Wall clock time and date at job start Tue Mar 31 2020 22:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 120.00251 * 2 1 4 4 H 1.48500 * 109.47235 * 269.99912 * 3 2 1 5 5 H 1.48500 * 109.46846 * 29.99738 * 3 2 1 6 6 H 1.48499 * 109.47281 * 149.99591 * 3 2 1 7 7 C 1.38811 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00920 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99774 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00155 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46955 * 180.02562 * 10 9 7 12 12 O 1.42901 * 109.45801 * 299.96876 * 11 10 9 13 13 C 1.53041 * 109.45714 * 180.02562 * 11 10 9 14 14 C 1.53192 * 109.31036 * 178.60958 * 13 11 10 15 15 N 1.46932 * 108.77501 * 54.63684 * 14 13 11 16 16 C 1.34771 * 120.62942 * 126.36675 * 15 14 13 17 17 O 1.21528 * 120.00324 * 3.95068 * 16 15 14 18 18 C 1.48078 * 119.99880 * 183.95960 * 16 15 14 19 19 C 1.39870 * 120.93039 * 306.90843 * 18 16 15 20 20 C 1.38078 * 119.02101 * 179.97438 * 19 18 16 21 21 N 1.31841 * 120.93973 * 0.02738 * 20 19 18 22 22 C 1.31761 * 122.07410 * 359.94785 * 21 20 19 23 23 C 1.38355 * 120.86729 * 0.05009 * 22 21 20 24 24 Cl 1.73602 * 120.51694 * 179.97438 * 23 22 21 25 25 C 1.46919 * 118.73454 * 306.64021 * 15 14 13 26 26 C 1.52768 * 109.01104 * 53.31092 * 25 15 14 27 27 H 0.97005 * 119.99970 * 0.02562 * 1 2 3 28 28 H 0.97003 * 119.99959 * 359.97438 * 9 7 2 29 29 H 1.08999 * 109.46875 * 59.99959 * 10 9 7 30 30 H 1.08995 * 109.47006 * 300.00103 * 10 9 7 31 31 H 0.96700 * 114.00296 * 60.03218 * 12 11 10 32 32 H 1.08998 * 109.49990 * 58.66015 * 13 11 10 33 33 H 1.09002 * 109.49919 * 298.56142 * 13 11 10 34 34 H 1.08990 * 109.59004 * 294.84758 * 14 13 11 35 35 H 1.09007 * 109.58264 * 174.41506 * 14 13 11 36 36 H 1.08000 * 120.48745 * 359.70285 * 19 18 16 37 37 H 1.07997 * 119.52912 * 179.97438 * 20 19 18 38 38 H 1.08001 * 119.56746 * 180.02562 * 22 21 20 39 39 H 1.09000 * 109.58295 * 173.14424 * 25 15 14 40 40 H 1.09004 * 109.58960 * 293.56792 * 25 15 14 41 41 H 1.08994 * 109.56190 * 185.55000 * 26 25 15 42 42 H 1.09000 * 109.35785 * 65.49960 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0638 -4.8197 0.0008 12 8 0.2415 -4.7439 1.1671 13 6 1.8293 -6.1449 0.0026 14 6 0.8311 -7.3065 0.0368 15 7 -0.1097 -7.1546 -1.0816 16 6 -0.3060 -8.1617 -1.9553 17 8 0.2426 -9.2322 -1.7821 18 6 -1.1901 -7.9639 -3.1267 19 6 -2.4973 -7.4917 -2.9692 20 6 -3.2873 -7.3213 -4.0887 21 7 -2.8258 -7.5972 -5.2925 22 6 -1.6014 -8.0435 -5.4871 23 6 -0.7412 -8.2435 -4.4221 24 17 0.8699 -8.8325 -4.6888 25 6 -0.8278 -5.8818 -1.2326 26 6 0.1848 -4.7380 -1.2493 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3881 0.0005 29 1 2.6840 -3.7141 0.8922 30 1 2.6854 -3.7149 -0.8878 31 1 -0.2739 -3.9283 1.2326 32 1 2.4727 -6.1922 0.8812 33 1 2.4380 -6.2147 -0.8989 34 1 0.2839 -7.2905 0.9793 35 1 1.3662 -8.2511 -0.0617 36 1 -2.8843 -7.2680 -1.9861 37 1 -4.2980 -6.9576 -3.9766 38 1 -1.2650 -8.2562 -6.4910 39 1 -1.3870 -5.8865 -2.1682 40 1 -1.5131 -5.7472 -0.3956 41 1 -0.3423 -3.7841 -1.2618 42 1 0.8090 -4.8210 -2.1390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274558106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:11 Heat of formation + Delta-G solvation = -32.197666 kcal Electronic energy + Delta-G solvation = -27605.244693 eV Core-core repulsion = 23611.814782 eV Total energy + Delta-G solvation = -3993.429911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.19896 -39.87903 -38.48628 -36.93471 -35.67564 -34.08119 -33.39609 -31.88972 -31.53238 -31.08912 -30.42316 -27.04943 -25.25988 -24.18003 -23.65130 -23.29797 -21.95529 -20.61636 -19.54174 -18.02535 -17.59586 -17.19013 -16.83719 -16.45917 -15.80401 -15.41500 -15.23440 -15.02079 -14.59826 -14.50227 -14.35104 -14.16702 -13.76406 -13.52519 -13.32204 -12.97142 -12.74625 -12.47473 -12.41497 -12.31899 -11.96771 -11.67421 -11.49447 -11.18937 -11.14034 -11.07585 -10.88856 -10.57215 -10.39191 -10.22840 -10.13684 -9.81207 -9.72795 -9.50757 -9.35378 -8.99899 -8.72258 -7.06910 -5.89202 -3.18261 0.32529 0.47487 1.65720 2.34295 2.71325 3.21609 3.37109 3.43129 3.44153 3.93936 3.96532 4.24529 4.36568 4.45650 4.49690 4.69122 4.71970 4.89950 5.01628 5.07266 5.10214 5.19211 5.30217 5.38837 5.43467 5.46197 5.53990 5.70148 5.78838 5.88560 5.94930 5.95818 6.02767 6.22765 6.29119 6.43758 6.60359 6.63204 7.15233 7.34793 7.60415 7.84376 7.99849 8.29767 9.40723 9.93559 10.27779 11.33570 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014455 B = 0.003022 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.524065 B = 9262.814895 C = 9889.172264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.729 5.729 10 C 0.128 3.872 11 C 0.130 3.870 12 O -0.560 6.560 13 C -0.118 4.118 14 C 0.120 3.880 15 N -0.593 5.593 16 C 0.558 3.442 17 O -0.520 6.520 18 C -0.068 4.068 19 C -0.133 4.133 20 C 0.103 3.897 21 N -0.458 5.458 22 C 0.115 3.885 23 C -0.053 4.053 24 Cl -0.031 7.031 25 C 0.102 3.898 26 C -0.157 4.157 27 H 0.256 0.744 28 H 0.380 0.620 29 H 0.029 0.971 30 H 0.026 0.974 31 H 0.383 0.617 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.152 0.848 37 H 0.171 0.829 38 H 0.172 0.828 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.392 -17.372 -6.980 19.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.001 3.999 11 C 0.089 3.911 12 O -0.368 6.368 13 C -0.156 4.156 14 C -0.002 4.002 15 N -0.326 5.326 16 C 0.344 3.656 17 O -0.396 6.396 18 C -0.080 4.080 19 C -0.154 4.154 20 C -0.054 4.054 21 N -0.167 5.167 22 C -0.043 4.043 23 C -0.083 4.083 24 Cl -0.002 7.002 25 C -0.020 4.020 26 C -0.196 4.196 27 H 0.066 0.934 28 H 0.214 0.786 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.233 0.767 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.170 0.830 37 H 0.188 0.812 38 H 0.189 0.811 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.112 0.888 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.089 -18.332 -7.473 20.441 hybrid contribution 0.614 1.605 0.533 1.799 sum -4.475 -16.727 -6.940 18.655 Atomic orbital electron populations 1.69621 1.05099 1.25879 1.57649 1.24715 0.95553 0.97719 1.02663 0.86177 0.78718 0.83655 0.77558 1.21667 1.21684 1.20725 1.19200 0.91105 0.83960 1.43000 0.91138 1.42272 1.05478 0.99999 1.89737 1.21312 0.93887 0.85983 0.98755 1.21278 0.90448 0.94858 0.84485 1.86368 1.61471 1.45184 1.43757 1.21867 0.97530 0.92762 1.03449 1.21608 0.90841 0.99265 0.88461 1.48042 1.43025 1.13977 1.27513 1.18010 0.81321 0.84437 0.81856 1.90816 1.49019 1.25058 1.74663 1.20308 0.95646 0.98826 0.93233 1.22445 0.92632 0.98272 1.02025 1.22905 1.00382 0.95161 0.86903 1.67713 1.13699 1.09728 1.25553 1.22847 0.88244 0.94718 0.98527 1.22167 0.89947 1.01909 0.94317 1.98425 1.19288 1.86080 1.96429 1.21945 0.95045 0.82385 1.02628 1.22474 0.98801 0.98891 0.99433 0.93398 0.78572 0.95271 0.95664 0.76749 0.89660 0.90380 0.90122 0.89125 0.82999 0.81150 0.81138 0.89872 0.90046 0.88799 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.56 13.06 55.49 0.72 -25.84 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.69 29.55 -169.99 -5.02 16.66 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.24 -6.45 9.99 -15.06 -0.15 -6.60 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -16.86 5.07 -59.91 -0.30 -17.16 16 10 C 0.13 2.42 5.40 -4.04 -0.02 2.40 16 11 C 0.13 1.94 0.71 -90.58 -0.06 1.88 16 12 O -0.56 -8.58 11.70 -35.23 -0.41 -9.00 16 13 C -0.12 -1.52 5.11 -26.61 -0.14 -1.66 16 14 C 0.12 1.48 6.19 -3.71 -0.02 1.46 16 15 N -0.59 -7.27 2.98 -174.05 -0.52 -7.79 16 16 C 0.56 7.38 6.74 -12.23 -0.08 7.30 16 17 O -0.52 -8.27 15.66 5.34 0.08 -8.19 16 18 C -0.07 -0.77 4.93 -104.62 -0.52 -1.29 16 19 C -0.13 -1.16 7.53 -39.03 -0.29 -1.45 16 20 C 0.10 0.83 11.17 -17.61 -0.20 0.64 16 21 N -0.46 -4.51 10.33 -13.28 -0.14 -4.65 16 22 C 0.11 1.10 10.99 -17.54 -0.19 0.90 16 23 C -0.05 -0.59 6.37 -38.91 -0.25 -0.84 16 24 Cl -0.03 -0.36 27.54 -51.86 -1.43 -1.79 16 25 C 0.10 1.16 5.29 -3.93 -0.02 1.14 16 26 C -0.16 -2.18 4.91 -26.83 -0.13 -2.31 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.38 8.86 5.58 -40.82 -0.23 8.64 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.38 5.90 7.85 45.56 0.36 6.26 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.00 7.81 -51.93 -0.41 0.59 16 35 H 0.09 1.14 7.03 -51.93 -0.36 0.78 16 36 H 0.15 1.02 7.38 -52.49 -0.39 0.63 16 37 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.17 1.21 8.06 -52.49 -0.42 0.78 16 39 H 0.08 0.84 4.71 -51.93 -0.24 0.59 16 40 H 0.08 0.87 7.81 -51.93 -0.41 0.46 16 41 H 0.09 1.46 6.83 -51.93 -0.35 1.10 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 355.98 15.07 5.36 5.36 Total: -1.00 -31.59 355.98 -8.36 -39.95 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -4.54 Total: 11.26 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -2.17 Total: 1.18 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.23 Total: -55.44 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.33 Total: -17.18 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.43 Total: -1.79 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.59 -8.36 -39.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274558106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.751 kcal (2) G-P(sol) polarization free energy of solvation -31.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds