Wall clock time and date at job start Tue Mar 31 2020 22:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37890 * 120.04130 * 2 1 4 4 C 1.38498 * 120.33631 * 179.97438 * 3 2 1 5 5 C 1.38105 * 120.41036 * 0.23821 * 4 3 2 6 6 C 1.38806 * 120.07021 * 359.48507 * 5 4 3 7 7 N 1.39221 * 120.16560 * 180.23316 * 6 5 4 8 8 C 1.34772 * 120.00219 * 325.25910 * 7 6 5 9 9 O 1.21391 * 119.99749 * 4.50374 * 8 7 6 10 10 C 1.49209 * 120.00085 * 184.50997 * 8 7 6 11 11 O 1.21410 * 120.00192 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99719 * 180.02562 * 10 8 7 13 13 C 1.40298 * 119.99507 * 179.97438 * 12 10 8 14 14 C 1.40720 * 126.10321 * 359.68889 * 13 12 10 15 15 N 1.30876 * 108.37870 * 179.87611 * 14 13 12 16 16 N 1.40067 * 108.43474 * 0.38035 * 15 14 13 17 17 C 1.37293 * 126.05615 * 179.71315 * 16 15 14 18 18 H 1.08005 * 119.99854 * 185.07254 * 17 16 15 19 19 C 1.39002 * 119.99999 * 5.07990 * 17 16 15 20 20 N 1.31287 * 120.00227 * 354.96127 * 19 17 16 21 21 Si 1.86799 * 120.00245 * 174.96594 * 19 17 16 22 22 H 1.48498 * 109.47135 * 94.99687 * 21 19 17 23 23 H 1.48496 * 109.47442 * 214.99665 * 21 19 17 24 24 H 1.48506 * 109.46935 * 334.99955 * 21 19 17 25 25 C 1.35793 * 126.09776 * 179.97438 * 13 12 10 26 26 C 1.39644 * 120.04185 * 179.97438 * 2 1 3 27 27 C 1.43201 * 120.19766 * 0.02562 * 26 2 1 28 28 N 3.48608 * 80.49632 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47079 * 89.99856 * 1 2 3 30 30 H 1.08999 * 109.47444 * 209.99976 * 1 2 3 31 31 H 1.09003 * 109.47096 * 330.00090 * 1 2 3 32 32 H 1.07999 * 119.83001 * 359.97438 * 3 2 1 33 33 H 1.07998 * 119.79534 * 179.97438 * 4 3 2 34 34 H 1.07992 * 119.96339 * 179.74438 * 5 4 3 35 35 H 0.97000 * 119.99430 * 145.25739 * 7 6 5 36 36 H 0.96998 * 120.00261 * 359.97438 * 12 10 8 37 37 H 1.07998 * 125.81414 * 0.02562 * 14 13 12 38 38 H 0.97003 * 120.00195 * 179.97438 * 20 19 17 39 39 H 1.07998 * 126.25203 * 359.92549 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1937 0.0000 4 6 3.5822 1.2008 0.0005 5 6 4.2874 0.0134 -0.0039 6 6 3.6097 -1.1980 0.0019 7 7 4.3187 -2.3962 0.0024 8 6 5.4847 -2.4896 -0.6669 9 8 5.9579 -1.5079 -1.2017 10 6 6.1940 -3.7997 -0.7508 11 8 5.7209 -4.7815 -0.2157 12 7 7.3603 -3.8928 -1.4197 13 6 8.0275 -5.1246 -1.4981 14 6 7.6009 -6.3366 -0.9243 15 7 8.4800 -7.2620 -1.2135 16 7 9.5030 -6.6794 -1.9724 17 6 10.6116 -7.3233 -2.4637 18 1 11.3828 -6.7611 -2.9692 19 6 10.7414 -8.6987 -2.3105 20 7 9.8544 -9.3680 -1.6111 21 14 12.1777 -9.5951 -3.0996 22 1 13.2758 -9.7382 -2.1102 23 1 11.7362 -10.9404 -3.5470 24 1 12.6632 -8.8191 -4.2690 25 6 9.2028 -5.3586 -2.1366 26 6 2.2060 -1.2088 0.0005 27 6 1.4952 -2.4520 0.0005 28 7 0.9314 -3.4382 0.0015 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6552 2.1277 -0.0004 33 1 4.1140 2.1408 0.0001 34 1 5.3672 0.0274 -0.0076 35 1 3.9733 -3.1638 0.4845 36 1 7.7385 -3.1084 -1.8469 37 1 6.7000 -6.4795 -0.3460 38 1 9.9448 -10.3279 -1.5045 39 1 9.7922 -4.6321 -2.6762 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319988521.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:10 Heat of formation + Delta-G solvation = 80.870662 kcal Electronic energy + Delta-G solvation = -26990.759217 eV Core-core repulsion = 22901.124823 eV Total energy + Delta-G solvation = -4089.634394 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.33615 -40.09325 -39.33186 -38.09646 -36.65942 -35.70771 -34.34513 -33.25108 -32.91739 -30.73384 -30.37828 -28.20626 -27.54293 -25.80184 -24.60819 -23.70942 -22.17609 -21.06436 -20.32638 -19.62235 -19.27604 -18.43423 -17.57163 -17.24385 -16.34994 -16.12529 -15.67590 -15.55614 -15.23057 -15.13003 -14.70937 -14.30756 -14.03079 -14.00160 -13.71232 -13.44959 -13.36472 -13.20662 -13.09807 -13.04118 -12.76687 -12.43985 -12.14402 -11.84531 -11.77661 -11.63046 -11.33539 -11.29441 -10.96783 -10.71313 -10.58190 -10.39550 -9.37037 -9.29120 -9.16720 -8.94264 -8.61488 -8.19468 -6.86735 -6.65914 -4.33481 0.31968 0.78790 1.46836 2.22789 2.39243 2.66562 2.87971 3.00872 3.06460 3.13620 3.47054 3.55601 3.57275 3.62079 3.79938 4.26649 4.28649 4.41538 4.45597 4.81905 4.82037 4.91869 4.92624 4.96748 5.15585 5.16289 5.31485 5.58890 5.69684 5.85712 5.98048 6.05700 6.12804 6.27452 6.44813 6.61204 6.72694 6.82729 6.89622 7.09998 7.22062 7.45093 7.74295 7.92613 8.10053 8.34322 8.60980 9.24818 9.52993 10.29917 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.030003 B = 0.002037 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.028955 B =13741.637304 C =14508.498661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.018 4.018 3 C -0.138 4.138 4 C -0.065 4.065 5 C -0.130 4.130 6 C 0.201 3.799 7 N -0.652 5.652 8 C 0.521 3.479 9 O -0.500 6.500 10 C 0.483 3.517 11 O -0.517 6.517 12 N -0.576 5.576 13 C -0.073 4.073 14 C -0.024 4.024 15 N -0.261 5.261 16 N -0.136 5.136 17 C -0.321 4.321 18 H 0.119 0.881 19 C 0.046 3.954 20 N -0.765 5.765 21 Si 0.936 3.064 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.262 1.262 25 C -0.075 4.075 26 C -0.059 4.059 27 C 0.247 3.753 28 N -0.404 5.404 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.152 0.848 35 H 0.426 0.574 36 H 0.410 0.590 37 H 0.178 0.822 38 H 0.277 0.723 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.716 21.345 2.726 24.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.021 4.021 3 C -0.157 4.157 4 C -0.084 4.084 5 C -0.150 4.150 6 C 0.102 3.898 7 N -0.298 5.298 8 C 0.304 3.696 9 O -0.373 6.373 10 C 0.263 3.737 11 O -0.394 6.394 12 N -0.218 5.218 13 C -0.179 4.179 14 C -0.200 4.200 15 N -0.091 5.091 16 N 0.097 4.903 17 C -0.454 4.454 18 H 0.137 0.863 19 C -0.172 4.172 20 N -0.391 5.391 21 Si 0.760 3.240 22 H -0.196 1.196 23 H -0.200 1.200 24 H -0.186 1.186 25 C -0.227 4.227 26 C -0.065 4.065 27 C -0.068 4.068 28 N -0.079 5.079 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.170 0.830 35 H 0.264 0.736 36 H 0.245 0.755 37 H 0.194 0.806 38 H 0.087 0.913 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.258 18.252 2.899 22.176 hybrid contribution 0.670 0.909 -0.473 1.224 sum -11.587 19.160 2.426 22.523 Atomic orbital electron populations 1.20917 0.90179 1.03542 1.03306 1.19733 0.96144 0.90805 0.95452 1.20978 0.94253 0.97247 1.03196 1.21299 0.93931 0.98145 0.95030 1.21329 1.01976 0.89937 1.01718 1.17642 0.88561 0.86368 0.97200 1.43121 1.22141 1.13705 1.50798 1.20569 0.80987 0.90049 0.77971 1.90739 1.64670 1.37949 1.43932 1.19274 0.83128 0.87968 0.83316 1.90704 1.65713 1.36863 1.46113 1.42083 1.19643 1.11028 1.49076 1.17224 0.98452 0.85883 1.16344 1.24157 1.01657 0.89411 1.04729 1.78285 0.97956 1.19185 1.13698 1.44591 1.13846 1.03691 1.28148 1.19947 0.96956 0.91523 1.36957 0.86331 1.25687 0.98765 0.96801 0.95918 1.70210 1.31234 1.08857 1.28846 0.85782 0.79705 0.79019 0.79514 1.19557 1.19969 1.18635 1.21300 0.99761 0.89010 1.12636 1.15722 0.89876 0.87509 1.13388 1.25490 0.94140 0.92871 0.94270 1.81323 1.07960 1.10089 1.08520 0.90128 0.91401 0.90249 0.84737 0.84596 0.83042 0.73566 0.75457 0.80559 0.91269 0.83233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 9.61 36.00 0.35 -0.32 16 2 C -0.02 -0.13 5.91 -104.23 -0.62 -0.75 16 3 C -0.14 -0.78 9.68 -39.61 -0.38 -1.17 16 4 C -0.06 -0.41 10.03 -39.53 -0.40 -0.81 16 5 C -0.13 -1.18 8.68 -39.42 -0.34 -1.52 16 6 C 0.20 2.10 6.31 -83.49 -0.53 1.58 16 7 N -0.65 -7.91 5.00 -10.14 -0.05 -7.96 16 8 C 0.52 7.33 7.72 -11.70 -0.09 7.24 16 9 O -0.50 -7.08 13.88 5.46 0.08 -7.00 16 10 C 0.48 8.35 7.85 -11.70 -0.09 8.26 16 11 O -0.52 -10.29 13.62 5.44 0.07 -10.21 16 12 N -0.58 -10.29 5.45 -10.48 -0.06 -10.35 16 13 C -0.07 -1.64 6.90 -83.92 -0.58 -2.22 16 14 C -0.02 -0.61 10.84 -17.02 -0.18 -0.79 16 15 N -0.26 -7.40 10.41 30.81 0.32 -7.07 16 16 N -0.14 -3.65 3.73 -11.40 -0.04 -3.69 16 17 C -0.32 -8.27 10.24 -14.82 -0.15 -8.42 16 18 H 0.12 2.71 7.84 -52.48 -0.41 2.30 16 19 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 20 N -0.77 -20.93 11.83 55.50 0.66 -20.27 16 21 Si 0.94 18.47 29.55 -169.99 -5.02 13.44 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 23 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.26 -4.95 7.11 56.52 0.40 -4.54 16 25 C -0.08 -1.72 11.50 -16.38 -0.19 -1.91 16 26 C -0.06 -0.57 5.75 -106.64 -0.61 -1.18 16 27 C 0.25 2.87 12.88 -22.47 -0.29 2.58 16 28 N -0.40 -5.59 18.54 41.84 0.78 -4.81 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.44 7.09 -51.93 -0.37 0.07 16 31 H 0.08 0.27 8.09 -51.93 -0.42 -0.15 16 32 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 33 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 34 H 0.15 1.50 6.19 -52.49 -0.33 1.17 16 35 H 0.43 5.14 7.65 -40.82 -0.31 4.83 16 36 H 0.41 6.10 8.29 -40.82 -0.34 5.77 16 37 H 0.18 4.40 5.92 -52.49 -0.31 4.09 16 38 H 0.28 6.90 8.31 -40.82 -0.34 6.57 16 39 H 0.15 2.83 8.06 -52.49 -0.42 2.41 16 LS Contribution 354.41 15.07 5.34 5.34 Total: -1.00 -32.79 354.41 -5.45 -38.24 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -3.31 Total: 12.72 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -4.20 Total: 1.63 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 1.60 Total: -54.16 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.15 Total: -17.22 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.44 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.79 -5.45 -38.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319988521.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.107 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds