Wall clock time and date at job start Tue Mar 31 2020 22:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86792 * 120.00038 * 2 1 4 4 H 1.48499 * 109.47063 * 270.00061 * 3 2 1 5 5 H 1.48500 * 109.47380 * 30.00163 * 3 2 1 6 6 H 1.48502 * 109.47326 * 150.00380 * 3 2 1 7 7 C 1.37877 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99996 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00214 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46675 * 180.02562 * 10 9 7 12 12 C 1.34782 * 119.99982 * 180.02562 * 11 10 9 13 13 O 1.21590 * 119.99827 * 359.97438 * 12 11 10 14 14 N 1.34769 * 120.00034 * 179.97438 * 12 11 10 15 15 C 1.46505 * 119.99718 * 174.95482 * 14 12 11 16 16 H 1.08999 * 109.47343 * 326.44905 * 15 14 12 17 17 C 1.53009 * 109.46774 * 206.45294 * 15 14 12 18 18 C 1.50696 * 109.46761 * 65.61801 * 17 15 14 19 19 N 1.34778 * 119.99757 * 175.53845 * 18 17 15 20 20 O 1.21280 * 120.00667 * 355.53464 * 18 17 15 21 21 C 1.50695 * 109.47443 * 86.45472 * 15 14 12 22 22 C 1.38237 * 120.00418 * 24.72215 * 21 15 14 23 23 C 1.38226 * 120.01140 * 179.75118 * 22 21 15 24 24 C 1.38257 * 120.02619 * 0.54589 * 23 22 21 25 25 C 1.38190 * 120.01272 * 359.70997 * 24 23 22 26 26 C 1.38328 * 120.01046 * 205.00196 * 21 15 14 27 27 Cl 1.73601 * 120.01129 * 359.97438 * 26 21 15 28 28 H 0.96993 * 120.00234 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46810 * 60.00332 * 9 7 2 30 30 H 1.09000 * 109.46803 * 300.00376 * 9 7 2 31 31 H 1.08996 * 109.47252 * 60.00355 * 10 9 7 32 32 H 1.08991 * 109.46747 * 300.00137 * 10 9 7 33 33 H 0.96997 * 120.00383 * 359.97438 * 11 10 9 34 34 H 0.96997 * 120.00709 * 354.95049 * 14 12 11 35 35 H 1.08994 * 109.47368 * 305.61446 * 17 15 14 36 36 H 1.09006 * 109.46793 * 185.61081 * 17 15 14 37 37 H 0.97003 * 120.00241 * 359.97438 * 19 18 17 38 38 H 0.97003 * 120.00316 * 179.72044 * 19 18 17 39 39 H 1.08002 * 119.99675 * 0.02562 * 22 21 15 40 40 H 1.07999 * 119.98386 * 180.25254 * 23 22 21 41 41 H 1.08002 * 119.99813 * 179.72302 * 24 23 22 42 42 H 1.08010 * 120.00870 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1866 -6.0981 -0.0007 13 8 3.4025 -6.0981 -0.0003 14 7 1.5127 -7.2652 -0.0008 15 6 2.2410 -8.5315 -0.1119 16 1 3.1189 -8.3916 -0.7427 17 6 1.3295 -9.5912 -0.7343 18 6 1.0079 -9.2053 -2.1550 19 7 0.2894 -10.0386 -2.9335 20 8 1.3955 -8.1449 -2.5981 21 6 2.6743 -8.9839 1.2587 22 6 1.9806 -8.5616 2.3774 23 6 2.3747 -8.9805 3.6342 24 6 3.4696 -9.8130 3.7743 25 6 4.1670 -10.2316 2.6571 26 6 3.7696 -9.8171 1.3982 27 17 4.6452 -10.3425 -0.0057 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8719 -3.6044 0.8894 32 1 2.8719 -3.6043 -0.8905 33 1 0.5428 -4.9308 -0.0011 34 1 0.5456 -7.2669 0.0728 35 1 0.4065 -9.6599 -0.1586 36 1 1.8358 -10.5564 -0.7257 37 1 -0.0204 -10.8869 -2.5793 38 1 0.0789 -9.7885 -3.8467 39 1 1.1278 -7.9077 2.2690 40 1 1.8299 -8.6536 4.5076 41 1 3.7798 -10.1365 4.7569 42 1 5.0221 -10.8823 2.7665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226132690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:05 Heat of formation + Delta-G solvation = -88.395845 kcal Electronic energy + Delta-G solvation = -26728.741493 eV Core-core repulsion = 22732.874646 eV Total energy + Delta-G solvation = -3995.866847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.59884 -40.28828 -40.02563 -37.41807 -36.94322 -36.15289 -34.81410 -34.63476 -32.88739 -31.67989 -31.13667 -30.52515 -26.82638 -25.53982 -23.72639 -23.04718 -22.43729 -21.78452 -21.30024 -19.54133 -18.51381 -18.43722 -18.12248 -17.62461 -17.32579 -16.61962 -16.50392 -16.30926 -16.06661 -15.95187 -15.29567 -15.06452 -14.97898 -14.74609 -14.69114 -14.40035 -14.26384 -13.96883 -13.46536 -13.19972 -12.94512 -12.73714 -12.58622 -12.51455 -12.42931 -12.26766 -12.20072 -11.73844 -11.65786 -11.49213 -11.17237 -11.06785 -10.61260 -10.59890 -10.33511 -9.88294 -9.71256 -9.61458 -8.23588 -6.33852 0.17821 0.31614 1.16423 1.41375 1.42568 1.53902 1.66729 1.76835 2.25799 2.41764 2.53439 2.72184 3.10883 3.37144 3.60753 3.68635 3.89726 4.08836 4.15756 4.31141 4.43061 4.45033 4.50265 4.52365 4.56554 4.69873 4.79964 4.86476 4.98406 5.23486 5.32526 5.35410 5.49573 5.53896 5.59889 5.61174 5.79570 5.87997 5.93543 6.05773 6.18104 6.50656 6.78721 7.16914 7.35236 7.41225 7.67328 8.88511 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012534 B = 0.002763 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.419218 B =10130.520577 C =11295.826215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.027 3.973 10 C 0.163 3.837 11 N -0.733 5.733 12 C 0.706 3.294 13 O -0.636 6.636 14 N -0.715 5.715 15 C 0.218 3.782 16 H 0.073 0.927 17 C -0.137 4.137 18 C 0.509 3.491 19 N -0.837 5.837 20 O -0.582 6.582 21 C -0.096 4.096 22 C -0.102 4.102 23 C -0.117 4.117 24 C -0.107 4.107 25 C -0.115 4.115 26 C -0.043 4.043 27 Cl -0.076 7.076 28 H 0.266 0.734 29 H 0.005 0.995 30 H 0.012 0.988 31 H 0.044 0.956 32 H 0.034 0.966 33 H 0.405 0.595 34 H 0.408 0.592 35 H 0.140 0.860 36 H 0.130 0.870 37 H 0.419 0.581 38 H 0.405 0.595 39 H 0.135 0.865 40 H 0.150 0.850 41 H 0.160 0.840 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.821 -31.092 4.732 31.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.075 0.925 9 C -0.011 4.011 10 C 0.039 3.961 11 N -0.388 5.388 12 C 0.405 3.595 13 O -0.518 6.518 14 N -0.370 5.370 15 C 0.112 3.888 16 H 0.091 0.909 17 C -0.177 4.177 18 C 0.294 3.706 19 N -0.401 5.401 20 O -0.461 6.461 21 C -0.099 4.099 22 C -0.121 4.121 23 C -0.135 4.135 24 C -0.125 4.125 25 C -0.134 4.134 26 C -0.070 4.070 27 Cl -0.047 7.047 28 H 0.075 0.925 29 H 0.023 0.977 30 H 0.030 0.970 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.240 0.760 34 H 0.244 0.756 35 H 0.158 0.842 36 H 0.148 0.852 37 H 0.251 0.749 38 H 0.236 0.764 39 H 0.153 0.847 40 H 0.168 0.832 41 H 0.177 0.823 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.472 -30.324 4.459 30.654 hybrid contribution -0.563 0.827 -0.666 1.202 sum -1.035 -29.498 3.793 29.759 Atomic orbital electron populations 1.70058 1.07500 1.27998 1.50998 1.25868 0.95830 1.03053 0.94354 0.85434 0.78658 0.78397 0.78500 1.19878 1.20226 1.19068 1.21459 0.93542 0.91963 1.51600 0.92488 1.19103 0.94136 0.91570 0.96271 1.21019 0.94615 0.81323 0.99176 1.45154 1.10179 1.04406 1.79042 1.16053 0.85094 0.81185 0.77118 1.90855 1.13864 1.87197 1.59867 1.44676 1.09956 1.03213 1.79146 1.19273 0.95471 0.81952 0.92126 0.90908 1.21989 1.03167 1.00101 0.92469 1.20857 0.77313 0.83586 0.88860 1.43703 1.56377 1.23109 1.16953 1.90872 1.53775 1.25684 1.75805 1.20079 0.95685 0.97577 0.96536 1.21123 1.00314 0.98903 0.91717 1.21589 0.97278 0.96921 0.97664 1.21489 0.94780 0.96958 0.99271 1.21309 1.01064 1.00902 0.90105 1.20920 0.95398 1.01592 0.89056 1.98364 1.75738 1.89102 1.41519 0.92509 0.97662 0.96985 0.93805 0.94724 0.76017 0.75605 0.84241 0.85248 0.74931 0.76375 0.84731 0.83197 0.82283 0.83293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.47 13.29 21.45 0.28 -55.19 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 7 C -0.55 -31.89 9.11 25.60 0.23 -31.66 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.42 5.09 29.85 0.15 1.57 16 10 C 0.16 7.73 5.61 86.38 0.48 8.21 16 11 N -0.73 -28.64 5.56 -478.55 -2.66 -31.30 16 12 C 0.71 27.39 8.53 179.06 1.53 28.91 16 13 O -0.64 -30.64 16.04 -4.00 -0.06 -30.70 16 14 N -0.71 -19.55 2.87 -461.40 -1.32 -20.88 16 15 C 0.22 5.36 1.24 44.25 0.05 5.41 16 16 H 0.07 2.43 6.45 -2.39 -0.02 2.42 16 17 C -0.14 -1.97 5.23 29.85 0.16 -1.81 16 18 C 0.51 9.80 7.99 87.66 0.70 10.50 16 19 N -0.84 -8.20 8.87 -173.53 -1.54 -9.74 16 20 O -0.58 -18.80 16.15 -3.03 -0.05 -18.85 16 21 C -0.10 -2.17 5.04 -19.84 -0.10 -2.27 16 22 C -0.10 -2.02 9.32 22.27 0.21 -1.81 16 23 C -0.12 -1.86 10.05 22.27 0.22 -1.64 16 24 C -0.11 -1.55 10.04 22.26 0.22 -1.32 16 25 C -0.12 -1.98 9.83 22.29 0.22 -1.76 16 26 C -0.04 -0.92 6.31 22.32 0.14 -0.78 16 27 Cl -0.08 -1.68 27.21 -2.72 -0.07 -1.75 16 28 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 29 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.40 13.48 8.49 -92.71 -0.79 12.69 16 34 H 0.41 8.33 8.64 -92.71 -0.80 7.53 16 35 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.13 1.35 7.95 -2.38 -0.02 1.33 16 37 H 0.42 0.78 8.83 -92.71 -0.82 -0.04 16 38 H 0.41 3.99 8.93 -92.71 -0.83 3.16 16 39 H 0.13 2.44 7.26 -2.91 -0.02 2.42 16 40 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 41 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 42 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -85.33 377.17 -0.85 -86.17 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -2.13 Total: 22.84 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 4.68 Total: 12.47 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -5.24 Total: -117.11 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -0.11 Total: -49.55 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.07 Total: -1.75 kcal Total: -85.33 -0.85 -86.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226132690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.223 kcal (2) G-P(sol) polarization free energy of solvation -85.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds