Wall clock time and date at job start Tue Mar 31 2020 22:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00112 * 2 1 4 4 H 1.48508 * 109.47012 * 270.00120 * 3 2 1 5 5 H 1.48491 * 109.47340 * 30.00026 * 3 2 1 6 6 H 1.48499 * 109.47078 * 150.00408 * 3 2 1 7 7 C 1.37875 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00505 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47554 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47321 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00065 * 179.97438 * 12 11 10 14 14 O 1.21593 * 119.99923 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00128 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99828 * 180.27942 * 15 13 12 17 17 H 1.09004 * 109.47372 * 34.71852 * 16 15 13 18 18 C 1.50701 * 109.46815 * 274.72090 * 16 15 13 19 19 N 1.34781 * 119.99914 * 180.02562 * 18 16 15 20 20 O 1.21272 * 120.00277 * 0.02562 * 18 16 15 21 21 C 1.50701 * 109.47114 * 154.72036 * 16 15 13 22 22 C 1.38245 * 119.98181 * 39.72751 * 21 16 15 23 23 C 1.38221 * 120.00688 * 179.72707 * 22 21 16 24 24 C 1.38354 * 119.98826 * 0.54322 * 23 22 21 25 25 Cl 1.73597 * 120.01414 * 179.75037 * 24 23 22 26 26 C 1.38348 * 119.97264 * 359.72429 * 24 23 22 27 27 C 1.38213 * 119.98823 * 0.02562 * 26 24 23 28 28 H 0.97010 * 119.99934 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46940 * 59.99282 * 9 7 2 30 30 H 1.08998 * 109.46562 * 300.00246 * 9 7 2 31 31 H 1.09000 * 109.47686 * 59.99613 * 10 9 7 32 32 H 1.09007 * 109.47129 * 299.99403 * 10 9 7 33 33 H 1.09000 * 109.47211 * 59.99132 * 11 10 9 34 34 H 1.09006 * 109.46815 * 299.99368 * 11 10 9 35 35 H 0.97000 * 120.00386 * 359.97438 * 12 11 10 36 36 H 0.97001 * 119.99727 * 359.97438 * 15 13 12 37 37 H 0.97007 * 119.99770 * 0.02562 * 19 18 16 38 38 H 0.96999 * 120.00186 * 179.97438 * 19 18 16 39 39 H 1.07989 * 119.99780 * 359.97438 * 22 21 16 40 40 H 1.07997 * 120.00162 * 180.27165 * 23 22 21 41 41 H 1.08000 * 120.00918 * 179.97438 * 26 24 23 42 42 H 1.08001 * 119.99845 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4801 -4.9871 -0.0033 12 7 2.4321 -6.1006 -0.0037 13 6 1.9828 -7.3713 -0.0047 14 8 0.7873 -7.5935 -0.0058 15 7 2.8586 -8.3958 -0.0045 16 6 2.3702 -9.7769 -0.0118 17 1 1.4553 -9.8357 -0.6015 18 6 2.0861 -10.2167 1.4013 19 7 1.6246 -11.4603 1.6402 20 8 2.2727 -9.4517 2.3236 21 6 3.4167 -10.6766 -0.6172 22 6 4.7532 -10.4740 -0.3276 23 6 5.7131 -11.3024 -0.8780 24 6 5.3369 -12.3274 -1.7278 25 17 6.5424 -13.3641 -2.4246 26 6 3.9997 -12.5261 -2.0216 27 6 3.0403 -11.7004 -1.4665 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5562 -0.8919 30 1 0.6240 -2.5574 0.8880 31 1 2.8712 -3.6048 0.8890 32 1 2.8724 -3.6040 -0.8910 33 1 0.8543 -5.0441 -0.8939 34 1 0.8525 -5.0455 0.8861 35 1 3.3857 -5.9235 -0.0032 36 1 3.8122 -8.2185 -0.0040 37 1 1.4757 -12.0724 0.9025 38 1 1.4421 -11.7435 2.5498 39 1 5.0470 -9.6710 0.3319 40 1 6.7568 -11.1468 -0.6482 41 1 3.7055 -13.3258 -2.6852 42 1 1.9963 -11.8556 -1.6954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263065106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:59 Heat of formation + Delta-G solvation = -61.375980 kcal Electronic energy + Delta-G solvation = -25727.048750 eV Core-core repulsion = 21732.353572 eV Total energy + Delta-G solvation = -3994.695178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.02840 -39.53694 -39.00039 -37.07344 -35.61036 -34.79556 -34.00322 -33.28333 -31.84190 -31.63848 -30.76092 -27.61909 -26.22690 -23.66965 -23.02670 -22.74434 -21.13568 -20.62993 -20.25065 -18.58492 -18.00134 -17.70938 -17.10422 -16.48071 -16.13490 -15.99187 -15.39880 -15.29439 -14.89660 -14.54868 -14.39060 -14.32002 -14.13816 -14.01411 -13.86603 -13.69451 -13.10488 -12.26517 -12.20348 -12.11384 -11.92879 -11.77166 -11.70755 -11.38337 -10.88831 -10.69308 -10.60381 -10.56982 -10.17789 -9.97476 -9.82468 -9.69054 -9.45795 -9.38880 -9.13685 -9.09346 -8.62543 -8.34483 -5.99123 -4.02003 0.39883 0.64320 1.56104 2.32343 2.54249 2.85989 3.27219 3.32640 3.38954 3.41971 3.50977 3.94910 4.11901 4.24839 4.34016 4.47431 4.59800 4.64606 4.69171 4.95574 5.02289 5.28982 5.36594 5.49527 5.59557 5.71549 5.76841 5.85582 6.08737 6.13686 6.23521 6.48076 6.54650 6.66433 6.77964 6.98644 7.02446 7.05544 7.67033 7.80175 7.96689 7.99992 8.09409 8.40965 8.70905 9.04638 9.61889 11.12142 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016858 B = 0.001867 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.549684 B =14990.812843 C =16080.560672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.736 5.736 13 C 0.710 3.290 14 O -0.590 6.590 15 N -0.729 5.729 16 C 0.191 3.809 17 H 0.127 0.873 18 C 0.510 3.490 19 N -0.853 5.853 20 O -0.520 6.520 21 C -0.090 4.090 22 C -0.092 4.092 23 C -0.103 4.103 24 C -0.030 4.030 25 Cl -0.067 7.067 26 C -0.105 4.105 27 C -0.092 4.092 28 H 0.261 0.739 29 H 0.019 0.981 30 H 0.020 0.980 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.394 0.606 36 H 0.399 0.601 37 H 0.399 0.601 38 H 0.403 0.597 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.003 -32.644 -3.739 34.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.390 5.390 13 C 0.410 3.590 14 O -0.468 6.468 15 N -0.385 5.385 16 C 0.081 3.919 17 H 0.144 0.856 18 C 0.292 3.708 19 N -0.417 5.417 20 O -0.394 6.394 21 C -0.091 4.091 22 C -0.111 4.111 23 C -0.122 4.122 24 C -0.056 4.056 25 Cl -0.038 7.038 26 C -0.123 4.123 27 C -0.111 4.111 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.228 0.772 36 H 0.234 0.766 37 H 0.227 0.773 38 H 0.234 0.766 39 H 0.153 0.847 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 10.002 -32.101 -3.320 33.786 hybrid contribution 1.299 0.560 -0.019 1.414 sum 11.300 -31.541 -3.340 33.670 Atomic orbital electron populations 1.69970 1.06039 1.26636 1.50605 1.25034 0.94869 0.99294 0.95340 0.86578 0.79799 0.83458 0.78052 1.20688 1.21230 1.19914 1.21204 0.92986 0.90943 1.50836 0.92656 1.19029 0.93870 0.90794 0.97713 1.21894 0.99803 0.93278 1.00867 1.21540 0.91260 0.84022 1.01956 1.45306 1.10557 1.04202 1.78933 1.15866 0.85059 0.80752 0.77369 1.90913 1.14007 1.84009 1.57850 1.44720 1.09310 1.03207 1.81294 1.19355 0.97798 0.81263 0.93515 0.85569 1.20948 0.76429 0.81824 0.91610 1.43774 1.70154 1.15034 1.12777 1.90787 1.50875 1.52445 1.45282 1.19730 0.93949 0.96877 0.98582 1.20976 0.91789 0.99170 0.99159 1.21080 1.00761 0.93945 0.96379 1.21043 0.90406 0.95094 0.99093 1.98395 1.55907 1.66234 1.83237 1.21067 0.90621 1.00301 1.00335 1.20999 1.00221 0.94129 0.95737 0.92958 0.96235 0.96204 0.92700 0.92755 0.91871 0.91852 0.77239 0.76565 0.77264 0.76596 0.84721 0.84381 0.84303 0.84196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 11 C 0.14 2.48 5.67 -4.04 -0.02 2.46 16 12 N -0.74 -11.13 5.56 -65.22 -0.36 -11.49 16 13 C 0.71 11.18 8.41 -86.92 -0.73 10.45 16 14 O -0.59 -11.62 16.00 5.28 0.08 -11.53 16 15 N -0.73 -8.17 4.56 -60.96 -0.28 -8.45 16 16 C 0.19 1.78 2.59 -70.23 -0.18 1.60 16 17 H 0.13 1.19 7.43 -51.93 -0.39 0.81 16 18 C 0.51 5.57 7.44 -10.98 -0.08 5.49 16 19 N -0.85 -5.54 8.77 31.22 0.27 -5.27 16 20 O -0.52 -8.26 17.17 5.56 0.10 -8.16 16 21 C -0.09 -0.58 4.74 -104.62 -0.50 -1.08 16 22 C -0.09 -0.57 9.05 -39.58 -0.36 -0.93 16 23 C -0.10 -0.60 9.83 -39.54 -0.39 -0.99 16 24 C -0.03 -0.18 6.32 -39.50 -0.25 -0.43 16 25 Cl -0.07 -0.41 28.96 -51.86 -1.50 -1.91 16 26 C -0.10 -0.51 9.83 -39.55 -0.39 -0.90 16 27 C -0.09 -0.43 9.51 -39.59 -0.38 -0.81 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.39 4.75 8.49 -40.82 -0.35 4.41 16 36 H 0.40 3.42 6.87 -40.82 -0.28 3.14 16 37 H 0.40 1.34 8.55 -40.82 -0.35 0.99 16 38 H 0.40 2.33 8.93 -40.82 -0.36 1.96 16 39 H 0.14 0.76 6.90 -52.49 -0.36 0.39 16 40 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 41 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 42 H 0.14 0.34 8.04 -52.49 -0.42 -0.08 16 LS Contribution 379.59 15.07 5.72 5.72 Total: -1.00 -37.57 379.59 -9.65 -47.22 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -5.43 Total: 4.22 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -3.97 Total: -0.71 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.37 Total: -51.50 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: 0.18 Total: -19.70 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.50 Total: -1.91 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.57 -9.65 -47.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263065106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.155 kcal (2) G-P(sol) polarization free energy of solvation -37.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds