Wall clock time and date at job start Tue Mar 31 2020 22:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00176 * 2 1 4 4 H 1.48500 * 109.46862 * 240.00318 * 3 2 1 5 5 H 1.48504 * 109.46728 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47241 * 120.00129 * 3 2 1 7 7 C 1.38816 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00377 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99566 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99751 * 180.27727 * 9 7 2 11 11 C 1.52998 * 109.47086 * 179.72165 * 10 9 7 12 12 H 1.08995 * 109.47308 * 60.00005 * 11 10 9 13 13 C 1.54806 * 109.46946 * 179.97438 * 11 10 9 14 14 N 1.45125 * 109.53826 * 187.87920 * 13 11 10 15 15 C 1.34777 * 118.76172 * 90.71679 * 14 13 11 16 16 O 1.21523 * 120.00168 * 173.75170 * 15 14 13 17 17 C 1.48083 * 119.99625 * 353.74986 * 15 14 13 18 18 N 1.32778 * 119.73822 * 353.82698 * 17 15 14 19 19 C 1.31465 * 121.65305 * 179.97438 * 18 17 15 20 20 C 1.38641 * 120.94204 * 0.02562 * 19 18 17 21 21 C 1.38508 * 119.37870 * 359.97438 * 20 19 18 22 22 C 1.38812 * 118.47280 * 359.73625 * 21 20 19 23 23 Cl 1.73604 * 120.48624 * 180.26042 * 22 21 20 24 24 C 1.47507 * 122.48284 * 270.73277 * 14 13 11 25 25 C 1.53580 * 111.02871 * 41.61474 * 24 14 13 26 26 C 1.51531 * 109.57920 * 39.97257 * 25 24 14 27 27 O 1.38014 * 109.47120 * 300.00296 * 11 10 9 28 28 H 0.97004 * 119.99856 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00336 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46675 * 299.71660 * 10 9 7 31 31 H 1.09004 * 109.47591 * 59.71761 * 10 9 7 32 32 H 1.09004 * 109.45970 * 307.89636 * 13 11 10 33 33 H 1.08996 * 109.46490 * 67.85462 * 13 11 10 34 34 H 1.07998 * 119.52729 * 180.02562 * 19 18 17 35 35 H 1.08005 * 120.31131 * 180.02562 * 20 19 18 36 36 H 1.07997 * 120.76716 * 180.02562 * 21 20 19 37 37 H 1.09006 * 109.16695 * 162.00574 * 24 14 13 38 38 H 1.08998 * 109.17267 * 281.21752 * 24 14 13 39 39 H 1.09003 * 109.45213 * 160.01027 * 25 24 14 40 40 H 1.09006 * 109.44998 * 279.94251 * 25 24 14 41 41 H 1.09000 * 109.59428 * 28.38338 * 26 25 24 42 42 H 1.09003 * 109.58943 * 148.82280 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0128 12 1 0.4374 -4.7665 -0.8777 13 6 1.8378 -6.1603 0.0192 14 7 0.9072 -7.2589 -0.1631 15 6 0.6429 -7.6841 -1.4144 16 8 -0.0422 -8.6726 -1.5883 17 6 1.1873 -6.9465 -2.5774 18 7 1.8307 -5.8005 -2.3881 19 6 2.3294 -5.1152 -3.3930 20 6 2.2007 -5.5669 -4.6974 21 6 1.5371 -6.7578 -4.9418 22 6 1.0256 -7.4640 -3.8618 23 17 0.1904 -8.9660 -4.1075 24 6 0.2395 -7.9276 0.9695 25 6 -0.2245 -6.9052 2.0174 26 6 -0.7805 -5.6801 1.3202 27 8 0.2698 -4.7408 1.1389 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3881 0.0005 30 1 2.6849 -3.7190 -0.8823 31 1 2.6844 -3.7101 0.8977 32 1 2.5661 -6.1630 -0.7918 33 1 2.3549 -6.2766 0.9716 34 1 2.8468 -4.1872 -3.1996 35 1 2.6148 -4.9959 -5.5154 36 1 1.4242 -7.1307 -5.9490 37 1 -0.6253 -8.4790 0.6002 38 1 0.9359 -8.6255 1.4343 39 1 -0.9993 -7.3509 2.6413 40 1 0.6213 -6.6154 2.6411 41 1 -1.1874 -5.9649 0.3499 42 1 -1.5658 -5.2362 1.9321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201900432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:51 Heat of formation + Delta-G solvation = -13.771080 kcal Electronic energy + Delta-G solvation = -28353.210113 eV Core-core repulsion = 24360.579239 eV Total energy + Delta-G solvation = -3992.630874 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.22083 -40.65596 -39.57692 -37.65165 -36.65972 -36.25723 -34.68326 -33.45716 -32.78312 -32.11204 -30.11284 -27.87927 -26.91136 -25.58761 -24.61520 -24.33280 -22.65505 -22.23696 -20.85675 -19.15244 -18.73717 -18.46296 -17.62350 -17.47979 -17.29051 -16.72080 -16.69903 -16.18150 -16.15693 -15.57752 -15.35052 -15.03763 -14.70675 -14.60438 -14.47636 -14.36820 -13.78604 -13.54787 -13.45296 -13.26396 -13.16940 -12.91024 -12.71767 -12.66165 -12.39140 -12.25639 -12.11295 -11.86561 -11.73956 -11.46210 -11.08450 -10.87958 -10.84342 -10.55000 -10.17442 -10.11258 -9.56877 -8.89334 -7.85280 -5.13389 -0.57292 -0.02090 0.97501 1.51823 1.55620 1.56314 1.61372 1.80260 2.60816 2.63035 2.83709 2.92758 3.48021 3.48933 3.68356 3.75430 3.86696 3.86928 4.05584 4.13467 4.15859 4.25748 4.32213 4.36056 4.50474 4.53524 4.63896 4.73274 4.78533 4.79559 4.91685 4.95496 5.02189 5.13350 5.20680 5.30575 5.45650 5.50551 5.56836 6.14276 6.34861 6.55210 6.84599 6.96108 7.41686 8.19222 8.43168 9.38616 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012520 B = 0.003963 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.930423 B = 7062.938597 C = 8751.834399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.301 1.301 6 H -0.280 1.280 7 C -0.237 4.237 8 H 0.081 0.919 9 N -0.739 5.739 10 C 0.172 3.828 11 C 0.115 3.885 12 H 0.030 0.970 13 C 0.086 3.914 14 N -0.590 5.590 15 C 0.553 3.447 16 O -0.540 6.540 17 C 0.055 3.945 18 N -0.445 5.445 19 C 0.089 3.911 20 C -0.113 4.113 21 C -0.073 4.073 22 C -0.051 4.051 23 Cl -0.032 7.032 24 C 0.109 3.891 25 C -0.152 4.152 26 C 0.071 3.929 27 O -0.402 6.402 28 H 0.248 0.752 29 H 0.371 0.629 30 H 0.056 0.944 31 H 0.018 0.982 32 H 0.126 0.874 33 H 0.083 0.917 34 H 0.184 0.816 35 H 0.189 0.811 36 H 0.181 0.819 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.031 0.969 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.971 -18.688 -7.833 20.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.198 1.198 5 H -0.227 1.227 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.099 0.901 9 N -0.381 5.381 10 C 0.045 3.955 11 C 0.055 3.945 12 H 0.048 0.952 13 C -0.038 4.038 14 N -0.321 5.321 15 C 0.340 3.660 16 O -0.417 6.417 17 C -0.083 4.083 18 N -0.158 5.158 19 C -0.070 4.070 20 C -0.132 4.132 21 C -0.098 4.098 22 C -0.081 4.081 23 Cl -0.003 7.003 24 C -0.012 4.012 25 C -0.190 4.190 26 C -0.005 4.005 27 O -0.322 6.322 28 H 0.057 0.943 29 H 0.202 0.798 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.144 0.856 33 H 0.101 0.899 34 H 0.201 0.799 35 H 0.207 0.793 36 H 0.199 0.801 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.131 0.869 40 H 0.099 0.901 41 H 0.050 0.950 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.806 -18.872 -6.901 20.661 hybrid contribution -0.533 0.506 -0.836 1.113 sum 4.272 -18.366 -7.737 20.382 Atomic orbital electron populations 1.69853 1.06825 1.25791 1.59957 1.25549 0.96239 1.01050 1.04124 0.85220 0.77103 0.79185 0.78295 1.19834 1.22720 1.20659 1.19644 0.91577 0.85122 1.40554 0.90125 1.42447 1.05512 1.00969 1.89142 1.20710 0.92794 0.83388 0.98570 1.21875 0.91596 0.94437 0.86565 0.95236 1.22836 0.92355 0.84199 1.04377 1.47875 1.44074 1.34403 1.05721 1.18238 0.80653 0.83748 0.83312 1.90816 1.39679 1.25850 1.85393 1.20971 1.00701 0.94121 0.92463 1.68322 1.07515 1.04467 1.35482 1.23603 0.95411 0.99117 0.88870 1.22833 0.96066 0.95104 0.99240 1.21985 0.94546 0.93982 0.99335 1.22175 0.99471 0.91633 0.94849 1.98410 1.75804 1.29523 1.96576 1.22004 0.98226 0.94873 0.86061 1.22408 1.03212 0.95271 0.98100 1.22233 0.89381 0.89795 0.99085 1.86328 1.45636 1.56059 1.44140 0.94342 0.79816 0.92666 0.96366 0.85646 0.89907 0.79900 0.79329 0.80147 0.89733 0.89646 0.86870 0.90098 0.95024 0.88925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.63 13.06 21.65 0.28 -60.35 16 2 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 3 Si 0.97 45.78 29.55 68.60 2.03 47.81 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.24 -13.13 9.99 84.03 0.84 -12.29 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 9 N -0.74 -38.24 5.49 -343.44 -1.89 -40.12 16 10 C 0.17 6.87 5.95 86.38 0.51 7.39 16 11 C 0.12 4.04 1.87 31.21 0.06 4.10 16 12 H 0.03 1.17 7.06 -2.39 -0.02 1.15 16 13 C 0.09 2.40 4.40 87.25 0.38 2.78 16 14 N -0.59 -16.14 2.19 -821.08 -1.80 -17.94 16 15 C 0.55 16.63 7.59 86.86 0.66 17.29 16 16 O -0.54 -17.79 13.34 -3.79 -0.05 -17.84 16 17 C 0.05 1.50 6.53 41.90 0.27 1.77 16 18 N -0.45 -11.55 4.13 -184.85 -0.76 -12.32 16 19 C 0.09 1.81 11.16 84.84 0.95 2.76 16 20 C -0.11 -1.59 10.11 22.43 0.23 -1.36 16 21 C -0.07 -1.15 9.98 22.47 0.22 -0.93 16 22 C -0.05 -1.19 6.37 22.69 0.14 -1.04 16 23 Cl -0.03 -0.79 26.06 -2.72 -0.07 -0.86 16 24 C 0.11 2.49 6.12 86.38 0.53 3.02 16 25 C -0.15 -3.32 5.79 30.31 0.18 -3.15 16 26 C 0.07 2.11 6.37 71.50 0.46 2.57 16 27 O -0.40 -15.09 9.18 -117.85 -1.08 -16.17 16 28 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.37 21.28 7.53 -92.71 -0.70 20.58 16 30 H 0.06 2.00 7.82 -2.39 -0.02 1.98 16 31 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.13 3.35 5.17 -3.59 -0.02 3.33 16 33 H 0.08 2.14 8.11 -2.39 -0.02 2.12 16 34 H 0.18 3.33 7.94 -2.91 -0.02 3.31 16 35 H 0.19 1.17 8.06 -2.91 -0.02 1.15 16 36 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.08 2.03 7.08 -2.38 -0.02 2.02 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.08 1.82 8.01 -2.38 -0.02 1.80 16 41 H 0.03 1.00 7.40 -2.39 -0.02 0.99 16 42 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -73.70 353.00 2.91 -70.79 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 0.35 Total: 28.11 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 5.90 Total: 18.89 kcal Atomic # 7 Polarization: -126.56 SS G_CDS: -4.17 Total: -130.73 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.13 Total: -34.01 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.07 Total: -0.86 kcal Total: -73.70 2.91 -70.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201900432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.017 kcal (2) G-P(sol) polarization free energy of solvation -73.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds