Wall clock time and date at job start Tue Mar 31 2020 22:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30475 * 126.17967 * 2 1 4 4 N 1.28668 * 109.51575 * 180.02562 * 3 2 1 5 5 C 1.31300 * 109.22869 * 359.97438 * 4 3 2 6 6 C 1.47641 * 126.38612 * 179.97438 * 5 4 3 7 7 C 1.39418 * 120.22616 * 173.61485 * 6 5 4 8 8 C 1.37996 * 119.99601 * 179.97438 * 7 6 5 9 9 C 1.38544 * 120.45235 * 359.97438 * 8 7 6 10 10 C 1.37969 * 120.45130 * 0.02562 * 9 8 7 11 11 C 1.39472 * 119.98705 * 359.97438 * 10 9 8 12 12 C 1.47602 * 120.21931 * 179.97438 * 11 10 9 13 13 O 1.21609 * 119.99750 * 126.48774 * 12 11 10 14 14 N 1.34776 * 120.00012 * 306.48812 * 12 11 10 15 15 C 1.40512 * 119.99914 * 179.97438 * 14 12 11 16 16 C 1.40676 * 126.08443 * 0.02562 * 15 14 12 17 17 N 1.30899 * 108.38322 * 179.97438 * 16 15 14 18 18 N 1.40069 * 108.41831 * 0.02562 * 17 16 15 19 19 C 1.37313 * 126.06963 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99858 * 179.97438 * 19 18 17 21 21 C 1.38988 * 119.99747 * 359.97162 * 19 18 17 22 22 N 1.31290 * 120.00035 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00022 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46658 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47083 * 119.99745 * 23 21 19 26 26 H 1.48493 * 109.47475 * 240.00329 * 23 21 19 27 27 C 1.35702 * 126.08523 * 179.71772 * 15 14 12 28 28 O 1.34336 * 126.17704 * 180.34529 * 2 1 3 29 29 H 1.09010 * 109.46732 * 89.97948 * 1 2 3 30 30 H 1.08999 * 109.47569 * 209.97504 * 1 2 3 31 31 H 1.08996 * 109.47324 * 329.98507 * 1 2 3 32 32 H 1.07999 * 120.00156 * 359.70729 * 7 6 5 33 33 H 1.07999 * 119.76980 * 179.97438 * 8 7 6 34 34 H 1.08002 * 119.76966 * 180.02562 * 9 8 7 35 35 H 1.07996 * 120.00461 * 180.02562 * 10 9 8 36 36 H 0.97002 * 120.00337 * 0.02562 * 14 12 11 37 37 H 1.07997 * 125.80509 * 0.02562 * 16 15 14 38 38 H 0.97004 * 119.99739 * 179.97438 * 22 21 19 39 39 H 1.07994 * 126.24938 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2772 1.0532 0.0000 4 7 3.5099 0.6842 -0.0005 5 6 3.5686 -0.6275 -0.0004 6 6 4.7952 -1.4493 -0.0014 7 6 4.7120 -2.8345 0.1330 8 6 5.8615 -3.5980 0.1309 9 6 7.1029 -2.9979 -0.0046 10 6 7.2067 -1.6287 -0.1387 11 6 6.0570 -0.8391 -0.1391 12 6 6.1622 0.6262 -0.2817 13 8 5.5287 1.1999 -1.1468 14 7 6.9603 1.3284 0.5469 15 6 7.0608 2.7233 0.4108 16 6 6.3893 3.5135 -0.5398 17 7 6.7339 4.7628 -0.3556 18 7 7.6356 4.8199 0.7148 19 6 8.2265 5.9543 1.2144 20 1 8.9103 5.8848 2.0475 21 6 7.9446 7.1918 0.6480 22 7 7.1130 7.2762 -0.3644 23 14 8.7490 8.7349 1.3272 24 1 9.6385 8.3719 2.4596 25 1 9.5488 9.3872 0.2595 26 1 7.6996 9.6721 1.8023 27 6 7.8184 3.5485 1.1766 28 8 2.3000 -1.0843 -0.0065 29 1 -0.3633 0.0004 -1.0278 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3634 0.8898 0.5140 32 1 3.7484 -3.3095 0.2429 33 1 5.7929 -4.6707 0.2356 34 1 7.9953 -3.6062 -0.0052 35 1 8.1780 -1.1685 -0.2443 36 1 7.4659 0.8707 1.2367 37 1 5.7052 3.1512 -1.2928 38 1 6.9160 8.1400 -0.7594 39 1 8.4519 3.2531 1.9998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319187291.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:30 Heat of formation + Delta-G solvation = 136.932694 kcal Electronic energy + Delta-G solvation = -28105.517287 eV Core-core repulsion = 24018.313925 eV Total energy + Delta-G solvation = -4087.203362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.03504 -40.17238 -39.28930 -37.83135 -36.05093 -34.14131 -33.45878 -33.05169 -31.51359 -31.42310 -30.06913 -28.03753 -27.52558 -25.16175 -24.36892 -23.56552 -22.55574 -21.81861 -20.89401 -20.26341 -19.26599 -18.06891 -17.43405 -17.35106 -16.86648 -16.33715 -15.58849 -15.38017 -15.07585 -15.04828 -14.51194 -14.25730 -14.03832 -13.88124 -13.58565 -13.34718 -13.10624 -13.03694 -12.81904 -12.76097 -12.22652 -12.11663 -11.74864 -11.59301 -11.50353 -11.28272 -11.19568 -10.83092 -10.73501 -10.44577 -10.28716 -9.95842 -9.35213 -9.04633 -9.01998 -8.66390 -8.64675 -7.91369 -6.55282 -6.45354 -4.10982 0.26345 0.87034 1.56671 2.13538 2.59964 2.95202 3.10881 3.11667 3.16893 3.44368 3.64219 3.73032 3.84861 3.95017 4.28044 4.50279 4.56817 4.65560 4.74886 4.81828 4.99831 5.05515 5.11034 5.12490 5.15557 5.25105 5.30417 5.44976 5.56219 5.60698 5.71570 5.99270 6.03047 6.06806 6.36353 6.44613 6.60739 7.01789 7.10648 7.26511 7.37651 7.97702 8.31092 8.41724 8.43797 8.75902 8.99429 9.50700 9.81325 10.50720 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014082 B = 0.003050 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.890827 B = 9179.160947 C =10830.131907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.152 3.848 3 N -0.277 5.277 4 N -0.212 5.212 5 C 0.180 3.820 6 C 0.018 3.982 7 C -0.091 4.091 8 C -0.109 4.109 9 C -0.100 4.100 10 C -0.093 4.093 11 C -0.066 4.066 12 C 0.538 3.462 13 O -0.494 6.494 14 N -0.615 5.615 15 C -0.053 4.053 16 C -0.024 4.024 17 N -0.261 5.261 18 N -0.145 5.145 19 C -0.323 4.323 20 H 0.115 0.885 21 C 0.046 3.954 22 N -0.770 5.770 23 Si 0.933 3.067 24 H -0.264 1.264 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.085 4.085 28 O -0.227 6.227 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.395 0.605 37 H 0.176 0.824 38 H 0.273 0.727 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.580 -22.334 3.355 23.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.057 4.057 3 N -0.126 5.126 4 N -0.059 5.059 5 C -0.027 4.027 6 C 0.016 3.984 7 C -0.110 4.110 8 C -0.128 4.128 9 C -0.118 4.118 10 C -0.111 4.111 11 C -0.071 4.071 12 C 0.322 3.678 13 O -0.368 6.368 14 N -0.257 5.257 15 C -0.159 4.159 16 C -0.199 4.199 17 N -0.092 5.092 18 N 0.087 4.913 19 C -0.455 4.455 20 H 0.133 0.867 21 C -0.171 4.171 22 N -0.397 5.397 23 Si 0.757 3.243 24 H -0.188 1.188 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.236 4.236 28 O -0.107 6.107 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.125 0.875 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.159 0.841 36 H 0.227 0.773 37 H 0.193 0.807 38 H 0.084 0.916 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.961 -19.244 2.155 20.261 hybrid contribution 0.322 -1.728 0.974 2.009 sum -5.639 -20.972 3.129 21.941 Atomic orbital electron populations 1.20327 0.80210 1.05531 1.05148 1.28117 0.97734 0.79739 1.00155 1.74652 0.96388 1.25260 1.16289 1.75336 1.10752 1.07168 1.12609 1.25358 0.83220 0.90888 1.03198 1.17058 0.85928 0.91421 1.04042 1.21166 0.99855 0.91311 0.98714 1.21181 0.91836 1.00290 0.99456 1.21319 0.98116 0.94520 0.97877 1.21325 0.97637 0.93725 0.98417 1.20102 0.92090 0.95038 0.99874 1.17679 0.81138 0.85311 0.83644 1.90744 1.43019 1.69203 1.33849 1.42322 1.44270 1.05719 1.33411 1.17206 1.11066 0.81633 1.05961 1.24110 1.03726 0.90239 1.01864 1.78248 1.09110 1.16703 1.05095 1.44529 1.24985 1.03494 1.18289 1.19872 1.26172 0.82608 1.16874 0.86726 1.25624 0.96128 0.99772 0.95581 1.70238 1.26284 1.25662 1.17480 0.85791 0.79040 0.80362 0.79078 1.18764 1.20001 1.19988 1.21227 1.10626 0.85838 1.05871 1.84729 1.17118 1.38247 1.70590 0.88389 0.89127 0.87461 0.84738 0.84784 0.84707 0.84092 0.77259 0.80710 0.91638 0.83861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.41 10.51 36.01 0.38 -0.03 16 2 C 0.15 2.12 8.47 -12.85 -0.11 2.01 16 3 N -0.28 -5.26 12.22 32.58 0.40 -4.86 16 4 N -0.21 -4.36 8.58 32.04 0.27 -4.08 16 5 C 0.18 3.03 7.76 -13.94 -0.11 2.93 16 6 C 0.02 0.25 5.90 -104.64 -0.62 -0.36 16 7 C -0.09 -0.90 9.72 -39.23 -0.38 -1.28 16 8 C -0.11 -0.82 10.02 -39.56 -0.40 -1.22 16 9 C -0.10 -0.77 10.02 -39.57 -0.40 -1.17 16 10 C -0.09 -0.97 9.70 -39.22 -0.38 -1.35 16 11 C -0.07 -0.97 5.68 -104.64 -0.59 -1.56 16 12 C 0.54 10.39 6.04 -12.44 -0.08 10.31 16 13 O -0.49 -11.61 11.70 5.27 0.06 -11.55 16 14 N -0.61 -11.77 5.44 -10.92 -0.06 -11.83 16 15 C -0.05 -1.29 6.90 -83.86 -0.58 -1.87 16 16 C -0.02 -0.66 10.85 -17.03 -0.18 -0.84 16 17 N -0.26 -7.95 10.39 30.80 0.32 -7.63 16 18 N -0.15 -4.15 3.74 -11.41 -0.04 -4.19 16 19 C -0.32 -8.86 10.25 -14.82 -0.15 -9.01 16 20 H 0.12 2.81 7.83 -52.49 -0.41 2.40 16 21 C 0.05 1.22 5.50 -17.51 -0.10 1.13 16 22 N -0.77 -22.32 11.81 55.49 0.66 -21.66 16 23 Si 0.93 19.58 29.55 -169.99 -5.02 14.56 16 24 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 27 C -0.08 -2.08 11.49 -16.38 -0.19 -2.27 16 28 O -0.23 -3.24 10.68 4.13 0.04 -3.20 16 29 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.13 1.08 7.95 -52.49 -0.42 0.66 16 33 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 35 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.39 5.90 8.76 -40.82 -0.36 5.55 16 37 H 0.18 4.98 5.91 -52.49 -0.31 4.67 16 38 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.14 2.94 8.06 -52.49 -0.42 2.51 16 LS Contribution 349.66 15.07 5.27 5.27 Total: -1.00 -39.25 349.66 -5.57 -44.82 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -3.59 Total: 8.95 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -3.88 Total: -4.59 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 1.55 Total: -54.25 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.11 Total: -14.74 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -39.25 -5.57 -44.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319187291.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.752 kcal (2) G-P(sol) polarization free energy of solvation -39.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds