Wall clock time and date at job start Tue Mar 31 2020 22:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00176 * 2 1 4 4 H 1.48500 * 109.46862 * 240.00318 * 3 2 1 5 5 H 1.48504 * 109.46728 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47241 * 120.00129 * 3 2 1 7 7 C 1.38816 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00377 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99566 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99751 * 180.27727 * 9 7 2 11 11 C 1.52998 * 109.47086 * 179.72165 * 10 9 7 12 12 H 1.08995 * 109.47308 * 60.00005 * 11 10 9 13 13 C 1.54806 * 109.46946 * 179.97438 * 11 10 9 14 14 N 1.45125 * 109.53826 * 187.87920 * 13 11 10 15 15 C 1.34777 * 118.76172 * 90.71679 * 14 13 11 16 16 O 1.21523 * 120.00168 * 173.75170 * 15 14 13 17 17 C 1.48083 * 119.99625 * 353.74986 * 15 14 13 18 18 N 1.32778 * 119.73822 * 353.82698 * 17 15 14 19 19 C 1.31465 * 121.65305 * 179.97438 * 18 17 15 20 20 C 1.38641 * 120.94204 * 0.02562 * 19 18 17 21 21 C 1.38508 * 119.37870 * 359.97438 * 20 19 18 22 22 C 1.38812 * 118.47280 * 359.73625 * 21 20 19 23 23 Cl 1.73604 * 120.48624 * 180.26042 * 22 21 20 24 24 C 1.47507 * 122.48284 * 270.73277 * 14 13 11 25 25 C 1.53580 * 111.02871 * 41.61474 * 24 14 13 26 26 C 1.51531 * 109.57920 * 39.97257 * 25 24 14 27 27 O 1.38014 * 109.47120 * 300.00296 * 11 10 9 28 28 H 0.97004 * 119.99856 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00336 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46675 * 299.71660 * 10 9 7 31 31 H 1.09004 * 109.47591 * 59.71761 * 10 9 7 32 32 H 1.09004 * 109.45970 * 307.89636 * 13 11 10 33 33 H 1.08996 * 109.46490 * 67.85462 * 13 11 10 34 34 H 1.07998 * 119.52729 * 180.02562 * 19 18 17 35 35 H 1.08005 * 120.31131 * 180.02562 * 20 19 18 36 36 H 1.07997 * 120.76716 * 180.02562 * 21 20 19 37 37 H 1.09006 * 109.16695 * 162.00574 * 24 14 13 38 38 H 1.08998 * 109.17267 * 281.21752 * 24 14 13 39 39 H 1.09003 * 109.45213 * 160.01027 * 25 24 14 40 40 H 1.09006 * 109.44998 * 279.94251 * 25 24 14 41 41 H 1.09000 * 109.59428 * 28.38338 * 26 25 24 42 42 H 1.09003 * 109.58943 * 148.82280 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0128 12 1 0.4374 -4.7665 -0.8777 13 6 1.8378 -6.1603 0.0192 14 7 0.9072 -7.2589 -0.1631 15 6 0.6429 -7.6841 -1.4144 16 8 -0.0422 -8.6726 -1.5883 17 6 1.1873 -6.9465 -2.5774 18 7 1.8307 -5.8005 -2.3881 19 6 2.3294 -5.1152 -3.3930 20 6 2.2007 -5.5669 -4.6974 21 6 1.5371 -6.7578 -4.9418 22 6 1.0256 -7.4640 -3.8618 23 17 0.1904 -8.9660 -4.1075 24 6 0.2395 -7.9276 0.9695 25 6 -0.2245 -6.9052 2.0174 26 6 -0.7805 -5.6801 1.3202 27 8 0.2698 -4.7408 1.1389 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3881 0.0005 30 1 2.6849 -3.7190 -0.8823 31 1 2.6844 -3.7101 0.8977 32 1 2.5661 -6.1630 -0.7918 33 1 2.3549 -6.2766 0.9716 34 1 2.8468 -4.1872 -3.1996 35 1 2.6148 -4.9959 -5.5154 36 1 1.4242 -7.1307 -5.9490 37 1 -0.6253 -8.4790 0.6002 38 1 0.9359 -8.6255 1.4343 39 1 -0.9993 -7.3509 2.6413 40 1 0.6213 -6.6154 2.6411 41 1 -1.1874 -5.9649 0.3499 42 1 -1.5658 -5.2362 1.9321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201900432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:52 Heat of formation + Delta-G solvation = 7.263445 kcal Electronic energy + Delta-G solvation = -28352.297988 eV Core-core repulsion = 24360.579239 eV Total energy + Delta-G solvation = -3991.718749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.21124 -39.61887 -38.36157 -36.72551 -35.31303 -34.71802 -33.38349 -32.37956 -31.47693 -30.77032 -28.62988 -26.73030 -25.46073 -24.39870 -23.74696 -22.65546 -21.50954 -20.83269 -19.82214 -17.70894 -17.46703 -17.11412 -16.57639 -16.35217 -16.23703 -15.60108 -15.40424 -14.99285 -14.65023 -14.34243 -14.21610 -13.70948 -13.44953 -13.38534 -13.13605 -13.00021 -12.54979 -12.39654 -12.25968 -12.19238 -11.91917 -11.73637 -11.34981 -11.18986 -10.87256 -10.76076 -10.67815 -10.32040 -10.12206 -10.00472 -9.89803 -9.64366 -9.34622 -9.22400 -9.12861 -8.79786 -8.40729 -6.80908 -5.67554 -2.95146 0.31428 0.78356 1.87061 2.57370 2.81352 3.47303 3.51929 3.52742 3.53207 3.88947 4.12174 4.33101 4.47042 4.61196 4.65019 4.80435 4.92586 5.01013 5.05122 5.18863 5.34273 5.42378 5.47014 5.53991 5.64678 5.66075 5.68805 5.74176 5.80663 5.96916 6.06437 6.14177 6.24672 6.32618 6.41707 6.53246 6.76797 6.89725 7.22971 7.45227 7.74721 8.02587 8.17344 8.51025 9.62269 10.23202 10.58691 11.55249 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012520 B = 0.003963 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.930423 B = 7062.938597 C = 8751.834399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.172 3.828 11 C 0.101 3.899 12 H 0.051 0.949 13 C 0.071 3.929 14 N -0.588 5.588 15 C 0.560 3.440 16 O -0.519 6.519 17 C 0.082 3.918 18 N -0.425 5.425 19 C 0.105 3.895 20 C -0.134 4.134 21 C -0.078 4.078 22 C -0.041 4.041 23 Cl -0.023 7.023 24 C 0.112 3.888 25 C -0.165 4.165 26 C 0.075 3.925 27 O -0.372 6.372 28 H 0.254 0.746 29 H 0.386 0.614 30 H 0.036 0.964 31 H 0.021 0.979 32 H 0.119 0.881 33 H 0.073 0.927 34 H 0.177 0.823 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.270 -18.363 -6.963 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.370 5.370 10 C 0.044 3.956 11 C 0.041 3.959 12 H 0.069 0.931 13 C -0.052 4.052 14 N -0.320 5.320 15 C 0.346 3.654 16 O -0.394 6.394 17 C -0.056 4.056 18 N -0.137 5.137 19 C -0.054 4.054 20 C -0.154 4.154 21 C -0.105 4.105 22 C -0.071 4.071 23 Cl 0.006 6.994 24 C -0.010 4.010 25 C -0.203 4.203 26 C -0.002 4.002 27 O -0.290 6.290 28 H 0.064 0.936 29 H 0.220 0.780 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.136 0.864 33 H 0.092 0.908 34 H 0.194 0.806 35 H 0.168 0.832 36 H 0.167 0.833 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.063 0.937 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.061 -18.503 -6.040 19.703 hybrid contribution -0.010 0.428 -1.061 1.145 sum 3.050 -18.075 -7.101 19.658 Atomic orbital electron populations 1.69668 1.05086 1.25497 1.57823 1.24712 0.95438 0.97500 1.03338 0.86309 0.78495 0.83854 0.77752 1.21409 1.21822 1.21362 1.19174 0.90871 0.84224 1.42460 0.91338 1.42239 1.06043 0.99513 1.89173 1.20545 0.92354 0.84545 0.98130 1.22141 0.92271 0.93803 0.87680 0.93115 1.23056 0.92768 0.85825 1.03595 1.47806 1.44145 1.34722 1.05337 1.17922 0.80944 0.83843 0.82670 1.90844 1.38684 1.24882 1.85008 1.21075 0.98908 0.93385 0.92257 1.68474 1.06827 1.04337 1.34060 1.23299 0.95271 0.98876 0.87982 1.22454 0.98005 0.95704 0.99278 1.21584 0.95779 0.94332 0.98773 1.21962 0.99113 0.91634 0.94424 1.98419 1.75490 1.28830 1.96629 1.21864 0.97971 0.94656 0.86489 1.22505 1.02555 0.96904 0.98363 1.22067 0.89892 0.88979 0.99248 1.86402 1.44593 1.54161 1.43880 0.93623 0.77977 0.94678 0.96162 0.86385 0.90847 0.80601 0.83219 0.83261 0.89250 0.91594 0.89767 0.90059 0.93729 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.50 13.06 55.49 0.72 -27.77 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.90 22.30 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.73 -18.60 5.49 -59.91 -0.33 -18.92 16 10 C 0.17 3.46 5.95 -4.04 -0.02 3.44 16 11 C 0.10 1.76 1.87 -25.78 -0.05 1.71 16 12 H 0.05 0.97 7.06 -51.93 -0.37 0.61 16 13 C 0.07 1.01 4.40 -3.83 -0.02 0.99 16 14 N -0.59 -8.15 2.19 -173.49 -0.38 -8.53 16 15 C 0.56 8.38 7.59 -12.22 -0.09 8.28 16 16 O -0.52 -8.45 13.34 5.35 0.07 -8.38 16 17 C 0.08 1.13 6.53 -82.98 -0.54 0.59 16 18 N -0.43 -5.63 4.13 -9.78 -0.04 -5.67 16 19 C 0.10 1.15 11.16 -17.56 -0.20 0.95 16 20 C -0.13 -1.15 10.11 -39.33 -0.40 -1.55 16 21 C -0.08 -0.72 9.98 -39.27 -0.39 -1.11 16 22 C -0.04 -0.50 6.37 -38.93 -0.25 -0.75 16 23 Cl -0.02 -0.29 26.06 -51.86 -1.35 -1.64 16 24 C 0.11 1.33 6.12 -3.19 -0.02 1.31 16 25 C -0.16 -1.91 5.79 -27.17 -0.16 -2.07 16 26 C 0.08 1.11 6.37 36.41 0.23 1.34 16 27 O -0.37 -6.88 9.18 -26.53 -0.24 -7.13 16 28 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.39 10.78 7.53 -40.82 -0.31 10.48 16 30 H 0.04 0.66 7.82 -51.93 -0.41 0.25 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.12 1.62 5.17 -52.54 -0.27 1.34 16 33 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 34 H 0.18 1.75 7.94 -52.49 -0.42 1.33 16 35 H 0.15 0.82 8.06 -52.48 -0.42 0.39 16 36 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.09 1.10 7.08 -51.93 -0.37 0.73 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.98 8.01 -51.93 -0.42 0.57 16 41 H 0.04 0.69 7.40 -51.93 -0.38 0.30 16 42 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 353.00 15.07 5.32 5.32 Total: -1.00 -33.50 353.00 -8.84 -42.34 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.44 Total: 7.19 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -2.15 Total: 5.93 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: -0.02 Total: -60.90 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.17 Total: -15.51 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.35 Total: -1.64 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.50 -8.84 -42.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201900432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.604 kcal (2) G-P(sol) polarization free energy of solvation -33.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds