Wall clock time and date at job start Tue Mar 31 2020 22:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 120.00251 * 2 1 4 4 H 1.48500 * 109.47235 * 269.99912 * 3 2 1 5 5 H 1.48500 * 109.46846 * 29.99738 * 3 2 1 6 6 H 1.48499 * 109.47281 * 149.99591 * 3 2 1 7 7 C 1.38811 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00920 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99774 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00155 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46955 * 180.02562 * 10 9 7 12 12 O 1.42901 * 109.45801 * 299.96876 * 11 10 9 13 13 C 1.53041 * 109.45714 * 180.02562 * 11 10 9 14 14 C 1.53192 * 109.31036 * 178.60958 * 13 11 10 15 15 N 1.46932 * 108.77501 * 54.63684 * 14 13 11 16 16 C 1.34771 * 120.62942 * 126.36675 * 15 14 13 17 17 O 1.21528 * 120.00324 * 3.95068 * 16 15 14 18 18 C 1.48078 * 119.99880 * 183.95960 * 16 15 14 19 19 C 1.39870 * 120.93039 * 306.90843 * 18 16 15 20 20 C 1.38078 * 119.02101 * 179.97438 * 19 18 16 21 21 N 1.31841 * 120.93973 * 0.02738 * 20 19 18 22 22 C 1.31761 * 122.07410 * 359.94785 * 21 20 19 23 23 C 1.38355 * 120.86729 * 0.05009 * 22 21 20 24 24 Cl 1.73602 * 120.51694 * 179.97438 * 23 22 21 25 25 C 1.46919 * 118.73454 * 306.64021 * 15 14 13 26 26 C 1.52768 * 109.01104 * 53.31092 * 25 15 14 27 27 H 0.97005 * 119.99970 * 0.02562 * 1 2 3 28 28 H 0.97003 * 119.99959 * 359.97438 * 9 7 2 29 29 H 1.08999 * 109.46875 * 59.99959 * 10 9 7 30 30 H 1.08995 * 109.47006 * 300.00103 * 10 9 7 31 31 H 0.96700 * 114.00296 * 60.03218 * 12 11 10 32 32 H 1.08998 * 109.49990 * 58.66015 * 13 11 10 33 33 H 1.09002 * 109.49919 * 298.56142 * 13 11 10 34 34 H 1.08990 * 109.59004 * 294.84758 * 14 13 11 35 35 H 1.09007 * 109.58264 * 174.41506 * 14 13 11 36 36 H 1.08000 * 120.48745 * 359.70285 * 19 18 16 37 37 H 1.07997 * 119.52912 * 179.97438 * 20 19 18 38 38 H 1.08001 * 119.56746 * 180.02562 * 22 21 20 39 39 H 1.09000 * 109.58295 * 173.14424 * 25 15 14 40 40 H 1.09004 * 109.58960 * 293.56792 * 25 15 14 41 41 H 1.08994 * 109.56190 * 185.55000 * 26 25 15 42 42 H 1.09000 * 109.35785 * 65.49960 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0638 -4.8197 0.0008 12 8 0.2415 -4.7439 1.1671 13 6 1.8293 -6.1449 0.0026 14 6 0.8311 -7.3065 0.0368 15 7 -0.1097 -7.1546 -1.0816 16 6 -0.3060 -8.1617 -1.9553 17 8 0.2426 -9.2322 -1.7821 18 6 -1.1901 -7.9639 -3.1267 19 6 -2.4973 -7.4917 -2.9692 20 6 -3.2873 -7.3213 -4.0887 21 7 -2.8258 -7.5972 -5.2925 22 6 -1.6014 -8.0435 -5.4871 23 6 -0.7412 -8.2435 -4.4221 24 17 0.8699 -8.8325 -4.6888 25 6 -0.8278 -5.8818 -1.2326 26 6 0.1848 -4.7380 -1.2493 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3881 0.0005 29 1 2.6840 -3.7141 0.8922 30 1 2.6854 -3.7149 -0.8878 31 1 -0.2739 -3.9283 1.2326 32 1 2.4727 -6.1922 0.8812 33 1 2.4380 -6.2147 -0.8989 34 1 0.2839 -7.2905 0.9793 35 1 1.3662 -8.2511 -0.0617 36 1 -2.8843 -7.2680 -1.9861 37 1 -4.2980 -6.9576 -3.9766 38 1 -1.2650 -8.2562 -6.4910 39 1 -1.3870 -5.8865 -2.1682 40 1 -1.5131 -5.7472 -0.3956 41 1 -0.3423 -3.7841 -1.2618 42 1 0.8090 -4.8210 -2.1390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274558106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:11 Heat of formation + Delta-G solvation = -54.293531 kcal Electronic energy + Delta-G solvation = -27606.202841 eV Core-core repulsion = 23611.814782 eV Total energy + Delta-G solvation = -3994.388060 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.08061 -40.82507 -39.63174 -37.76340 -36.90489 -35.78913 -34.26133 -33.38780 -32.33257 -32.10972 -31.89893 -28.45885 -26.43293 -25.18968 -24.93252 -24.27865 -23.28313 -21.75507 -20.57705 -19.47118 -18.94150 -18.03503 -17.67165 -17.44461 -17.05231 -16.74066 -16.28960 -16.15686 -15.86009 -15.74494 -15.24876 -15.16229 -14.96979 -14.81768 -14.58050 -14.39159 -14.19063 -13.59541 -13.30171 -13.17500 -13.16128 -13.00065 -12.80938 -12.76120 -12.33583 -12.32972 -12.25014 -12.11441 -11.98846 -11.52044 -11.36252 -11.00334 -10.97522 -10.79069 -10.54879 -10.09796 -9.78067 -9.02376 -7.97330 -5.25163 -0.46122 -0.21335 0.85743 1.36616 1.48364 1.48897 1.56924 1.77360 2.49753 2.54584 3.05744 3.23493 3.34728 3.40281 3.53825 3.60297 3.66378 3.70025 3.86256 3.96410 4.05034 4.21317 4.26755 4.34038 4.43902 4.50957 4.54534 4.67318 4.72628 4.74456 4.78856 4.86072 4.95073 5.05039 5.10428 5.28831 5.32179 5.40235 5.49368 6.16181 6.24826 6.66203 6.73676 6.84707 7.33446 8.03354 8.29408 9.25150 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014455 B = 0.003022 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.524065 B = 9262.814895 C = 9889.172264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.063 4.063 3 Si 0.966 3.034 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.274 1.274 7 C -0.249 4.249 8 H 0.069 0.931 9 N -0.734 5.734 10 C 0.128 3.872 11 C 0.140 3.860 12 O -0.559 6.559 13 C -0.113 4.113 14 C 0.124 3.876 15 N -0.591 5.591 16 C 0.558 3.442 17 O -0.552 6.552 18 C -0.087 4.087 19 C -0.128 4.128 20 C 0.110 3.890 21 N -0.472 5.472 22 C 0.116 3.884 23 C -0.068 4.068 24 Cl -0.045 7.045 25 C 0.110 3.890 26 C -0.151 4.151 27 H 0.253 0.747 28 H 0.378 0.622 29 H 0.021 0.979 30 H 0.023 0.977 31 H 0.383 0.617 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.175 0.825 37 H 0.206 0.794 38 H 0.190 0.810 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.356 -17.529 -7.207 19.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.256 4.256 3 Si 0.796 3.204 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.381 4.381 8 H 0.087 0.913 9 N -0.379 5.379 10 C 0.001 3.999 11 C 0.099 3.901 12 O -0.367 6.367 13 C -0.151 4.151 14 C 0.002 3.998 15 N -0.323 5.323 16 C 0.346 3.654 17 O -0.430 6.430 18 C -0.099 4.099 19 C -0.148 4.148 20 C -0.046 4.046 21 N -0.181 5.181 22 C -0.042 4.042 23 C -0.098 4.098 24 Cl -0.017 7.017 25 C -0.012 4.012 26 C -0.189 4.189 27 H 0.062 0.938 28 H 0.212 0.788 29 H 0.039 0.961 30 H 0.041 0.959 31 H 0.232 0.768 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.192 0.808 37 H 0.222 0.778 38 H 0.206 0.794 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.034 -18.504 -7.703 20.932 hybrid contribution 0.911 1.634 0.608 1.967 sum -5.123 -16.870 -7.095 19.005 Atomic orbital electron populations 1.69741 1.06163 1.26167 1.58992 1.25402 0.96378 1.00534 1.03333 0.85253 0.77767 0.80037 0.77352 1.21536 1.22017 1.19960 1.19523 0.91350 0.85385 1.41852 0.91303 1.42350 1.05530 1.00564 1.89481 1.21437 0.94601 0.85883 0.98004 1.21186 0.89868 0.94091 0.85002 1.86373 1.61322 1.45042 1.43930 1.21838 0.97594 0.91786 1.03901 1.21546 0.90761 0.98703 0.88739 1.48074 1.42859 1.14069 1.27253 1.18290 0.81078 0.83961 0.82111 1.90794 1.50460 1.26326 1.75448 1.20322 0.96583 1.00459 0.92496 1.22714 0.91423 0.97241 1.03411 1.23497 1.01530 0.93572 0.86041 1.67803 1.13670 1.10123 1.26524 1.23130 0.88000 0.94047 0.98994 1.22303 0.89717 1.02974 0.94828 1.98414 1.20374 1.86386 1.96479 1.21958 0.94282 0.80799 1.04148 1.22353 0.98949 0.99259 0.98380 0.93839 0.78838 0.96097 0.95876 0.76811 0.89009 0.90238 0.89725 0.89294 0.80776 0.77754 0.79361 0.88198 0.88703 0.90395 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.67 13.06 21.65 0.28 -54.39 16 2 C -0.06 -3.44 5.50 84.86 0.47 -2.98 16 3 Si 0.97 44.39 29.55 68.60 2.03 46.41 16 4 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.25 -13.26 9.99 84.03 0.84 -12.42 16 8 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 9 N -0.73 -33.95 5.07 -343.45 -1.74 -35.69 16 10 C 0.13 4.79 5.40 86.38 0.47 5.25 16 11 C 0.14 4.04 0.71 -10.77 -0.01 4.03 16 12 O -0.56 -16.48 11.70 -148.98 -1.74 -18.23 16 13 C -0.11 -2.80 5.11 30.67 0.16 -2.64 16 14 C 0.12 2.91 6.19 86.36 0.53 3.45 16 15 N -0.59 -13.61 2.98 -822.87 -2.45 -16.06 16 16 C 0.56 14.17 6.74 86.86 0.59 14.76 16 17 O -0.55 -17.37 15.66 -3.81 -0.06 -17.43 16 18 C -0.09 -1.83 4.93 -19.86 -0.10 -1.93 16 19 C -0.13 -1.87 7.53 22.63 0.17 -1.70 16 20 C 0.11 1.44 11.17 84.65 0.95 2.39 16 21 N -0.47 -8.20 10.33 -195.92 -2.02 -10.22 16 22 C 0.12 2.04 10.99 84.73 0.93 2.97 16 23 C -0.07 -1.44 6.37 22.71 0.14 -1.30 16 24 Cl -0.05 -1.05 27.54 -2.72 -0.07 -1.12 16 25 C 0.11 2.27 5.29 86.22 0.46 2.72 16 26 C -0.15 -4.03 4.91 30.53 0.15 -3.88 16 27 H 0.25 14.04 8.31 -92.70 -0.77 13.27 16 28 H 0.38 17.68 5.58 -92.71 -0.52 17.16 16 29 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.38 11.50 7.85 -74.06 -0.58 10.92 16 32 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.08 1.94 7.81 -2.39 -0.02 1.93 16 35 H 0.09 2.16 7.03 -2.38 -0.02 2.15 16 36 H 0.17 1.71 7.38 -2.91 -0.02 1.69 16 37 H 0.21 1.18 8.06 -2.91 -0.02 1.15 16 38 H 0.19 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.10 1.76 4.71 -2.39 -0.01 1.75 16 40 H 0.09 1.77 7.81 -2.39 -0.02 1.75 16 41 H 0.08 2.37 6.83 -2.39 -0.02 2.36 16 42 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -66.91 355.98 -0.06 -66.97 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: -0.02 Total: 31.05 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 5.74 Total: 8.71 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -5.93 Total: -116.36 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -1.80 Total: -35.66 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.07 Total: -1.12 kcal Total: -66.91 -0.06 -66.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274558106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.677 kcal (2) G-P(sol) polarization free energy of solvation -66.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds