Wall clock time and date at job start Tue Mar 31 2020 22:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86802 * 120.00287 * 2 1 4 4 H 1.48502 * 109.47290 * 240.00314 * 3 2 1 5 5 H 1.48507 * 109.46992 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47040 * 120.00189 * 3 2 1 7 7 C 1.38652 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99960 * 179.97438 * 7 2 1 9 9 O 1.34829 * 119.99972 * 359.97438 * 7 2 1 10 10 C 1.35758 * 116.99546 * 185.05458 * 9 7 2 11 11 C 1.38872 * 120.07263 * 354.46806 * 10 9 7 12 12 C 1.38100 * 119.93431 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.06459 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.92872 * 179.97438 * 13 12 11 15 15 N 1.46501 * 109.46927 * 90.00431 * 14 13 12 16 16 C 1.34779 * 119.99733 * 180.02562 * 15 14 13 17 17 O 1.21625 * 120.00101 * 359.97438 * 16 15 14 18 18 C 1.47316 * 119.99696 * 179.97438 * 16 15 14 19 19 C 1.39005 * 120.90689 * 359.97438 * 18 16 15 20 20 C 1.39719 * 119.29038 * 179.74398 * 19 18 16 21 21 C 1.35263 * 121.07730 * 0.28330 * 20 19 18 22 22 N 1.35707 * 121.57609 * 359.94506 * 21 20 19 23 23 N 1.40206 * 134.09021 * 180.02562 * 22 21 20 24 24 N 1.29018 * 106.96392 * 180.02562 * 23 22 21 25 25 N 1.28589 * 110.78381 * 359.97438 * 24 23 22 26 26 C 1.32044 * 110.21617 * 0.02562 * 25 24 23 27 27 C 1.38298 * 120.14013 * 0.25551 * 13 12 11 28 28 C 1.38101 * 120.06839 * 359.45287 * 27 13 12 29 29 H 0.97004 * 119.99401 * 359.97438 * 1 2 3 30 30 H 1.08006 * 120.03404 * 359.97438 * 11 10 9 31 31 H 1.08000 * 119.97074 * 180.02562 * 12 11 10 32 32 H 1.08997 * 109.47111 * 330.00374 * 14 13 12 33 33 H 1.09001 * 109.46852 * 210.00486 * 14 13 12 34 34 H 0.97001 * 120.00157 * 359.97438 * 15 14 13 35 35 H 1.07991 * 120.35436 * 0.02562 * 19 18 16 36 36 H 1.07993 * 119.45918 * 180.24772 * 20 19 18 37 37 H 1.08006 * 119.20745 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.96746 * 179.69909 * 27 13 12 39 39 H 1.07995 * 120.03729 * 180.27540 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7465 0.0006 6 1 3.1034 1.6963 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1055 11 6 3.4571 -3.4395 0.0920 12 6 4.2024 -4.5972 0.1996 13 6 3.5686 -5.8206 0.3200 14 6 4.3849 -7.0820 0.4366 15 7 4.6565 -7.3591 1.8493 16 6 5.3759 -8.4445 2.1969 17 8 5.7993 -9.1941 1.3378 18 6 5.6495 -8.7228 3.6174 19 6 5.1752 -7.8785 4.6146 20 6 5.4500 -8.1776 5.9514 21 6 6.1732 -9.2700 6.2881 22 7 6.6592 -10.1182 5.3468 23 7 7.4184 -11.2960 5.3937 24 7 7.5907 -11.6816 4.1746 25 7 7.0194 -10.8721 3.3549 26 6 6.4314 -9.8923 4.0166 27 6 2.1874 -5.8893 0.3279 28 6 1.4366 -4.7346 0.2268 29 1 -0.4849 0.8401 0.0004 30 1 3.9526 -2.4846 -0.0032 31 1 5.2812 -4.5472 0.1896 32 1 5.3272 -6.9556 -0.0965 33 1 3.8309 -7.9146 0.0029 34 1 4.3191 -6.7610 2.5344 35 1 4.5967 -7.0031 4.3590 36 1 5.0795 -7.5257 6.7286 37 1 6.3680 -9.4722 7.3310 38 1 1.6954 -6.8465 0.4172 39 1 0.3580 -4.7885 0.2375 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001292735319.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:29 Heat of formation + Delta-G solvation = 121.992893 kcal Electronic energy + Delta-G solvation = -26807.840161 eV Core-core repulsion = 22719.988960 eV Total energy + Delta-G solvation = -4087.851201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.72829 -40.13699 -39.21262 -38.68867 -36.95759 -34.73999 -34.29482 -32.48346 -32.40903 -31.29714 -30.36690 -29.78432 -26.44002 -25.64611 -24.82751 -24.68605 -23.39038 -22.14228 -21.13138 -20.76716 -19.18946 -18.17961 -18.02309 -18.00859 -17.25945 -17.07138 -16.31154 -15.80485 -15.42060 -14.84586 -14.67751 -14.54818 -14.23284 -14.11915 -13.79850 -13.61449 -13.51733 -13.25700 -12.91037 -12.86190 -12.86086 -12.77175 -12.24782 -11.82301 -11.69932 -11.48228 -11.31923 -11.04171 -10.88747 -10.78988 -10.71497 -10.56588 -10.21849 -9.51437 -9.26263 -9.02710 -8.98047 -8.37794 -7.42320 -6.59989 -4.19105 -0.51803 0.02932 1.18203 1.75553 1.94229 2.04214 2.10487 2.89439 3.03945 3.04196 3.05327 3.07990 3.11047 3.54071 3.82698 3.84163 3.99356 4.28898 4.43805 4.57876 4.80893 4.93337 4.94918 5.00887 5.08625 5.11309 5.16328 5.32795 5.35712 5.57207 5.71336 5.80174 5.83059 6.03889 6.26036 6.27368 6.51068 6.71455 6.86691 7.04791 7.17829 7.27048 7.32875 7.62628 7.84262 7.98238 8.00999 8.85078 9.52324 10.57145 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021190 B = 0.001993 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.070197 B =14046.730939 C =14656.009545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.395 4.395 8 H 0.093 0.907 9 O -0.171 6.171 10 C 0.161 3.839 11 C -0.237 4.237 12 C -0.049 4.049 13 C -0.219 4.219 14 C 0.181 3.819 15 N -0.713 5.713 16 C 0.555 3.445 17 O -0.505 6.505 18 C -0.096 4.096 19 C -0.019 4.019 20 C -0.142 4.142 21 C 0.126 3.874 22 N -0.310 5.310 23 N -0.108 5.108 24 N -0.009 5.009 25 N -0.290 5.290 26 C 0.272 3.728 27 C -0.053 4.053 28 C -0.196 4.196 29 H 0.273 0.727 30 H 0.128 0.872 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.400 0.600 35 H 0.166 0.834 36 H 0.177 0.823 37 H 0.185 0.815 38 H 0.113 0.887 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.472 -11.345 13.718 19.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.074 6.074 10 C 0.106 3.894 11 C -0.257 4.257 12 C -0.068 4.068 13 C -0.220 4.220 14 C 0.059 3.941 15 N -0.365 5.365 16 C 0.339 3.661 17 O -0.380 6.380 18 C -0.105 4.105 19 C -0.044 4.044 20 C -0.165 4.165 21 C -0.001 4.001 22 N -0.090 5.090 23 N -0.091 5.091 24 N -0.002 5.002 25 N -0.146 5.146 26 C 0.014 3.986 27 C -0.072 4.072 28 C -0.215 4.215 29 H 0.082 0.918 30 H 0.146 0.854 31 H 0.127 0.873 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.235 0.765 35 H 0.184 0.816 36 H 0.194 0.806 37 H 0.202 0.798 38 H 0.131 0.869 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.233 -13.088 12.859 20.540 hybrid contribution -0.161 1.967 0.759 2.115 sum 9.073 -11.121 13.618 19.785 Atomic orbital electron populations 1.70026 1.06018 1.28073 1.45049 1.25328 0.95872 0.98971 0.96268 0.85761 0.78739 0.79566 0.79288 1.19382 1.20185 1.19420 1.21312 0.91850 0.80691 1.53193 0.88920 1.83981 1.34532 1.11588 1.77269 1.19455 0.90333 0.88059 0.91567 1.21159 0.93759 0.98989 1.11773 1.20654 0.98421 0.91588 0.96149 1.19168 0.93530 0.93454 1.15872 1.20059 0.98916 0.95193 0.79919 1.46221 1.54232 1.25925 1.10166 1.17460 0.79912 0.82206 0.86528 1.90925 1.50011 1.46839 1.50195 1.20412 1.01359 0.92773 0.95972 1.22106 0.93411 0.97304 0.91623 1.21063 1.00274 0.97276 0.97911 1.21814 0.94369 0.88712 0.95168 1.49018 1.33835 1.18615 1.07524 1.82820 1.15017 0.95117 1.16117 1.78064 1.10478 1.17495 0.94178 1.75308 1.14096 1.01938 1.23289 1.23632 0.97354 0.96620 0.81024 1.20542 0.92727 0.96855 0.97068 1.20224 0.99712 0.90229 1.11332 0.91755 0.85400 0.87315 0.91065 0.91018 0.76473 0.81636 0.80600 0.79813 0.86878 0.86352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.78 13.67 55.48 0.76 -23.02 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 19.20 29.55 -169.99 -5.02 14.18 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.39 -10.25 9.49 30.89 0.29 -9.96 16 8 H 0.09 2.20 5.20 -52.48 -0.27 1.93 16 9 O -0.17 -4.53 9.76 0.03 0.00 -4.53 16 10 C 0.16 3.49 6.65 -39.11 -0.26 3.23 16 11 C -0.24 -4.54 9.17 -39.40 -0.36 -4.90 16 12 C -0.05 -0.76 9.69 -39.61 -0.38 -1.15 16 13 C -0.22 -3.09 5.25 -104.57 -0.55 -3.64 16 14 C 0.18 2.20 5.80 -5.19 -0.03 2.17 16 15 N -0.71 -7.31 5.50 -62.60 -0.34 -7.65 16 16 C 0.55 6.73 7.77 -12.57 -0.10 6.64 16 17 O -0.50 -8.36 16.28 5.26 0.09 -8.28 16 18 C -0.10 -0.92 6.06 -102.71 -0.62 -1.54 16 19 C -0.02 -0.09 9.63 -38.74 -0.37 -0.46 16 20 C -0.14 -0.35 9.92 -40.09 -0.40 -0.75 16 21 C 0.13 0.56 11.15 -16.90 -0.19 0.37 16 22 N -0.31 -3.02 3.94 -10.99 -0.04 -3.06 16 23 N -0.11 -1.33 13.99 60.35 0.84 -0.49 16 24 N -0.01 -0.13 13.36 60.35 0.81 0.67 16 25 N -0.29 -4.49 11.75 32.20 0.38 -4.11 16 26 C 0.27 3.33 7.85 -154.52 -1.21 2.12 16 27 C -0.05 -0.80 9.69 -39.61 -0.38 -1.18 16 28 C -0.20 -3.63 9.99 -39.39 -0.39 -4.02 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.13 2.48 5.64 -52.48 -0.30 2.18 16 31 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 33 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.40 3.08 6.57 -40.82 -0.27 2.81 16 35 H 0.17 0.33 6.49 -52.49 -0.34 -0.01 16 36 H 0.18 -0.25 8.06 -52.49 -0.42 -0.67 16 37 H 0.18 0.14 8.06 -52.48 -0.42 -0.28 16 38 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -35.25 351.39 -5.57 -40.82 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -3.27 Total: 2.28 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -5.06 Total: -12.10 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 2.40 Total: -37.67 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.25 -5.57 -40.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292735319.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.809 kcal (2) G-P(sol) polarization free energy of solvation -35.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds