.832 36 H 0.167 0.833 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.063 0.937 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.689 -18.111 6.388 19.392 hybrid contribution -0.088 0.499 1.085 1.198 sum 2.600 -17.612 7.474 19.308 Atomic orbital electron populations 1.69670 1.05086 1.25511 1.57851 1.24711 0.95440 0.97508 1.03340 0.86307 0.78491 0.83838 0.77760 1.21358 1.21825 1.21406 1.19171 0.90878 0.84201 1.42434 0.91323 1.42249 1.05977 0.99556 1.89222 1.20538 0.92392 0.84484 0.98164 1.22149 0.93498 0.93779 0.86491 0.92986 1.23042 0.92253 0.86076 1.03811 1.47803 1.44368 1.34774 1.05111 1.17923 0.80828 0.83943 0.82658 1.90840 1.37950 1.26146 1.84487 1.21073 0.98815 0.93791 0.91999 1.68475 1.07481 1.02961 1.34750 1.23306 0.95464 0.98482 0.88064 1.22458 0.97691 0.96173 0.99111 1.21581 0.96040 0.93855 0.99007 1.21954 0.99075 0.91824 0.94296 1.98417 1.74534 1.30439 1.96025 1.21940 0.99197 0.93765 0.86104 1.22561 1.02724 0.97122 0.97877 1.22072 0.89896 0.88400 0.99806 1.86410 1.48074 1.55558 1.39154 0.93619 0.78074 0.94638 0.96070 0.86428 0.90872 0.80565 0.83223 0.83276 0.91564 0.89245 0.89791 0.90099 0.93687 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.42 13.06 55.49 0.72 -27.70 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.90 22.24 29.55 -169.99 -5.02 17.22 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.73 -18.52 5.54 -59.91 -0.33 -18.85 16 10 C 0.17 3.45 5.92 -4.04 -0.02 3.43 16 11 C 0.10 1.75 1.81 -25.78 -0.05 1.71 16 12 H 0.05 1.00 7.04 -51.93 -0.37 0.64 16 13 C 0.07 1.02 4.40 -3.83 -0.02 1.00 16 14 N -0.59 -8.17 2.18 -173.27 -0.38 -8.54 16 15 C 0.56 8.42 7.59 -12.22 -0.09 8.33 16 16 O -0.52 -8.49 13.34 5.35 0.07 -8.41 16 17 C 0.08 1.14 6.53 -82.98 -0.54 0.60 16 18 N -0.42 -5.71 4.16 -9.77 -0.04 -5.75 16 19 C 0.11 1.19 11.18 -17.56 -0.20 0.99 16 20 C -0.13 -1.19 10.11 -39.33 -0.40 -1.58 16 21 C -0.08 -0.74 9.98 -39.27 -0.39 -1.13 16 22 C -0.04 -0.51 6.37 -38.93 -0.25 -0.76 16 23 Cl -0.02 -0.29 26.06 -51.86 -1.35 -1.65 16 24 C 0.11 1.32 6.15 -3.00 -0.02 1.31 16 25 C -0.16 -1.89 5.79 -26.98 -0.16 -2.04 16 26 C 0.08 1.10 6.37 36.42 0.23 1.33 16 27 O -0.37 -6.87 9.38 -26.52 -0.25 -7.12 16 28 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.39 10.71 7.65 -40.82 -0.31 10.40 16 30 H 0.04 0.66 7.99 -51.93 -0.42 0.25 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.12 1.62 5.19 -52.37 -0.27 1.35 16 33 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 34 H 0.18 1.84 8.06 -52.48 -0.42 1.41 16 35 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.10 7.07 -51.93 -0.37 0.73 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.96 8.01 -51.93 -0.42 0.55 16 41 H 0.04 0.69 7.41 -51.93 -0.38 0.31 16 42 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 353.64 15.07 5.33 5.33 Total: -1.00 -33.32 353.64 -8.85 -42.17 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -5.46 Total: 7.30 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -2.14 Total: 6.00 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: -0.03 Total: -60.85 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.18 Total: -15.53 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.35 Total: -1.65 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.32 -8.85 -42.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201900430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.150 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds