Wall clock time and date at job start Tue Mar 31 2020 22:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30475 * 126.17967 * 2 1 4 4 N 1.28668 * 109.51575 * 180.02562 * 3 2 1 5 5 C 1.31300 * 109.22869 * 359.97438 * 4 3 2 6 6 C 1.47641 * 126.38612 * 179.97438 * 5 4 3 7 7 C 1.39418 * 120.22616 * 173.61485 * 6 5 4 8 8 C 1.37996 * 119.99601 * 179.97438 * 7 6 5 9 9 C 1.38544 * 120.45235 * 359.97438 * 8 7 6 10 10 C 1.37969 * 120.45130 * 0.02562 * 9 8 7 11 11 C 1.39472 * 119.98705 * 359.97438 * 10 9 8 12 12 C 1.47602 * 120.21931 * 179.97438 * 11 10 9 13 13 O 1.21609 * 119.99750 * 126.48774 * 12 11 10 14 14 N 1.34776 * 120.00012 * 306.48812 * 12 11 10 15 15 C 1.40512 * 119.99914 * 179.97438 * 14 12 11 16 16 C 1.40676 * 126.08443 * 0.02562 * 15 14 12 17 17 N 1.30899 * 108.38322 * 179.97438 * 16 15 14 18 18 N 1.40069 * 108.41831 * 0.02562 * 17 16 15 19 19 C 1.37313 * 126.06963 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99858 * 179.97438 * 19 18 17 21 21 C 1.38988 * 119.99747 * 359.97162 * 19 18 17 22 22 N 1.31290 * 120.00035 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00022 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46658 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47083 * 119.99745 * 23 21 19 26 26 H 1.48493 * 109.47475 * 240.00329 * 23 21 19 27 27 C 1.35702 * 126.08523 * 179.71772 * 15 14 12 28 28 O 1.34336 * 126.17704 * 180.34529 * 2 1 3 29 29 H 1.09010 * 109.46732 * 89.97948 * 1 2 3 30 30 H 1.08999 * 109.47569 * 209.97504 * 1 2 3 31 31 H 1.08996 * 109.47324 * 329.98507 * 1 2 3 32 32 H 1.07999 * 120.00156 * 359.70729 * 7 6 5 33 33 H 1.07999 * 119.76980 * 179.97438 * 8 7 6 34 34 H 1.08002 * 119.76966 * 180.02562 * 9 8 7 35 35 H 1.07996 * 120.00461 * 180.02562 * 10 9 8 36 36 H 0.97002 * 120.00337 * 0.02562 * 14 12 11 37 37 H 1.07997 * 125.80509 * 0.02562 * 16 15 14 38 38 H 0.97004 * 119.99739 * 179.97438 * 22 21 19 39 39 H 1.07994 * 126.24938 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2772 1.0532 0.0000 4 7 3.5099 0.6842 -0.0005 5 6 3.5686 -0.6275 -0.0004 6 6 4.7952 -1.4493 -0.0014 7 6 4.7120 -2.8345 0.1330 8 6 5.8615 -3.5980 0.1309 9 6 7.1029 -2.9979 -0.0046 10 6 7.2067 -1.6287 -0.1387 11 6 6.0570 -0.8391 -0.1391 12 6 6.1622 0.6262 -0.2817 13 8 5.5287 1.1999 -1.1468 14 7 6.9603 1.3284 0.5469 15 6 7.0608 2.7233 0.4108 16 6 6.3893 3.5135 -0.5398 17 7 6.7339 4.7628 -0.3556 18 7 7.6356 4.8199 0.7148 19 6 8.2265 5.9543 1.2144 20 1 8.9103 5.8848 2.0475 21 6 7.9446 7.1918 0.6480 22 7 7.1130 7.2762 -0.3644 23 14 8.7490 8.7349 1.3272 24 1 9.6385 8.3719 2.4596 25 1 9.5488 9.3872 0.2595 26 1 7.6996 9.6721 1.8023 27 6 7.8184 3.5485 1.1766 28 8 2.3000 -1.0843 -0.0065 29 1 -0.3633 0.0004 -1.0278 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3634 0.8898 0.5140 32 1 3.7484 -3.3095 0.2429 33 1 5.7929 -4.6707 0.2356 34 1 7.9953 -3.6062 -0.0052 35 1 8.1780 -1.1685 -0.2443 36 1 7.4659 0.8707 1.2367 37 1 5.7052 3.1512 -1.2928 38 1 6.9160 8.1400 -0.7594 39 1 8.4519 3.2531 1.9998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319187291.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:30 Heat of formation + Delta-G solvation = 104.416650 kcal Electronic energy + Delta-G solvation = -28106.927289 eV Core-core repulsion = 24018.313925 eV Total energy + Delta-G solvation = -4088.613364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.21230 -41.75742 -40.80866 -39.18036 -37.26348 -35.90934 -34.97731 -34.43965 -32.59879 -32.22694 -32.06009 -29.58234 -28.85095 -26.94175 -25.71633 -24.55254 -23.75452 -22.85202 -22.77937 -21.72275 -21.14687 -19.44896 -18.95498 -18.55269 -18.16592 -17.43789 -17.37305 -16.91067 -16.43551 -16.17743 -15.71587 -15.60333 -15.35846 -15.08270 -14.87457 -14.75272 -14.61958 -14.28741 -13.78663 -13.63202 -13.49181 -13.44582 -13.28963 -12.99746 -12.93715 -12.85626 -12.74262 -12.36052 -12.02308 -11.97185 -11.68248 -11.26920 -10.97936 -10.82274 -10.67565 -10.09090 -10.05526 -9.64487 -8.48976 -8.45326 -6.22173 -0.70777 0.06879 0.56454 1.07701 1.25159 1.39200 1.44722 1.59011 1.59994 1.90067 2.06078 2.28244 2.53074 2.72572 2.75284 2.93094 3.10573 3.36747 3.63799 3.77737 3.92034 4.05913 4.23725 4.31200 4.34427 4.40537 4.45053 4.51643 4.58393 4.66894 4.70120 4.87546 4.99846 5.01634 5.09621 5.21809 5.28086 5.31099 5.36512 5.51384 5.77866 5.97716 6.34409 6.74821 6.76691 7.23536 7.43959 7.50350 7.71148 8.54543 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014082 B = 0.003050 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.890827 B = 9179.160947 C =10830.131907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.169 3.831 3 N -0.342 5.342 4 N -0.278 5.278 5 C 0.181 3.819 6 C -0.013 4.013 7 C -0.083 4.083 8 C -0.088 4.088 9 C -0.080 4.080 10 C -0.090 4.090 11 C -0.095 4.095 12 C 0.539 3.461 13 O -0.543 6.543 14 N -0.610 5.610 15 C -0.036 4.036 16 C -0.054 4.054 17 N -0.311 5.311 18 N -0.168 5.168 19 C -0.354 4.354 20 H 0.142 0.858 21 C -0.010 4.010 22 N -0.827 5.827 23 Si 1.022 2.978 24 H -0.239 1.239 25 H -0.272 1.272 26 H -0.274 1.274 27 C -0.082 4.082 28 O -0.219 6.219 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.114 0.886 32 H 0.155 0.845 33 H 0.181 0.819 34 H 0.180 0.820 35 H 0.153 0.847 36 H 0.416 0.584 37 H 0.157 0.843 38 H 0.275 0.725 39 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.148 -26.395 5.426 27.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.041 4.041 3 N -0.190 5.190 4 N -0.124 5.124 5 C -0.027 4.027 6 C -0.016 4.016 7 C -0.103 4.103 8 C -0.106 4.106 9 C -0.098 4.098 10 C -0.108 4.108 11 C -0.099 4.099 12 C 0.326 3.674 13 O -0.419 6.419 14 N -0.255 5.255 15 C -0.142 4.142 16 C -0.229 4.229 17 N -0.143 5.143 18 N 0.063 4.937 19 C -0.485 4.485 20 H 0.160 0.840 21 C -0.221 4.221 22 N -0.455 5.455 23 Si 0.841 3.159 24 H -0.161 1.161 25 H -0.197 1.197 26 H -0.199 1.199 27 C -0.233 4.233 28 O -0.100 6.100 29 H 0.137 0.863 30 H 0.144 0.856 31 H 0.132 0.868 32 H 0.172 0.828 33 H 0.199 0.801 34 H 0.197 0.803 35 H 0.171 0.829 36 H 0.253 0.747 37 H 0.174 0.826 38 H 0.085 0.915 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -4.517 -23.358 4.255 24.168 hybrid contribution -0.192 -0.791 0.310 0.871 sum -4.709 -24.149 4.565 25.024 Atomic orbital electron populations 1.20757 0.75673 1.07559 1.07035 1.29307 0.99522 0.78644 0.96588 1.74506 0.96848 1.27875 1.19762 1.75200 1.11971 1.09551 1.15634 1.25954 0.84720 0.90467 1.01602 1.17352 0.84407 0.93028 1.06782 1.21488 1.02081 0.89281 0.97412 1.21764 0.90502 1.02278 0.96018 1.21836 1.00041 0.93185 0.94698 1.21554 0.96529 0.95015 0.97746 1.19773 0.94151 0.91835 1.04176 1.18544 0.79238 0.87554 0.82091 1.90715 1.44403 1.71046 1.35775 1.42276 1.45128 1.03618 1.34455 1.17276 1.08969 0.84032 1.03949 1.24001 1.04848 0.90838 1.03185 1.78133 1.11012 1.18012 1.07157 1.44839 1.25352 1.05126 1.18433 1.20676 1.26921 0.82947 1.17928 0.84048 1.26947 0.96174 1.03614 0.95343 1.70438 1.28624 1.26763 1.19682 0.84503 0.77960 0.74632 0.78838 1.16113 1.19668 1.19898 1.21963 1.10381 0.84575 1.06333 1.84743 1.16443 1.38018 1.70802 0.86272 0.85618 0.86761 0.82770 0.80135 0.80299 0.82896 0.74683 0.82587 0.91517 0.79381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.73 10.51 71.24 0.75 0.01 16 2 C 0.17 4.88 8.47 88.31 0.75 5.63 16 3 N -0.34 -14.12 12.22 -165.32 -2.02 -16.14 16 4 N -0.28 -12.44 8.58 -166.35 -1.43 -13.86 16 5 C 0.18 6.37 7.76 87.26 0.68 7.05 16 6 C -0.01 -0.36 5.90 -19.87 -0.12 -0.48 16 7 C -0.08 -1.37 9.72 22.50 0.22 -1.15 16 8 C -0.09 -0.81 10.02 22.29 0.22 -0.58 16 9 C -0.08 -0.78 10.02 22.28 0.22 -0.56 16 10 C -0.09 -1.64 9.70 22.50 0.22 -1.42 16 11 C -0.09 -2.75 5.68 -19.87 -0.11 -2.86 16 12 C 0.54 21.91 6.04 86.71 0.52 22.44 16 13 O -0.54 -27.80 11.70 -4.06 -0.05 -27.84 16 14 N -0.61 -24.06 5.44 -306.71 -1.67 -25.73 16 15 C -0.04 -1.84 6.90 37.76 0.26 -1.57 16 16 C -0.05 -3.25 10.85 85.43 0.93 -2.32 16 17 N -0.31 -20.31 10.39 -56.45 -0.59 -20.89 16 18 N -0.17 -9.97 3.74 -190.00 -0.71 -10.68 16 19 C -0.35 -19.73 10.25 84.01 0.86 -18.87 16 20 H 0.14 6.81 7.83 -2.91 -0.02 6.79 16 21 C -0.01 -0.53 5.50 84.95 0.47 -0.06 16 22 N -0.83 -50.48 11.81 21.66 0.26 -50.22 16 23 Si 1.02 40.52 29.55 68.60 2.03 42.55 16 24 H -0.24 -8.39 7.11 99.48 0.71 -7.68 16 25 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 26 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 27 C -0.08 -4.10 11.49 83.38 0.96 -3.15 16 28 O -0.22 -6.34 10.68 -8.15 -0.09 -6.43 16 29 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.15 1.88 7.95 -2.91 -0.02 1.86 16 33 H 0.18 0.13 8.06 -2.91 -0.02 0.11 16 34 H 0.18 0.33 8.06 -2.91 -0.02 0.30 16 35 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.42 12.29 8.76 -92.71 -0.81 11.48 16 37 H 0.16 9.93 5.91 -2.91 -0.02 9.91 16 38 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 39 H 0.19 7.38 8.06 -2.91 -0.02 7.36 16 Total: -1.00 -99.26 349.66 2.89 -96.37 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.32 Total: 30.78 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 6.83 Total: 2.11 kcal Atomic # 7 Polarization: -131.38 SS G_CDS: -6.16 Total: -137.53 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -0.13 Total: -34.27 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -99.26 2.89 -96.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319187291.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.789 kcal (2) G-P(sol) polarization free energy of solvation -99.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds