Wall clock time and date at job start Tue Mar 31 2020 22:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00112 * 2 1 4 4 H 1.48508 * 109.47012 * 270.00120 * 3 2 1 5 5 H 1.48491 * 109.47340 * 30.00026 * 3 2 1 6 6 H 1.48499 * 109.47078 * 150.00408 * 3 2 1 7 7 C 1.37875 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00505 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47554 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47321 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00065 * 179.97438 * 12 11 10 14 14 O 1.21593 * 119.99923 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00128 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99828 * 180.27942 * 15 13 12 17 17 H 1.09004 * 109.47372 * 34.71852 * 16 15 13 18 18 C 1.50701 * 109.46815 * 274.72090 * 16 15 13 19 19 N 1.34781 * 119.99914 * 180.02562 * 18 16 15 20 20 O 1.21272 * 120.00277 * 0.02562 * 18 16 15 21 21 C 1.50701 * 109.47114 * 154.72036 * 16 15 13 22 22 C 1.38245 * 119.98181 * 39.72751 * 21 16 15 23 23 C 1.38221 * 120.00688 * 179.72707 * 22 21 16 24 24 C 1.38354 * 119.98826 * 0.54322 * 23 22 21 25 25 Cl 1.73597 * 120.01414 * 179.75037 * 24 23 22 26 26 C 1.38348 * 119.97264 * 359.72429 * 24 23 22 27 27 C 1.38213 * 119.98823 * 0.02562 * 26 24 23 28 28 H 0.97010 * 119.99934 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46940 * 59.99282 * 9 7 2 30 30 H 1.08998 * 109.46562 * 300.00246 * 9 7 2 31 31 H 1.09000 * 109.47686 * 59.99613 * 10 9 7 32 32 H 1.09007 * 109.47129 * 299.99403 * 10 9 7 33 33 H 1.09000 * 109.47211 * 59.99132 * 11 10 9 34 34 H 1.09006 * 109.46815 * 299.99368 * 11 10 9 35 35 H 0.97000 * 120.00386 * 359.97438 * 12 11 10 36 36 H 0.97001 * 119.99727 * 359.97438 * 15 13 12 37 37 H 0.97007 * 119.99770 * 0.02562 * 19 18 16 38 38 H 0.96999 * 120.00186 * 179.97438 * 19 18 16 39 39 H 1.07989 * 119.99780 * 359.97438 * 22 21 16 40 40 H 1.07997 * 120.00162 * 180.27165 * 23 22 21 41 41 H 1.08000 * 120.00918 * 179.97438 * 26 24 23 42 42 H 1.08001 * 119.99845 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4801 -4.9871 -0.0033 12 7 2.4321 -6.1006 -0.0037 13 6 1.9828 -7.3713 -0.0047 14 8 0.7873 -7.5935 -0.0058 15 7 2.8586 -8.3958 -0.0045 16 6 2.3702 -9.7769 -0.0118 17 1 1.4553 -9.8357 -0.6015 18 6 2.0861 -10.2167 1.4013 19 7 1.6246 -11.4603 1.6402 20 8 2.2727 -9.4517 2.3236 21 6 3.4167 -10.6766 -0.6172 22 6 4.7532 -10.4740 -0.3276 23 6 5.7131 -11.3024 -0.8780 24 6 5.3369 -12.3274 -1.7278 25 17 6.5424 -13.3641 -2.4246 26 6 3.9997 -12.5261 -2.0216 27 6 3.0403 -11.7004 -1.4665 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5562 -0.8919 30 1 0.6240 -2.5574 0.8880 31 1 2.8712 -3.6048 0.8890 32 1 2.8724 -3.6040 -0.8910 33 1 0.8543 -5.0441 -0.8939 34 1 0.8525 -5.0455 0.8861 35 1 3.3857 -5.9235 -0.0032 36 1 3.8122 -8.2185 -0.0040 37 1 1.4757 -12.0724 0.9025 38 1 1.4421 -11.7435 2.5498 39 1 5.0470 -9.6710 0.3319 40 1 6.7568 -11.1468 -0.6482 41 1 3.7055 -13.3258 -2.6852 42 1 1.9963 -11.8556 -1.6954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263065106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:58 Heat of formation + Delta-G solvation = -90.098790 kcal Electronic energy + Delta-G solvation = -25728.294264 eV Core-core repulsion = 21732.353572 eV Total energy + Delta-G solvation = -3995.940692 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.85971 -40.44759 -39.82409 -37.57114 -37.04648 -35.85154 -35.19350 -34.78103 -33.15013 -32.18457 -31.84215 -28.84821 -27.62718 -24.95289 -24.01428 -23.31324 -22.31438 -22.14389 -21.25816 -19.62282 -18.80549 -18.55058 -18.33482 -17.77013 -17.11945 -16.70282 -16.65408 -16.50444 -16.12682 -15.59444 -15.52310 -15.37903 -15.27045 -14.81477 -14.49259 -14.43153 -14.25319 -13.84644 -13.72641 -13.49740 -12.74450 -12.70599 -12.57605 -12.53915 -12.44686 -12.35723 -11.80668 -11.69043 -11.66815 -11.54630 -11.33965 -11.16033 -10.71265 -10.54139 -10.46614 -10.08297 -9.90835 -9.66515 -8.18217 -6.29578 -0.06730 0.24969 1.12470 1.41968 1.43874 1.46092 1.54638 1.56836 2.04437 2.42747 2.44696 2.71428 3.15350 3.26914 3.34509 3.69661 3.88197 3.97975 4.08891 4.17333 4.24557 4.27484 4.44228 4.57248 4.60778 4.92385 4.96962 4.97969 5.05399 5.16384 5.18059 5.21637 5.38009 5.46307 5.54507 5.68357 5.72562 5.84228 5.85432 5.88650 6.23892 6.36425 6.87352 7.00314 7.26335 7.39656 7.50430 8.93879 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016858 B = 0.001867 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.549684 B =14990.812843 C =16080.560672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.100 4.100 11 C 0.150 3.850 12 N -0.728 5.728 13 C 0.706 3.294 14 O -0.633 6.633 15 N -0.713 5.713 16 C 0.193 3.807 17 H 0.128 0.872 18 C 0.505 3.495 19 N -0.830 5.830 20 O -0.578 6.578 21 C -0.095 4.095 22 C -0.098 4.098 23 C -0.108 4.108 24 C -0.037 4.037 25 Cl -0.071 7.071 26 C -0.104 4.104 27 C -0.083 4.083 28 H 0.263 0.737 29 H -0.005 1.005 30 H -0.009 1.009 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.042 0.958 35 H 0.412 0.588 36 H 0.413 0.587 37 H 0.417 0.583 38 H 0.409 0.591 39 H 0.137 0.863 40 H 0.147 0.853 41 H 0.158 0.842 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.868 -33.879 -4.583 36.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.026 3.974 12 N -0.383 5.383 13 C 0.406 3.594 14 O -0.514 6.514 15 N -0.370 5.370 16 C 0.083 3.917 17 H 0.145 0.855 18 C 0.288 3.712 19 N -0.395 5.395 20 O -0.457 6.457 21 C -0.097 4.097 22 C -0.117 4.117 23 C -0.127 4.127 24 C -0.064 4.064 25 Cl -0.042 7.042 26 C -0.122 4.122 27 C -0.102 4.102 28 H 0.072 0.928 29 H 0.013 0.987 30 H 0.009 0.991 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.248 0.752 36 H 0.251 0.749 37 H 0.248 0.752 38 H 0.241 0.759 39 H 0.154 0.846 40 H 0.165 0.835 41 H 0.176 0.824 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 11.928 -33.427 -4.189 35.737 hybrid contribution 0.702 0.807 0.227 1.093 sum 12.630 -32.620 -3.962 35.203 Atomic orbital electron populations 1.70118 1.07921 1.27752 1.51686 1.26040 0.95785 1.03588 0.94840 0.85399 0.78626 0.78237 0.78474 1.19708 1.21089 1.18515 1.21674 0.93747 0.91977 1.50409 0.91529 1.18944 0.94457 0.92917 0.95135 1.21592 0.98465 0.91657 1.02128 1.21095 0.91299 0.84521 1.00503 1.44974 1.10925 1.03480 1.78918 1.16032 0.84955 0.81370 0.77062 1.90880 1.16069 1.84689 1.59755 1.44574 1.09488 1.03202 1.79714 1.19464 0.98879 0.80496 0.92889 0.85472 1.21250 0.75936 0.82402 0.91610 1.43593 1.68005 1.13914 1.13939 1.90763 1.53754 1.54269 1.46889 1.19533 0.93169 0.97270 0.99681 1.21037 0.91854 0.99456 0.99333 1.21186 1.01219 0.93894 0.96393 1.21232 0.90890 0.95100 0.99174 1.98396 1.56198 1.66321 1.83277 1.21305 0.90077 1.00598 1.00224 1.21242 1.01582 0.92944 0.94419 0.92840 0.98694 0.99097 0.91651 0.91041 0.92925 0.93957 0.75215 0.74945 0.75158 0.75901 0.84551 0.83493 0.82434 0.81652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.69 13.29 21.45 0.28 -57.41 16 2 C 0.00 -0.29 5.46 84.65 0.46 0.17 16 3 Si 0.97 44.28 29.54 68.60 2.03 46.30 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 7 C -0.54 -30.52 9.11 25.60 0.23 -30.29 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.23 4.97 29.84 0.15 1.38 16 10 C -0.10 -3.98 5.27 30.59 0.16 -3.82 16 11 C 0.15 5.60 5.67 86.38 0.49 6.09 16 12 N -0.73 -21.60 5.56 -478.52 -2.66 -24.26 16 13 C 0.71 22.12 8.41 179.05 1.51 23.62 16 14 O -0.63 -25.29 16.00 -4.01 -0.06 -25.35 16 15 N -0.71 -15.41 4.56 -465.03 -2.12 -17.52 16 16 C 0.19 3.37 2.59 43.50 0.11 3.48 16 17 H 0.13 2.24 7.43 -2.39 -0.02 2.22 16 18 C 0.51 10.70 7.44 87.66 0.65 11.36 16 19 N -0.83 -9.57 8.77 -173.53 -1.52 -11.09 16 20 O -0.58 -18.54 17.17 -3.01 -0.05 -18.59 16 21 C -0.10 -1.04 4.74 -19.86 -0.09 -1.14 16 22 C -0.10 -1.06 9.05 22.27 0.20 -0.86 16 23 C -0.11 -1.07 9.83 22.29 0.22 -0.85 16 24 C -0.04 -0.37 6.32 22.32 0.14 -0.23 16 25 Cl -0.07 -0.76 28.96 -2.72 -0.08 -0.84 16 26 C -0.10 -0.72 9.83 22.29 0.22 -0.50 16 27 C -0.08 -0.55 9.51 22.26 0.21 -0.34 16 28 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 29 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H -0.01 -0.55 8.14 -2.39 -0.02 -0.56 16 31 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 33 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.41 9.28 8.49 -92.71 -0.79 8.49 16 36 H 0.41 6.55 6.87 -92.71 -0.64 5.91 16 37 H 0.42 1.81 8.55 -92.70 -0.79 1.01 16 38 H 0.41 4.19 8.93 -92.71 -0.83 3.36 16 39 H 0.14 1.36 6.90 -2.92 -0.02 1.34 16 40 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 41 H 0.16 0.50 8.06 -2.91 -0.02 0.48 16 42 H 0.17 0.20 8.04 -2.91 -0.02 0.18 16 Total: -1.00 -83.24 379.59 -1.46 -84.71 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -1.94 Total: 15.97 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 4.66 Total: 8.08 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -6.02 Total: -110.28 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -0.12 Total: -43.94 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.08 Total: -0.84 kcal Total: -83.24 -1.46 -84.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263065106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.392 kcal (2) G-P(sol) polarization free energy of solvation -83.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds