Wall clock time and date at job start Tue Mar 31 2020 22:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37890 * 120.04130 * 2 1 4 4 C 1.38498 * 120.33631 * 179.97438 * 3 2 1 5 5 C 1.38105 * 120.41036 * 0.23821 * 4 3 2 6 6 C 1.38806 * 120.07021 * 359.48507 * 5 4 3 7 7 N 1.39221 * 120.16560 * 180.23316 * 6 5 4 8 8 C 1.34772 * 120.00219 * 325.25910 * 7 6 5 9 9 O 1.21391 * 119.99749 * 4.50374 * 8 7 6 10 10 C 1.49209 * 120.00085 * 184.50997 * 8 7 6 11 11 O 1.21410 * 120.00192 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99719 * 180.02562 * 10 8 7 13 13 C 1.40298 * 119.99507 * 179.97438 * 12 10 8 14 14 C 1.40720 * 126.10321 * 359.68889 * 13 12 10 15 15 N 1.30876 * 108.37870 * 179.87611 * 14 13 12 16 16 N 1.40067 * 108.43474 * 0.38035 * 15 14 13 17 17 C 1.37293 * 126.05615 * 179.71315 * 16 15 14 18 18 H 1.08005 * 119.99854 * 185.07254 * 17 16 15 19 19 C 1.39002 * 119.99999 * 5.07990 * 17 16 15 20 20 N 1.31287 * 120.00227 * 354.96127 * 19 17 16 21 21 Si 1.86799 * 120.00245 * 174.96594 * 19 17 16 22 22 H 1.48498 * 109.47135 * 94.99687 * 21 19 17 23 23 H 1.48496 * 109.47442 * 214.99665 * 21 19 17 24 24 H 1.48506 * 109.46935 * 334.99955 * 21 19 17 25 25 C 1.35793 * 126.09776 * 179.97438 * 13 12 10 26 26 C 1.39644 * 120.04185 * 179.97438 * 2 1 3 27 27 C 1.43201 * 120.19766 * 0.02562 * 26 2 1 28 28 N 3.48608 * 80.49632 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47079 * 89.99856 * 1 2 3 30 30 H 1.08999 * 109.47444 * 209.99976 * 1 2 3 31 31 H 1.09003 * 109.47096 * 330.00090 * 1 2 3 32 32 H 1.07999 * 119.83001 * 359.97438 * 3 2 1 33 33 H 1.07998 * 119.79534 * 179.97438 * 4 3 2 34 34 H 1.07992 * 119.96339 * 179.74438 * 5 4 3 35 35 H 0.97000 * 119.99430 * 145.25739 * 7 6 5 36 36 H 0.96998 * 120.00261 * 359.97438 * 12 10 8 37 37 H 1.07998 * 125.81414 * 0.02562 * 14 13 12 38 38 H 0.97003 * 120.00195 * 179.97438 * 20 19 17 39 39 H 1.07998 * 126.25203 * 359.92549 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1937 0.0000 4 6 3.5822 1.2008 0.0005 5 6 4.2874 0.0134 -0.0039 6 6 3.6097 -1.1980 0.0019 7 7 4.3187 -2.3962 0.0024 8 6 5.4847 -2.4896 -0.6669 9 8 5.9579 -1.5079 -1.2017 10 6 6.1940 -3.7997 -0.7508 11 8 5.7209 -4.7815 -0.2157 12 7 7.3603 -3.8928 -1.4197 13 6 8.0275 -5.1246 -1.4981 14 6 7.6009 -6.3366 -0.9243 15 7 8.4800 -7.2620 -1.2135 16 7 9.5030 -6.6794 -1.9724 17 6 10.6116 -7.3233 -2.4637 18 1 11.3828 -6.7611 -2.9692 19 6 10.7414 -8.6987 -2.3105 20 7 9.8544 -9.3680 -1.6111 21 14 12.1777 -9.5951 -3.0996 22 1 13.2758 -9.7382 -2.1102 23 1 11.7362 -10.9404 -3.5470 24 1 12.6632 -8.8191 -4.2690 25 6 9.2028 -5.3586 -2.1366 26 6 2.2060 -1.2088 0.0005 27 6 1.4952 -2.4520 0.0005 28 7 0.9314 -3.4382 0.0015 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6552 2.1277 -0.0004 33 1 4.1140 2.1408 0.0001 34 1 5.3672 0.0274 -0.0076 35 1 3.9733 -3.1638 0.4845 36 1 7.7385 -3.1084 -1.8469 37 1 6.7000 -6.4795 -0.3460 38 1 9.9448 -10.3279 -1.5045 39 1 9.7922 -4.6321 -2.6762 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319988521.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:09 Heat of formation + Delta-G solvation = 58.406697 kcal Electronic energy + Delta-G solvation = -26991.733328 eV Core-core repulsion = 22901.124823 eV Total energy + Delta-G solvation = -4090.608505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.44732 -41.63564 -40.54430 -39.42252 -37.57953 -36.78005 -35.88432 -35.00843 -33.52880 -32.33594 -31.49638 -29.95047 -28.15432 -27.33075 -26.06574 -24.47601 -23.30045 -22.80333 -21.47934 -21.25797 -20.38108 -19.52715 -19.17936 -18.23608 -17.52309 -17.34195 -17.28474 -16.87310 -16.49050 -16.00350 -15.85400 -15.54313 -15.38374 -15.27152 -14.91010 -14.83457 -14.62059 -14.14841 -14.13451 -13.97384 -13.53981 -13.42985 -13.33675 -13.10196 -13.01364 -12.93036 -12.82123 -12.43784 -12.23325 -12.09607 -12.02554 -11.52394 -11.10608 -10.89900 -10.71737 -10.17484 -9.84039 -9.34126 -8.67041 -8.51428 -6.29295 -0.44606 0.01026 0.41927 1.05573 1.27050 1.40390 1.48515 1.58123 1.67853 1.88204 1.92406 2.08624 2.39224 2.44664 2.74383 2.78499 2.82459 3.05246 3.34999 3.66523 3.96752 4.17578 4.26939 4.36442 4.39654 4.48992 4.59798 4.74794 4.79774 4.90245 4.95796 5.01036 5.12437 5.15614 5.25778 5.26406 5.40697 5.49054 5.70616 5.85777 5.89777 6.14765 6.30898 6.33881 6.52023 6.66002 6.96081 7.38884 7.59391 8.47908 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.030003 B = 0.002037 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.028955 B =13741.637304 C =14508.498661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.014 4.014 3 C -0.121 4.121 4 C -0.052 4.052 5 C -0.140 4.140 6 C 0.176 3.824 7 N -0.645 5.645 8 C 0.534 3.466 9 O -0.497 6.497 10 C 0.486 3.514 11 O -0.543 6.543 12 N -0.573 5.573 13 C -0.059 4.059 14 C -0.049 4.049 15 N -0.310 5.310 16 N -0.162 5.162 17 C -0.352 4.352 18 H 0.144 0.856 19 C -0.006 4.006 20 N -0.821 5.821 21 Si 1.019 2.981 22 H -0.264 1.264 23 H -0.278 1.278 24 H -0.243 1.243 25 C -0.069 4.069 26 C -0.074 4.074 27 C 0.268 3.732 28 N -0.455 5.455 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.108 0.892 32 H 0.174 0.826 33 H 0.169 0.831 34 H 0.143 0.857 35 H 0.423 0.577 36 H 0.427 0.573 37 H 0.172 0.828 38 H 0.278 0.722 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.563 25.452 1.809 28.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.017 4.017 3 C -0.139 4.139 4 C -0.071 4.071 5 C -0.160 4.160 6 C 0.079 3.921 7 N -0.291 5.291 8 C 0.316 3.684 9 O -0.371 6.371 10 C 0.267 3.733 11 O -0.422 6.422 12 N -0.218 5.218 13 C -0.165 4.165 14 C -0.224 4.224 15 N -0.141 5.141 16 N 0.070 4.930 17 C -0.483 4.483 18 H 0.162 0.838 19 C -0.218 4.218 20 N -0.449 5.449 21 Si 0.838 3.162 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.165 1.165 25 C -0.220 4.220 26 C -0.080 4.080 27 C -0.047 4.047 28 N -0.131 5.131 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.126 0.874 32 H 0.192 0.808 33 H 0.186 0.814 34 H 0.161 0.839 35 H 0.261 0.739 36 H 0.265 0.735 37 H 0.189 0.811 38 H 0.088 0.912 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -12.132 22.434 1.982 25.581 hybrid contribution 0.430 -0.067 -0.111 0.449 sum -11.702 22.367 1.871 25.312 Atomic orbital electron populations 1.20999 0.88878 1.04215 1.03934 1.20057 0.97123 0.90339 0.94199 1.21428 0.94075 0.97973 1.00464 1.21694 0.94415 0.98247 0.92710 1.21396 1.01782 0.90408 1.02418 1.17826 0.88795 0.85935 0.99558 1.43020 1.21444 1.14587 1.50016 1.19715 0.81596 0.88351 0.78775 1.90745 1.64895 1.37176 1.44305 1.19944 0.82589 0.89046 0.81691 1.90696 1.66279 1.38466 1.46741 1.41977 1.19873 1.10091 1.49842 1.17249 0.98155 0.86607 1.14477 1.24230 1.01648 0.90760 1.05772 1.78178 0.99398 1.21139 1.15393 1.44867 1.14154 1.04978 1.29015 1.20683 0.97544 0.92506 1.37565 0.83849 1.26913 1.01613 0.97455 0.95835 1.70384 1.34070 1.09182 1.31251 0.84571 0.75533 0.77167 0.78917 1.18894 1.20283 1.16542 1.22033 0.99855 0.88498 1.11664 1.15882 0.89525 0.87530 1.15088 1.25868 0.93141 0.92812 0.92831 1.81329 1.09665 1.11486 1.10613 0.89439 0.92981 0.87367 0.80839 0.81363 0.83937 0.73879 0.73464 0.81081 0.91249 0.79077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.61 71.23 0.68 -0.30 16 2 C -0.01 -0.16 5.91 -19.61 -0.12 -0.28 16 3 C -0.12 -0.80 9.68 22.25 0.22 -0.58 16 4 C -0.05 -0.44 10.03 22.30 0.22 -0.22 16 5 C -0.14 -2.23 8.68 22.37 0.19 -2.04 16 6 C 0.18 3.50 6.31 38.62 0.24 3.74 16 7 N -0.65 -15.66 5.00 -304.34 -1.52 -17.18 16 8 C 0.53 14.78 7.72 87.20 0.67 15.45 16 9 O -0.50 -13.41 13.88 -3.37 -0.05 -13.46 16 10 C 0.49 16.94 7.85 87.20 0.68 17.62 16 11 O -0.54 -22.43 13.62 -3.43 -0.05 -22.47 16 12 N -0.57 -20.21 5.45 -305.41 -1.66 -21.87 16 13 C -0.06 -2.65 6.90 37.82 0.26 -2.39 16 14 C -0.05 -2.59 10.84 85.44 0.93 -1.67 16 15 N -0.31 -18.38 10.41 -56.44 -0.59 -18.97 16 16 N -0.16 -8.85 3.73 -189.98 -0.71 -9.56 16 17 C -0.35 -18.24 10.24 84.02 0.86 -17.38 16 18 H 0.14 6.39 7.84 -2.91 -0.02 6.37 16 19 C -0.01 -0.31 5.50 84.96 0.47 0.16 16 20 N -0.82 -46.84 11.83 21.66 0.26 -46.59 16 21 Si 1.02 37.94 29.55 68.60 2.03 39.97 16 22 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 23 H -0.28 -10.32 7.11 99.48 0.71 -9.62 16 24 H -0.24 -8.14 7.11 99.48 0.71 -7.44 16 25 C -0.07 -3.15 11.50 83.41 0.96 -2.19 16 26 C -0.07 -1.35 5.75 -21.17 -0.12 -1.47 16 27 C 0.27 6.29 12.88 88.33 1.14 7.43 16 28 N -0.45 -13.10 18.54 19.01 0.35 -12.75 16 29 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.61 7.09 -2.39 -0.02 0.59 16 31 H 0.11 0.26 8.09 -2.39 -0.02 0.24 16 32 H 0.17 -0.11 8.06 -2.91 -0.02 -0.13 16 33 H 0.17 0.39 8.06 -2.91 -0.02 0.36 16 34 H 0.14 2.55 6.19 -2.91 -0.02 2.53 16 35 H 0.42 10.61 7.65 -92.71 -0.71 9.90 16 36 H 0.43 12.05 8.29 -92.71 -0.77 11.28 16 37 H 0.17 9.08 5.92 -2.91 -0.02 9.07 16 38 H 0.28 14.55 8.31 -92.71 -0.77 13.78 16 39 H 0.19 6.76 8.06 -2.91 -0.02 6.74 16 Total: -1.00 -76.51 354.41 5.04 -71.46 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: -0.31 Total: 35.52 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: 7.29 Total: 15.89 kcal Atomic # 7 Polarization: -123.04 SS G_CDS: -3.87 Total: -126.91 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -0.09 Total: -35.93 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -76.51 5.04 -71.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319988521.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.871 kcal (2) G-P(sol) polarization free energy of solvation -76.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds