Wall clock time and date at job start Tue Mar 31 2020 22:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00292 * 2 1 4 4 H 1.48499 * 109.47105 * 240.00090 * 3 2 1 5 5 H 1.48504 * 109.47018 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47069 * 120.00236 * 3 2 1 7 7 C 1.38811 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00370 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00167 * 359.97438 * 7 2 1 10 10 C 1.46491 * 120.00320 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47423 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.46818 * 304.99608 * 11 10 9 13 13 C 1.54801 * 109.47194 * 184.99814 * 11 10 9 14 14 N 1.45121 * 109.53026 * 172.10509 * 13 11 10 15 15 C 1.34775 * 118.75579 * 269.28927 * 14 13 11 16 16 O 1.21514 * 120.00222 * 186.28190 * 15 14 13 17 17 C 1.48086 * 119.99996 * 6.29029 * 15 14 13 18 18 N 1.32778 * 119.73584 * 6.39888 * 17 15 14 19 19 C 1.31467 * 121.65106 * 180.02562 * 18 17 15 20 20 C 1.38640 * 120.94587 * 0.27476 * 19 18 17 21 21 C 1.38515 * 119.36966 * 359.47950 * 20 19 18 22 22 C 1.38801 * 118.47902 * 0.50647 * 21 20 19 23 23 Cl 1.73598 * 120.48740 * 179.75522 * 22 21 20 24 24 C 1.47502 * 122.48554 * 89.57078 * 14 13 11 25 25 C 1.53949 * 110.82287 * 317.97265 * 24 14 13 26 26 C 1.51538 * 109.72685 * 320.31348 * 25 24 14 27 27 O 1.38010 * 109.46769 * 64.98302 * 11 10 9 28 28 H 0.97001 * 119.99730 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99660 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47445 * 59.99606 * 10 9 7 31 31 H 1.08999 * 109.47043 * 299.99719 * 10 9 7 32 32 H 1.08999 * 109.45997 * 52.08585 * 13 11 10 33 33 H 1.09004 * 109.46169 * 292.12623 * 13 11 10 34 34 H 1.08006 * 119.52246 * 180.02562 * 19 18 17 35 35 H 1.07999 * 120.31418 * 179.72314 * 20 19 18 36 36 H 1.08005 * 120.75942 * 180.22069 * 21 20 19 37 37 H 1.09004 * 109.16966 * 78.49572 * 24 14 13 38 38 H 1.09000 * 109.16714 * 197.69360 * 24 14 13 39 39 H 1.08991 * 109.46468 * 200.17385 * 25 24 14 40 40 H 1.09004 * 109.27731 * 80.31946 * 25 24 14 41 41 H 1.09001 * 109.58352 * 331.50229 * 26 25 24 42 42 H 1.09001 * 109.58537 * 211.07412 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8198 0.0001 12 1 0.3800 -4.7127 0.8422 13 6 1.8335 -6.1568 0.1273 14 7 0.8905 -7.2436 0.3155 15 6 0.5436 -7.5909 1.5707 16 8 -0.1532 -8.5682 1.7601 17 6 1.0114 -6.7814 2.7190 18 7 1.6638 -5.6455 2.5018 19 6 2.0963 -4.8979 3.4930 20 6 1.8906 -5.2734 4.8116 21 6 1.2099 -6.4484 5.0850 22 6 0.7643 -7.2184 4.0197 23 17 -0.0888 -8.7037 4.3025 24 6 0.3019 -7.9865 -0.8147 25 6 -0.0946 -7.0281 -1.9524 26 6 -0.6928 -5.7632 -1.3705 27 8 0.3461 -4.8121 -1.1787 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.6847 -3.7146 0.8894 31 1 2.6846 -3.7146 -0.8905 32 1 2.5071 -6.1080 0.9829 33 1 2.4117 -6.3307 -0.7803 34 1 2.6229 -3.9800 3.2768 35 1 2.2542 -4.6538 5.6179 36 1 1.0340 -6.7606 6.1039 37 1 1.0296 -8.7077 -1.1867 38 1 -0.5845 -8.5191 -0.4701 39 1 -0.8274 -7.5131 -2.5970 40 1 0.7912 -6.7757 -2.5354 41 1 -1.1634 -5.9883 -0.4134 42 1 -1.4351 -5.3597 -2.0592 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201900430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:48 Heat of formation + Delta-G solvation = -13.891268 kcal Electronic energy + Delta-G solvation = -28373.592262 eV Core-core repulsion = 24380.956176 eV Total energy + Delta-G solvation = -3992.636086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.21764 -40.64862 -39.57473 -37.65179 -36.65365 -36.26470 -34.66984 -33.45631 -32.77942 -32.11062 -30.10034 -27.88379 -26.91280 -25.58738 -24.61524 -24.32056 -22.65878 -22.24829 -20.86097 -19.15579 -18.73582 -18.45494 -17.62281 -17.47899 -17.28411 -16.71737 -16.69852 -16.18204 -16.15401 -15.57399 -15.34757 -15.03933 -14.70737 -14.60015 -14.47430 -14.36769 -13.77732 -13.54579 -13.45664 -13.26929 -13.17689 -12.90872 -12.71107 -12.66917 -12.39125 -12.25665 -12.10895 -11.86181 -11.73829 -11.46800 -11.08420 -10.87942 -10.84457 -10.55634 -10.17980 -10.10987 -9.56870 -8.89694 -7.85501 -5.13649 -0.57219 -0.02022 0.97388 1.51897 1.55609 1.56388 1.61371 1.80344 2.60849 2.62880 2.83486 2.92921 3.47956 3.48913 3.68514 3.75190 3.86090 3.86919 4.05828 4.13486 4.16009 4.25934 4.32274 4.36077 4.50434 4.52496 4.64717 4.73385 4.78647 4.79621 4.92155 4.95388 5.02302 5.13287 5.20887 5.30043 5.45843 5.50446 5.57036 6.14113 6.34695 6.55355 6.83951 6.96157 7.41374 8.18413 8.42454 9.38394 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012245 B = 0.004038 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.039095 B = 6931.763202 C = 8657.514359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.281 1.281 5 H -0.301 1.301 6 H -0.272 1.272 7 C -0.236 4.236 8 H 0.081 0.919 9 N -0.739 5.739 10 C 0.173 3.827 11 C 0.115 3.885 12 H 0.030 0.970 13 C 0.087 3.913 14 N -0.590 5.590 15 C 0.554 3.446 16 O -0.540 6.540 17 C 0.055 3.945 18 N -0.445 5.445 19 C 0.089 3.911 20 C -0.113 4.113 21 C -0.072 4.072 22 C -0.051 4.051 23 Cl -0.032 7.032 24 C 0.109 3.891 25 C -0.152 4.152 26 C 0.071 3.929 27 O -0.403 6.403 28 H 0.248 0.752 29 H 0.370 0.630 30 H 0.056 0.944 31 H 0.018 0.982 32 H 0.125 0.875 33 H 0.084 0.916 34 H 0.182 0.818 35 H 0.189 0.811 36 H 0.181 0.819 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.031 0.969 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.458 -18.247 8.178 20.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.269 4.269 3 Si 0.802 3.198 4 H -0.207 1.207 5 H -0.227 1.227 6 H -0.198 1.198 7 C -0.368 4.368 8 H 0.099 0.901 9 N -0.380 5.380 10 C 0.046 3.954 11 C 0.055 3.945 12 H 0.048 0.952 13 C -0.037 4.037 14 N -0.321 5.321 15 C 0.341 3.659 16 O -0.417 6.417 17 C -0.083 4.083 18 N -0.157 5.157 19 C -0.070 4.070 20 C -0.133 4.133 21 C -0.098 4.098 22 C -0.081 4.081 23 Cl -0.003 7.003 24 C -0.012 4.012 25 C -0.189 4.189 26 C -0.005 4.005 27 O -0.322 6.322 28 H 0.057 0.943 29 H 0.201 0.799 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.142 0.858 33 H 0.102 0.898 34 H 0.199 0.801 35 H 0.206 0.794 36 H 0.199 0.801 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.131 0.869 40 H 0.099 0.901 41 H 0.049 0.951 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.352 -18.485 7.243 20.325 hybrid contribution -0.592 0.580 0.852 1.188 sum 3.760 -17.905 8.095 20.007 Atomic orbital electron populations 1.69854 1.06817 1.25797 1.59987 1.25542 0.96231 1.01032 1.04127 0.85223 0.77103 0.79200 0.78296 1.20707 1.22729 1.19803 1.19633 0.91565 0.85090 1.40516 0.90140 1.42453 1.05433 1.00985 1.89173 1.20692 0.92809 0.83368 0.98550 1.21872 0.92712 0.94448 0.85439 0.95233 1.22823 0.91826 0.84467 1.04608 1.47873 1.44232 1.34508 1.05476 1.18228 0.80521 0.83885 0.83299 1.90813 1.38924 1.27107 1.84885 1.20985 1.00618 0.94423 0.92259 1.68327 1.08141 1.03146 1.36077 1.23581 0.95749 0.98594 0.89040 1.22826 0.95690 0.95769 0.98992 1.21981 0.94874 0.93307 0.99679 1.22168 0.99346 0.91943 0.94674 1.98409 1.74814 1.31102 1.95960 1.22089 0.99525 0.93973 0.85611 1.22465 1.03259 0.95418 0.97808 1.22244 0.89432 0.89325 0.99499 1.86337 1.49101 1.57406 1.39400 0.94340 0.79907 0.92649 0.96376 0.85769 0.89797 0.80068 0.79392 0.80136 0.89578 0.89756 0.86874 0.90051 0.95076 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.46 13.06 21.65 0.28 -60.17 16 2 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 3 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.24 -13.03 9.99 84.03 0.84 -12.19 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.74 -38.07 5.54 -343.47 -1.90 -39.97 16 10 C 0.17 6.89 5.92 86.38 0.51 7.40 16 11 C 0.12 4.04 1.81 31.21 0.06 4.09 16 12 H 0.03 1.18 7.04 -2.39 -0.02 1.16 16 13 C 0.09 2.41 4.40 87.25 0.38 2.79 16 14 N -0.59 -16.14 2.18 -820.40 -1.79 -17.93 16 15 C 0.55 16.72 7.59 86.86 0.66 17.38 16 16 O -0.54 -17.84 13.34 -3.76 -0.05 -17.89 16 17 C 0.05 1.51 6.53 41.90 0.27 1.78 16 18 N -0.44 -11.76 4.16 -184.84 -0.77 -12.53 16 19 C 0.09 1.89 11.18 84.84 0.95 2.84 16 20 C -0.11 -1.67 10.11 22.43 0.23 -1.45 16 21 C -0.07 -1.19 9.98 22.47 0.22 -0.96 16 22 C -0.05 -1.21 6.37 22.69 0.14 -1.06 16 23 Cl -0.03 -0.79 26.06 -2.72 -0.07 -0.86 16 24 C 0.11 2.47 6.15 86.51 0.53 3.00 16 25 C -0.15 -3.27 5.79 30.44 0.18 -3.09 16 26 C 0.07 2.09 6.37 71.50 0.46 2.55 16 27 O -0.40 -15.00 9.38 -117.81 -1.11 -16.10 16 28 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 29 H 0.37 21.15 7.65 -92.71 -0.71 20.45 16 30 H 0.06 2.01 7.99 -2.39 -0.02 1.99 16 31 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.13 3.34 5.19 -3.25 -0.02 3.32 16 33 H 0.08 2.15 8.11 -2.39 -0.02 2.13 16 34 H 0.18 3.53 8.06 -2.91 -0.02 3.50 16 35 H 0.19 1.32 8.06 -2.91 -0.02 1.29 16 36 H 0.18 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.08 2.02 7.07 -2.39 -0.02 2.00 16 39 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.08 1.79 8.01 -2.38 -0.02 1.78 16 41 H 0.03 0.99 7.41 -2.39 -0.02 0.97 16 42 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -73.24 353.64 2.87 -70.37 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 0.34 Total: 28.29 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 5.90 Total: 19.10 kcal Atomic # 7 Polarization: -126.43 SS G_CDS: -4.18 Total: -130.60 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -1.16 Total: -33.99 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.07 Total: -0.86 kcal Total: -73.24 2.87 -70.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201900430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.480 kcal (2) G-P(sol) polarization free energy of solvation -73.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds