Wall clock time and date at job start Tue Mar 31 2020 22:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86792 * 120.00038 * 2 1 4 4 H 1.48499 * 109.47063 * 270.00061 * 3 2 1 5 5 H 1.48500 * 109.47380 * 30.00163 * 3 2 1 6 6 H 1.48502 * 109.47326 * 150.00380 * 3 2 1 7 7 C 1.37877 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99996 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00214 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46675 * 180.02562 * 10 9 7 12 12 C 1.34782 * 119.99982 * 180.02562 * 11 10 9 13 13 O 1.21590 * 119.99827 * 359.97438 * 12 11 10 14 14 N 1.34769 * 120.00034 * 179.97438 * 12 11 10 15 15 C 1.46505 * 119.99718 * 174.95482 * 14 12 11 16 16 H 1.08999 * 109.47343 * 326.44905 * 15 14 12 17 17 C 1.53009 * 109.46774 * 206.45294 * 15 14 12 18 18 C 1.50696 * 109.46761 * 65.61801 * 17 15 14 19 19 N 1.34778 * 119.99757 * 175.53845 * 18 17 15 20 20 O 1.21280 * 120.00667 * 355.53464 * 18 17 15 21 21 C 1.50695 * 109.47443 * 86.45472 * 15 14 12 22 22 C 1.38237 * 120.00418 * 24.72215 * 21 15 14 23 23 C 1.38226 * 120.01140 * 179.75118 * 22 21 15 24 24 C 1.38257 * 120.02619 * 0.54589 * 23 22 21 25 25 C 1.38190 * 120.01272 * 359.70997 * 24 23 22 26 26 C 1.38328 * 120.01046 * 205.00196 * 21 15 14 27 27 Cl 1.73601 * 120.01129 * 359.97438 * 26 21 15 28 28 H 0.96993 * 120.00234 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46810 * 60.00332 * 9 7 2 30 30 H 1.09000 * 109.46803 * 300.00376 * 9 7 2 31 31 H 1.08996 * 109.47252 * 60.00355 * 10 9 7 32 32 H 1.08991 * 109.46747 * 300.00137 * 10 9 7 33 33 H 0.96997 * 120.00383 * 359.97438 * 11 10 9 34 34 H 0.96997 * 120.00709 * 354.95049 * 14 12 11 35 35 H 1.08994 * 109.47368 * 305.61446 * 17 15 14 36 36 H 1.09006 * 109.46793 * 185.61081 * 17 15 14 37 37 H 0.97003 * 120.00241 * 359.97438 * 19 18 17 38 38 H 0.97003 * 120.00316 * 179.72044 * 19 18 17 39 39 H 1.08002 * 119.99675 * 0.02562 * 22 21 15 40 40 H 1.07999 * 119.98386 * 180.25254 * 23 22 21 41 41 H 1.08002 * 119.99813 * 179.72302 * 24 23 22 42 42 H 1.08010 * 120.00870 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1866 -6.0981 -0.0007 13 8 3.4025 -6.0981 -0.0003 14 7 1.5127 -7.2652 -0.0008 15 6 2.2410 -8.5315 -0.1119 16 1 3.1189 -8.3916 -0.7427 17 6 1.3295 -9.5912 -0.7343 18 6 1.0079 -9.2053 -2.1550 19 7 0.2894 -10.0386 -2.9335 20 8 1.3955 -8.1449 -2.5981 21 6 2.6743 -8.9839 1.2587 22 6 1.9806 -8.5616 2.3774 23 6 2.3747 -8.9805 3.6342 24 6 3.4696 -9.8130 3.7743 25 6 4.1670 -10.2316 2.6571 26 6 3.7696 -9.8171 1.3982 27 17 4.6452 -10.3425 -0.0057 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8719 -3.6044 0.8894 32 1 2.8719 -3.6043 -0.8905 33 1 0.5428 -4.9308 -0.0011 34 1 0.5456 -7.2669 0.0728 35 1 0.4065 -9.6599 -0.1586 36 1 1.8358 -10.5564 -0.7257 37 1 -0.0204 -10.8869 -2.5793 38 1 0.0789 -9.7885 -3.8467 39 1 1.1278 -7.9077 2.2690 40 1 1.8299 -8.6536 4.5076 41 1 3.7798 -10.1365 4.7569 42 1 5.0221 -10.8823 2.7665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226132690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:05 Heat of formation + Delta-G solvation = -59.490867 kcal Electronic energy + Delta-G solvation = -26727.488080 eV Core-core repulsion = 22732.874646 eV Total energy + Delta-G solvation = -3994.613433 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.56538 -39.28902 -38.94478 -36.60591 -35.66783 -34.48244 -33.89080 -32.80354 -31.63375 -30.93525 -29.98632 -29.09490 -25.17551 -24.29067 -22.88354 -21.74628 -20.98156 -20.50451 -20.31600 -18.21493 -17.61147 -17.41683 -16.80251 -16.49435 -16.14544 -15.61557 -15.25977 -14.87300 -14.79079 -14.44830 -14.29157 -13.99488 -13.77981 -13.65504 -13.44495 -13.33021 -12.81683 -12.62718 -12.20558 -11.96965 -11.81082 -11.64975 -11.46426 -11.10457 -10.98881 -10.90998 -10.57017 -10.23977 -10.16414 -9.92053 -9.78843 -9.46678 -9.18956 -9.13603 -8.94241 -8.84594 -8.41342 -8.12766 -6.03045 -4.05017 0.93786 1.05882 1.96233 2.44383 3.07623 3.19225 3.34309 3.39989 3.43651 3.45280 3.77206 4.40584 4.43150 4.45142 4.61011 4.70660 4.79706 4.81757 4.97064 5.12992 5.17667 5.20983 5.34068 5.44057 5.61231 5.75884 5.99221 6.13606 6.22900 6.41403 6.51719 6.52572 6.57920 6.69702 6.88907 7.04199 7.15116 7.33509 7.65725 7.72650 7.97107 8.05725 8.34373 8.57208 9.00511 9.16743 9.59257 11.08753 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012534 B = 0.002763 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.419218 B =10130.520577 C =11295.826215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.142 3.858 11 N -0.738 5.738 12 C 0.707 3.293 13 O -0.591 6.591 14 N -0.737 5.737 15 C 0.220 3.780 16 H 0.113 0.887 17 C -0.148 4.148 18 C 0.511 3.489 19 N -0.860 5.860 20 O -0.516 6.516 21 C -0.082 4.082 22 C -0.089 4.089 23 C -0.114 4.114 24 C -0.111 4.111 25 C -0.111 4.111 26 C -0.026 4.026 27 Cl -0.068 7.068 28 H 0.261 0.739 29 H 0.022 0.978 30 H 0.021 0.979 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.391 0.609 34 H 0.391 0.609 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.399 0.601 38 H 0.402 0.598 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.173 -29.686 3.386 29.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.557 4.557 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.019 3.981 11 N -0.391 5.391 12 C 0.407 3.593 13 O -0.469 6.469 14 N -0.392 5.392 15 C 0.112 3.888 16 H 0.131 0.869 17 C -0.189 4.189 18 C 0.295 3.705 19 N -0.425 5.425 20 O -0.390 6.390 21 C -0.084 4.084 22 C -0.107 4.107 23 C -0.133 4.133 24 C -0.129 4.129 25 C -0.130 4.130 26 C -0.053 4.053 27 Cl -0.039 7.039 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.224 0.776 34 H 0.224 0.776 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.227 0.773 38 H 0.232 0.768 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.259 -28.804 3.115 28.973 hybrid contribution -0.728 0.514 -0.262 0.929 sum -0.469 -28.291 2.852 28.438 Atomic orbital electron populations 1.69959 1.06074 1.26747 1.50688 1.24991 0.94885 0.99357 0.95099 0.86517 0.79852 0.83037 0.78182 1.20586 1.21235 1.19716 1.21073 0.93286 0.90406 1.50946 0.92239 1.19317 0.94266 0.91101 0.97718 1.21550 0.95572 0.80447 1.00541 1.45463 1.09673 1.05264 1.78696 1.15922 0.85594 0.80293 0.77516 1.90891 1.11712 1.86448 1.57864 1.44899 1.09184 1.04179 1.80975 1.19240 0.95966 0.81903 0.91651 0.86940 1.21993 1.02223 1.00987 0.93669 1.20509 0.77806 0.84198 0.87988 1.43886 1.58317 1.23064 1.17220 1.90887 1.50853 1.22745 1.74477 1.20142 0.94803 0.96596 0.96902 1.20964 0.99899 0.98525 0.91304 1.21266 0.97080 0.97368 0.97542 1.21107 0.95563 0.97959 0.98268 1.21011 1.00540 1.00910 0.90534 1.20732 0.95227 1.00799 0.88558 1.98372 1.75567 1.89049 1.40930 0.92944 0.95989 0.96058 0.92923 0.92870 0.77607 0.77574 0.87885 0.87386 0.77307 0.76763 0.85111 0.85379 0.85221 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 8 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 9 C 0.01 0.35 5.09 -27.88 -0.14 0.21 16 10 C 0.14 3.25 5.61 -4.04 -0.02 3.23 16 11 N -0.74 -14.08 5.56 -65.23 -0.36 -14.45 16 12 C 0.71 13.39 8.53 -86.92 -0.74 12.64 16 13 O -0.59 -13.70 16.04 5.29 0.08 -13.61 16 14 N -0.74 -10.09 2.87 -59.81 -0.17 -10.26 16 15 C 0.22 2.71 1.24 -69.08 -0.09 2.62 16 16 H 0.11 1.80 6.45 -51.93 -0.34 1.47 16 17 C -0.15 -1.18 5.23 -27.88 -0.15 -1.33 16 18 C 0.51 5.13 7.99 -10.99 -0.09 5.05 16 19 N -0.86 -4.98 8.87 31.22 0.28 -4.70 16 20 O -0.52 -8.13 16.15 5.56 0.09 -8.04 16 21 C -0.08 -0.95 5.04 -104.59 -0.53 -1.48 16 22 C -0.09 -0.94 9.32 -39.59 -0.37 -1.31 16 23 C -0.11 -1.05 10.05 -39.58 -0.40 -1.45 16 24 C -0.11 -0.95 10.04 -39.59 -0.40 -1.35 16 25 C -0.11 -1.05 9.83 -39.55 -0.39 -1.44 16 26 C -0.03 -0.29 6.31 -39.50 -0.25 -0.54 16 27 Cl -0.07 -0.75 27.21 -51.86 -1.41 -2.16 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.39 6.46 8.49 -40.82 -0.35 6.11 16 34 H 0.39 4.17 8.64 -40.82 -0.35 3.82 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.11 0.68 7.95 -51.93 -0.41 0.26 16 37 H 0.40 0.93 8.83 -40.82 -0.36 0.57 16 38 H 0.40 2.25 8.93 -40.82 -0.36 1.89 16 39 H 0.13 1.28 7.26 -52.49 -0.38 0.90 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 41 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 377.17 15.07 5.68 5.68 Total: -1.00 -38.01 377.17 -9.54 -47.55 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.48 Total: 7.82 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -3.96 Total: 1.24 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.48 Total: -55.40 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: 0.17 Total: -21.65 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.41 Total: -2.16 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.01 -9.54 -47.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226132690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.943 kcal (2) G-P(sol) polarization free energy of solvation -38.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds